Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005863

Physical Location & Seq

Genomic Coordinates Forward (+)

692225 .. 695808

Gene Structure 3584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G000910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGGCTTAAATTGTACAGAAATGAGTCTGTGCACTCTGCTTGTAGTGTAATTTGTGCTGTCAATGGAGGCCAGGGAGGGTATGTCTCTGCGTGGGTCGAGAAACCATATGAGTTTCTTCCGAATGGGAAAAGGGCTTACTTGGATGAACAAGATGTGGTCACGTTCCTCAATCCTCCTAAAGAGTTGATTCCTTTGGACTCGCTTCTTATAATCCTGCTGCATGTCATTGGTCAGAAAAAAATTGATGATATTCCCCAGGAAAGGTGCCGTCGGCTGCTGCACTTGCTAGAGCCTAGGCTGATCTCAAGAGCTTGGGAGATACCTAGCACACGATATGAAGAACCCAAGTTGATGAACAGAAGCTCATTTCAACTGTTGTCTAATGAAGATGGTGTCTCTCTTGAATATTATAATTGCCCAACAAGTGGAGGATCAATGCCCATTTCTTGGATAAACTTTTTCAAGACGGCAATTTTTCCTTGCAAGGATGGCAACGTATATGGACGATTTATTGTGGACAAATTTTACTGTATTTATCTGTGTCTAGCCTCGTGCATCTCTATTATGCGCATTTGCTATCCTGAAGGATTTTGTTTTCGGTTAAAGGACAACATGTCAAAAAGAATAAACAGACTAAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

24.77

Weight (kDa)

