Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005863

Physical Location & Seq

Genomic Coordinates Reverse (-)

5874472 .. 5879699

Gene Structure 5228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07730.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCGGCAGCAACCTTCAACAGTCCCGTTCGTCCCTTCGCTTCACCCATTTCCCGCCAAATCAACTTCCCTCACCAACGGTCTCCGCTTCTTCGATATAATTCCGTCAAAGGTTTTCGATTATACGGAAATAGGTCTTTGCATTGTGGTGTGATTTGTGCTGTCAATGGAGGCGGGAGAGGGTACGTATCTTCATGGGACGAGAAGCCATATGAATATCTTCCAAGTGGGAAAAAAGCTTACTTGGATGAGCAAGATGTTGTCACGTTTCTTGATCCTCCTAAGGAGTTGATTCCTTTGGACTCGGCTTCCTACAATCCTGCTGTATATCTTTGGAAAAAAATTGATGATATTCCTCCAGAAAGGCGTTATCGACTTCTGCGCTTGCTAGAACCAAGGCTCGTATCAAGAGCTTGGGAGATAGCTGGCACACGATACGGCGATCCCAACTTAGCCAAGAGAAGTGCATCTACATTGTTGTCTAATGATGATGGTGTAACATCTCTTGAATATTATAATTGCCGAACAAGTGGAGGACCAATGCCCATTTCTTGGATAAACTCTTTCCAGAAGGCAATATTTTCTAGCACAGACGGGAACATTTATGGACGATTTATTGGTGGATCATTTTTAACCGGACTTGCAAATTCCTTTAGTCCATTGTACTTTGTGGTGAGACAGCTTAAGGAAGTAATGCCAACTGAACAACCTTGTGATGTAGCGTATGATTTTGGGGATGGACTGTTTGACCTTCAAGAATACCCAGAAGGTTTTCCAAGACCAGTCAAACATCCATATCCTTTCAACGATCAGGTGGTTGTGTACGTTCGCCATCTGGGGCCAGGCGTTTCAGTTGGGCAAGCATGGCAGGAAGGAAGGAAATTACAACAGGTGCCACAAAAGTTATGCTCCGATATTTTGATGGTGAAAGATTATTCTGCTCGTAGAGAAAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

36.05

Weight (kDa)