8.49

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73090 AT1G73090
fragaria_vesca	FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290
malus_domestica	MD09G1158700.v1.1
prunus_persica	Prupe.3G167100_v2.0.a1 Prupe.3G167100_v2.0.a1
pyrus_communis	pycom09g07730
rosa_chinensis	RchiOBHm_Chr1g0381181 RchiOBHm_Chr2g0150121
rosa_laevigata	RLG00000020468
rosa_multiflora	Rmu_sc0000156.1_g000009 Rmu_sc0009445.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097430
rosa_rugosa	Rorug02G0419300
rosa_samantha	Rh1AG306600 Rh1CG035500 Rh2AG477900 Rh2BG490500 Rh2CG464100 Rh2DG499300 Rh4AG247100 Rh5DG267800
rosa_wichuraiana	Rw2G039010 Rw5G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	212, 414
Acc16I	TGCGCA	1 cut(s)	572
AccB1I	GGYRCC	1 cut(s)	267
AccB7I	CCANNNNNTGG	2 cut(s)	428, 450
AclWI	GGATC	1 cut(s)	442
AcsI	RAATTY	1 cut(s)	524
AcuI	CTGAAG	1 cut(s)	606
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	3 cut(s)	264, 428, 450
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	3 cut(s)	374, 407, 466
AhdI	GACNNNNNGTC	1 cut(s)	616
AjnI	CCWGG	2 cut(s)	72, 258
AluBI	AGCT	2 cut(s)	314, 366
AluI	AGCT	2 cut(s)	314, 366
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	2 cut(s)	91, 403
Alw44I	GTGCAC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	442
AoxI	GGCC	1 cut(s)	70
ApaLI	GTGCAC	1 cut(s)	32
ApeKI	GCWGC	3 cut(s)	220, 277, 280
ApoI	RAATTY	1 cut(s)	524
AspA2I	CCTAGG	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	573
AvrII	CCTAGG	1 cut(s)	296
BaeGI	GKGCMC	1 cut(s)	36
BanI	GGYRCC	1 cut(s)	267
BauI	CACGAG	1 cut(s)	553
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	207, 264, 267
BccI	CCATC	2 cut(s)	386, 485
BceAI	ACGGC	2 cut(s)	255, 486
BciT130I	CCWGG	2 cut(s)	74, 260
BcoDI	GTCTC	2 cut(s)	91, 403
BfaI	CTAG	4 cut(s)	290, 297, 327, 548
BisI	GCNGC	3 cut(s)	221, 278, 281
BlnI	CCTAGG	1 cut(s)	296
BlsI	GCNGC	3 cut(s)	222, 279, 282
Bme1390I	CCNGG	2 cut(s)	74, 260
BmeRI	GACNNNNNGTC	1 cut(s)	616
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	2 cut(s)	74, 260
BmsI	GCATC	1 cut(s)	567
BpuEI	CTTGAG	1 cut(s)	292
BsaJI	CCNNGG	3 cut(s)	73, 258, 296
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	3 cut(s)	264, 428, 450
BseBI	CCWGG	2 cut(s)	74, 260
BseDI	CCNNGG	3 cut(s)	73, 258, 296
BseGI	GGATG	2 cut(s)	151, 496
BseLI	CCNNNNNNNGG	3 cut(s)	264, 428, 450
BseSI	GKGCMC	1 cut(s)	36
BseXI	GCAGC	3 cut(s)	207, 264, 267
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	36
BslI	CCNNNNNNNGG	3 cut(s)	264, 428, 450
BsmAI	GTCTC	2 cut(s)	91, 403
BsnI	GGCC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp1407I	TGTACA	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	303, 434
BspANI	GGCC	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	442
BspT107I	GGYRCC	1 cut(s)	267
BsrGI	TGTACA	1 cut(s)	15
BssECI	CCNNGG	3 cut(s)	73, 258, 296
BssMI	GATC	2 cut(s)	303, 434
BssSI	CACGAG	1 cut(s)	553
BssT1I	CCWWGG	1 cut(s)	296
Bst2BI	CACGAG	1 cut(s)	553
Bst2UI	CCWGG	2 cut(s)	74, 260
Bst4CI	ACNGT	2 cut(s)	378, 533
BstAUI	TGTACA	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	151, 496
BstHHI	GCGC	1 cut(s)	573
BstKTI	GATC	2 cut(s)	306, 437
BstMAI	GTCTC	2 cut(s)	91, 403
BstMBI	GATC	2 cut(s)	303, 434
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 492
BstNI	CCWGG	2 cut(s)	74, 260
BstNSI	RCATGY	2 cut(s)	227, 619
BstSCI	CCNGG	2 cut(s)	72, 258
BstSLI	GKGCMC	1 cut(s)	36
BstV1I	GCAGC	3 cut(s)	207, 264, 267
BsuRI	GGCC	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	151, 496
CfoI	GCGC	1 cut(s)	573
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	2 cut(s)	224, 616
CviJI	RGCY	9 cut(s)	7, 72, 137, 277, 295, 301, 314, 366, 551