8.82

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73090 AT1G73090
fragaria_vesca	FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290
malus_domestica	MD09G1158700.v1.1
prunus_persica	Prupe.3G167100_v2.0.a1 Prupe.3G167100_v2.0.a1
pyrus_communis	pycom09g07730
rosa_chinensis	RchiOBHm_Chr1g0381181 RchiOBHm_Chr2g0150121
rosa_laevigata	RLG00000020468
rosa_multiflora	Rmu_sc0000156.1_g000009 Rmu_sc0009445.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097430
rosa_rugosa	Rorug02G0419300
rosa_samantha	Rh1AG306600 Rh1CG035500 Rh2AG477900 Rh2BG490500 Rh2CG464100 Rh2DG499300 Rh4AG247100 Rh5DG267800
rosa_wichuraiana	Rw2G039010 Rw5G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
AccB1I	GGYRCC	1 cut(s)	892
AccB7I	CCANNNNNTGG	1 cut(s)	552
AciI	CCGC	4 cut(s)	5, 55, 86, 174
AclWI	GGATC	3 cut(s)	269, 437, 631
AcsI	RAATTY	1 cut(s)	646
AfaI	GTAC	3 cut(s)	185, 665, 824
AfiI	CCNNNNNNNGG	1 cut(s)	552
AflII	CTTAAG	1 cut(s)	683
AgsI	TTSAA	4 cut(s)	19, 509, 755, 805
AjnI	CCWGG	1 cut(s)	841
AjuI	GAANNNNNNNTTGG	2 cut(s)	532, 564
AluBI	AGCT	4 cut(s)	239, 413, 425, 682
AluI	AGCT	4 cut(s)	239, 413, 425, 682
Alw26I	GTCTC	2 cut(s)	87, 670
AlwI	GGATC	3 cut(s)	269, 437, 631
AoxI	GGCC	1 cut(s)	839
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	646
Asp700I	GAANNNNTTC	2 cut(s)	219, 771
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	2 cut(s)	536, 839
AsuHPI	GGTGA	4 cut(s)	36, 65, 685, 937
AvaII	GGWCC	1 cut(s)	536
AxyI	CCTNAGG	1 cut(s)	282
BanI	GGYRCC	1 cut(s)	892
BarI	GAAGNNNNNNTAC	2 cut(s)	454, 486
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	4 cut(s)	485, 731, 840, 916
BceAI	ACGGC	1 cut(s)	454
BciT130I	CCWGG	1 cut(s)	843
BcoDI	GTCTC	2 cut(s)	87, 670
BfaI	CTAG	2 cut(s)	389, 585
BfrI	CTTAAG	1 cut(s)	683
BisI	GCNGC	2 cut(s)	6, 9
BlsI	GCNGC	2 cut(s)	7, 10
Bme1390I	CCNGG	1 cut(s)	843
Bme18I	GGWCC	1 cut(s)	536
BmgT120I	GGNCC	2 cut(s)	536, 839
BmiI	GGNNCC	2 cut(s)	840, 894
BmrFI	CCNGG	1 cut(s)	843
BmsI	GCATC	1 cut(s)	476
BpmI	CTGGAG	1 cut(s)	342
BsaAI	YACGTR	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	395
BsaWI	WCCGGW	1 cut(s)	635
Bsc4I	CCNNNNNNNGG	1 cut(s)	552
Bse1I	ACTGG	1 cut(s)	782
Bse21I	CCTNAGG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	843
BseDI	CCNNGG	1 cut(s)	395
BseGI	GGATG	3 cut(s)	253, 742, 790
BseLI	CCNNNNNNNGG	1 cut(s)	552
BseNI	ACTGG	1 cut(s)	782
BseXI	GCAGC	1 cut(s)	20
BshFI	GGCC	1 cut(s)	841
BshNI	GGYRCC	1 cut(s)	892
BsiSI	CCGG	1 cut(s)	636
BslFI	GGGAC	3 cut(s)	9, 18, 212
BslI	CCNNNNNNNGG	1 cut(s)	552
BsmAI	GTCTC	2 cut(s)	87, 670
BsmFI	GGGAC	3 cut(s)	9, 18, 212
BsnI	GGCC	1 cut(s)	841
Bso31I	GGTCTC	1 cut(s)	87
Bsp143I	GATC	4 cut(s)	274, 442, 623, 808
BspACI	CCGC	4 cut(s)	5, 55, 86, 174
BspANI	GGCC	1 cut(s)	841
BspLI	GGNNCC	2 cut(s)	840, 894
BspPI	GGATC	3 cut(s)	269, 437, 631
BspT107I	GGYRCC	1 cut(s)	892
BspTI	CTTAAG	1 cut(s)	683
BspTNI	GGTCTC	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	782
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	4 cut(s)	274, 442, 623, 808
BssT1I	CCWWGG	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	843
Bst4CI	ACNGT	3 cut(s)	23, 81, 744
BstAFI	CTTAAG	1 cut(s)	683
BstBAI	YACGTR	1 cut(s)	187
BstC8I	GCNNGC	3 cut(s)	386, 427, 861
BstDEI	CTNAG	2 cut(s)	282, 451
BstF5I	GGATG	3 cut(s)	253, 742, 790
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	4 cut(s)	277, 445, 626, 811
BstMAI	GTCTC	2 cut(s)	87, 670
BstMBI	GATC	4 cut(s)	274, 442, 623, 808
BstMWI	GCNNNNNNNGC	1 cut(s)	865
BstNI	CCWGG	1 cut(s)	843
BstSCI	CCNGG	1 cut(s)	841
BstSNI	TACGTA	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	20
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	841
BtsCI	GGATG	3 cut(s)	253, 742, 790
Cac8I	GCNNGC	3 cut(s)	386, 427, 861
CfoI	GCGC	1 cut(s)	384
Cfr13I	GGNCC	2 cut(s)	536, 839
Csp6I	GTAC	3 cut(s)	184, 664, 823
CviAII	CATG	2 cut(s)	195, 864
CviJI	RGCY	9 cut(s)	208, 239, 308, 400, 413, 425, 455, 682, 841
CviKI_1	RGCY	9 cut(s)	208, 239, 308, 400, 413, 425, 455, 682, 841
CviQI	GTAC	3 cut(s)	184, 664, 823
DdeI	CTNAG	2 cut(s)	282, 451
DpnI	GATC	4 cut(s)	276, 444, 625, 810
DpnII	GATC	4 cut(s)	274, 442, 623, 808
Eco105I	TACGTA	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	395
Eco31I	GGTCTC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	536
Eco81I	CCTNAGG	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	841
EcoT14I	CCWWGG	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	2 cut(s)	198, 867
FaqI	GGGAC	3 cut(s)	9, 18, 212
FatI	CATG	2 cut(s)	194, 863
FauI	CCCGC	2 cut(s)	62, 167
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	3 cut(s)	260, 749, 777
Fsp4HI	GCNGC	2 cut(s)	6, 9
FspBI	CTAG	2 cut(s)	389, 585
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	2 cut(s)	6, 9
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	841
HapII	CCGG	1 cut(s)	636
HhaI	GCGC	1 cut(s)	384
Hin1II	CATG	2 cut(s)	198, 867
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	2 cut(s)	292, 302
HpaII	CCGG	1 cut(s)	636
HphI	GGTGA	4 cut(s)	36, 65, 685, 937
Hpy166II	GTNNAC	1 cut(s)	823
Hpy188I	TCNGA	1 cut(s)	913
Hpy188III	TCNNGA	6 cut(s)	272, 359, 408, 506, 568, 755
Hpy8I	GTNNAC	1 cut(s)	823
HpyAV	CCTTC	7 cut(s)	25, 46, 565, 761, 761, 866, 870
HpyCH4III	ACNGT	3 cut(s)	23, 81, 744
HpyCH4IV	ACGT	3 cut(s)	186, 266, 825
HpyCH4V	TGCA	3 cut(s)	142, 467, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	865
HpyF3I	CTNAG	2 cut(s)	282, 451
HpySE526I	ACGT	3 cut(s)	186, 266, 825
Hsp92II	CATG	2 cut(s)	198, 867
HspAI	GCGC	1 cut(s)	382
Kzo9I	GATC	4 cut(s)	274, 442, 623, 808
LmnI	GCTCC	1 cut(s)	914
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	1 cut(s)	476
MaeI	CTAG	2 cut(s)	389, 585
MaeII	ACGT	3 cut(s)	186, 266, 825
MaeIII	GTNAC	2 cut(s)	262, 496
MalI	GATC	4 cut(s)	276, 444, 625, 810
MboI	GATC	4 cut(s)	274, 442, 623, 808
MboII	GAAGA	3 cut(s)	83, 183, 212
MluCI	AATT	5 cut(s)	100, 342, 517, 646, 881
MlyI	GAGTC	1 cut(s)	296
MnlI	CCTC	6 cut(s)	81, 164, 173, 288, 366, 527
MroXI	GAANNNNTTC	2 cut(s)	219, 771
MseI	TTAA	2 cut(s)	632, 684
MslI	CAYNNNNRTG	1 cut(s)	147
MspCI	CTTAAG	1 cut(s)	683
MspI	CCGG	1 cut(s)	636
MspR9I	CCNGG	1 cut(s)	843
MvaI	CCWGG	1 cut(s)	843
MwoI	GCNNNNNNNGC	1 cut(s)	865
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	4 cut(s)	274, 442, 623, 808
NlaIII	CATG	2 cut(s)	198, 867
NlaIV	GGNNCC	2 cut(s)	840, 894
NmeAIII	GCCGAG	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	262
PdmI	GAANNNNTTC	2 cut(s)	219, 771
PfeI	GAWTC	1 cut(s)	292
PflMI	CCANNNNNTGG	1 cut(s)	552
PkrI	GCNGC	2 cut(s)	7, 10
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
Ppu21I	YACGTR	1 cut(s)	187
PsiI	TTATAA	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	841
PspGI	CCWGG	1 cut(s)	841
PspN4I	GGNNCC	2 cut(s)	840, 894
PspPI	GGNCC	2 cut(s)	536, 839
RsaI	GTAC	3 cut(s)	185, 665, 824
RsaNI	GTAC	3 cut(s)	184, 664, 823
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	2 cut(s)	632, 684
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	4 cut(s)	274, 442, 623, 808
Sau96I	GGNCC	2 cut(s)	536, 839
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	843
SfaNI	GCATC	1 cut(s)	476
SinI	GGWCC	1 cut(s)	536
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
SnaBI	TACGTA	1 cut(s)	187
Sse9I	AATT	5 cut(s)	100, 342, 517, 646, 881
SsiI	CCGC	4 cut(s)	5, 55, 86, 174
SspI	AATATT	2 cut(s)	512, 579
SspMI	CTAG	2 cut(s)	389, 585
StyD4I	CCNGG	1 cut(s)	841
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	3 cut(s)	23, 81, 744
TaiI	ACGT	3 cut(s)	189, 269, 828
TaqI	TCGA	3 cut(s)	94, 118, 373
TasI	AATT	5 cut(s)	100, 342, 517, 646, 881
TatI	WGTACW	1 cut(s)	663
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	2 cut(s)	632, 684
Tru9I	TTAA	2 cut(s)	632, 684
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	183, 228
TspGWI	ACGGA	2 cut(s)	94, 141
Van91I	CCANNNNNTGG	1 cut(s)	552
Vha464I	CTTAAG	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	536
XapI	RAATTY	1 cut(s)	646
XmnI	GAANNNNTTC	2 cut(s)	219, 771
XspI	CTAG	2 cut(s)	389, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.