CviKI_1	RGCY	9 cut(s)	7, 72, 137, 277, 295, 301, 314, 366, 551
CviQI	GTAC	1 cut(s)	16
DpnI	GATC	2 cut(s)	305, 436
DpnII	GATC	2 cut(s)	303, 434
DriI	GACNNNNNGTC	1 cut(s)	616
Eam1105I	GACNNNNNGTC	1 cut(s)	616
Eco130I	CCWWGG	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	606
EcoRII	CCWGG	2 cut(s)	72, 258
EcoT14I	CCWWGG	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	2 cut(s)	227, 619
FatI	CATG	2 cut(s)	223, 615
FauNDI	CATATG	1 cut(s)	109
Fnu4HI	GCNGC	3 cut(s)	221, 278, 281
FokI	GGATG	2 cut(s)	158, 503
Fsp4HI	GCNGC	3 cut(s)	221, 278, 281
FspAI	RTGCGCAY	1 cut(s)	572
FspBI	CTAG	4 cut(s)	290, 297, 327, 548
FspI	TGCGCA	1 cut(s)	572
GlaI	GCGC	1 cut(s)	572
GluI	GCNGC	3 cut(s)	221, 278, 281
HaeIII	GGCC	1 cut(s)	72
HhaI	GCGC	1 cut(s)	573
Hin1II	CATG	2 cut(s)	227, 619
Hin6I	GCGC	1 cut(s)	571
HinP1I	GCGC	1 cut(s)	571
HinfI	GANTC	3 cut(s)	26, 190, 200
Hpy166II	GTNNAC	2 cut(s)	34, 520
Hpy188I	TCNGA	3 cut(s)	123, 237, 647
Hpy188III	TCNNGA	5 cut(s)	100, 309, 404, 466, 584
Hpy8I	GTNNAC	2 cut(s)	34, 520
Hpy99I	CGWCG	1 cut(s)	276
HpyAV	CCTTC	1 cut(s)	581
HpyCH4III	ACNGT	2 cut(s)	378, 533
HpyCH4IV	ACGT	2 cut(s)	164, 498
HpyCH4V	TGCA	5 cut(s)	34, 223, 283, 486, 558
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 492
HpySE526I	ACGT	2 cut(s)	164, 498
Hsp92II	CATG	2 cut(s)	227, 619
HspAI	GCGC	1 cut(s)	571
Kzo9I	GATC	2 cut(s)	303, 434
LpnPI	CCDG	6 cut(s)	59, 86, 230, 245, 272, 597
Lsp1109I	GCAGC	3 cut(s)	207, 264, 267
LweI	GCATC	1 cut(s)	567
MaeI	CTAG	4 cut(s)	290, 297, 327, 548
MaeII	ACGT	2 cut(s)	164, 498
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	2 cut(s)	305, 436
MboI	GATC	2 cut(s)	303, 434
MboII	GAAGA	3 cut(s)	110, 353, 401
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	6 cut(s)	11, 51, 243, 415, 474, 524
MlyI	GAGTC	2 cut(s)	35, 194
MnlI	CCTC	6 cut(s)	62, 71, 179, 186, 425, 562
MseI	TTAA	2 cut(s)	9, 605
MspR9I	CCNGG	2 cut(s)	74, 260
MvaI	CCWGG	2 cut(s)	74, 260
MwoI	GCNNNNNNNGC	2 cut(s)	286, 492
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	2 cut(s)	303, 434
NlaIII	CATG	2 cut(s)	227, 619
NlaIV	GGNNCC	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	160
NsbI	TGCGCA	1 cut(s)	572
NspI	RCATGY	2 cut(s)	227, 619
PciI	ACATGT	1 cut(s)	615
PfeI	GAWTC	1 cut(s)	190
PflMI	CCANNNNNTGG	2 cut(s)	428, 450
PkrI	GCNGC	3 cut(s)	222, 279, 282
PleI	GAGTC	2 cut(s)	34, 194
PpsI	GAGTC	2 cut(s)	34, 194
PscI	ACATGT	1 cut(s)	615
PsiI	TTATAA	2 cut(s)	212, 414
Psp6I	CCWGG	2 cut(s)	72, 258
PspGI	CCWGG	2 cut(s)	72, 258
PspN4I	GGNNCC	1 cut(s)	269
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SaqAI	TTAA	2 cut(s)	9, 605
SatI	GCNGC	3 cut(s)	221, 278, 281
Sau3AI	GATC	2 cut(s)	303, 434
SchI	GAGTC	2 cut(s)	35, 194
ScrFI	CCNGG	2 cut(s)	74, 260
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	6 cut(s)	167, 269, 316, 328, 368, 501
SfaNI	GCATC	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	6 cut(s)	11, 51, 243, 415, 474, 524
SspI	AATATT	1 cut(s)	410
SspMI	CTAG	4 cut(s)	290, 297, 327, 548
StyD4I	CCNGG	2 cut(s)	72, 258
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	2 cut(s)	378, 533
TaiI	ACGT	2 cut(s)	167, 501
TaqI	TCGA	1 cut(s)	99
TasI	AATT	6 cut(s)	11, 51, 243, 415, 474, 524
TatI	WGTACW	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	2 cut(s)	9, 605
Tru9I	TTAA	2 cut(s)	9, 605
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	3 cut(s)	220, 277, 280
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	4 cut(s)	162, 354, 371, 402
Van91I	CCANNNNNTGG	2 cut(s)	428, 450
VneI	GTGCAC	1 cut(s)	32
XapI	RAATTY	1 cut(s)	524
XceI	RCATGY	2 cut(s)	227, 619
XmaJI	CCTAGG	1 cut(s)	296
XspI	CTAG	4 cut(s)	290, 297, 327, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.