Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000156.1

Orthogroup ID

OG0005863

Physical Location & Seq

Genomic Coordinates Reverse (-)

47554 .. 50561

Gene Structure 3008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000156.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgtctggacaatggttatgcaggctgatctcaagagcttgggagatacctagcacacgatatgaagaacccaagttgatgaacagaagctcatttcaactgttgtctaatgaagatggtgtctctcttgaatattataattgcccaacaagtggaggtaactcaagtgctcactattatactggtgtagtttctgcagctctcacagtttggggttatagagtaactcgtgattctgagtttcacttaaatctcaagtttctgacacttattttcaatcatttaataggatcaatgcccatttcttggataaactttttcaagacgctagcattgggtggagaatgcaacttgggaagaggtaaagttttgagctttaatggttttgcctcggttttggctgctgattcacaaagcttagagagtgccataagatgtggtggtttagctaagaccaaagcttcttgtattaagaacatgctgagttgtttgctggagaagaaggaaaagctttgcttggaatacctgcaagatttgtcagttgatgaaattaaggctgagctctctcatttcaaaggaataggtccaaaaacggtgtttgagattgcaaaggctatggcttgggttccagttggagcagacaggaataagacatatcttcatcttaaccaatggataccagatgaacttaaatttgatctgaactgccttctgtatacacatggtaagctctgccgcaagtgcatcaagaaaggaggtagcactggtaagcagcaagaaaaggaatacgaggatatcaattccaacttcatgtatgcaatctgcaatgaagtcgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

279

Amino Acids

31.34

Weight (kDa)

8.41

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73090 AT1G73090
fragaria_vesca	FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290
malus_domestica	MD09G1158700.v1.1
prunus_persica	Prupe.3G167100_v2.0.a1 Prupe.3G167100_v2.0.a1
pyrus_communis	pycom09g07730
rosa_chinensis	RchiOBHm_Chr1g0381181 RchiOBHm_Chr2g0150121
rosa_laevigata	RLG00000020468
rosa_multiflora	Rmu_sc0000156.1_g000009 Rmu_sc0009445.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097430
rosa_rugosa	Rorug02G0419300
rosa_samantha	Rh1AG306600 Rh1CG035500 Rh2AG477900 Rh2BG490500 Rh2CG464100 Rh2DG499300 Rh4AG247100 Rh5DG267800
rosa_wichuraiana	Rw2G039010 Rw5G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	138
Acc36I	ACCTGC	1 cut(s)	534
AccB7I	CCANNNNNTGG	2 cut(s)	152, 306
AccI	GTMKAC	1 cut(s)	716
AciI	CCGC	1 cut(s)	736
AclWI	GGATC	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	692
AfiI	CCNNNNNNNGG	2 cut(s)	152, 306
AgsI	TTSAA	5 cut(s)	98, 131, 277, 322, 574
Alw21I	GWGCWC	2 cut(s)	172, 564
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	298
ApeKI	GCWGC	3 cut(s)	197, 401, 772
ApoI	RAATTY	1 cut(s)	692
AspS9I	GGNCC	1 cut(s)	584
AsuNHI	GCTAGC	1 cut(s)	328
AvaII	GGWCC	1 cut(s)	584
BanII	GRGCYC	1 cut(s)	564
BauI	CACGAG	1 cut(s)	228
Bbv12I	GWGCWC	2 cut(s)	172, 564
BbvI	GCAGC	3 cut(s)	209, 388, 784
BccI	CCATC	1 cut(s)	110
BcgI	CGANNNNNNTGC	1 cut(s)	814
BciVI	GTATCC	1 cut(s)	669
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	2 cut(s)	51, 329
BfmI	CTRYAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	534
BfuI	GTATCC	1 cut(s)	669
BisI	GCNGC	4 cut(s)	198, 402, 736, 773
BlpI	GCTNAGC	1 cut(s)	558
BlsI	GCNGC	4 cut(s)	199, 403, 737, 774
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	1 cut(s)	627
BmsI	GCATC	1 cut(s)	753
BmtI	GCTAGC	1 cut(s)	332
BpmI	CTGGAG	1 cut(s)	515
Bpu1102I	GCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	3 cut(s)	16, 148, 239
BsaJI	CCNNGG	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 306
Bse1I	ACTGG	3 cut(s)	187, 629, 769
Bse3DI	GCAATG	1 cut(s)	832
BseDI	CCNNGG	1 cut(s)	390
BseLI	CCNNNNNNNGG	2 cut(s)	152, 306
BseMI	GCAATG	1 cut(s)	832
BseMII	CTCAG	3 cut(s)	228, 473, 549
BseNI	ACTGG	3 cut(s)	187, 629, 769
BseXI	GCAGC	3 cut(s)	209, 388, 784
BsiHKAI	GWGCWC	2 cut(s)	172, 564
BslI	CCNNNNNNNGG	2 cut(s)	152, 306
BsmAI	GTCTC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	350
Bsp1286I	GDGCHC	2 cut(s)	172, 564
Bsp143I	GATC	3 cut(s)	27, 290, 697
Bsp1720I	GCTNAGC	1 cut(s)	558
BspACI	CCGC	1 cut(s)	736
BspCNI	CTCAG	3 cut(s)	229, 474, 550
BspLI	GGNNCC	1 cut(s)	627
BspMAI	CTGCAG	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	534
BspOI	GCTAGC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	832
BsrI	ACTGG	3 cut(s)	187, 629, 769
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	3 cut(s)	27, 290, 697
BssNAI	GTATAC	1 cut(s)	717
BssSI	CACGAG	1 cut(s)	228
Bst1107I	GTATAC	1 cut(s)	717
Bst2BI	CACGAG	1 cut(s)	228
Bst4CI	ACNGT	3 cut(s)	102, 208, 595
Bst6I	CTCTTC	1 cut(s)	352
BstC8I	GCNNGC	2 cut(s)	23, 330
BstDEI	CTNAG	5 cut(s)	237, 418, 450, 482, 558
BstKTI	GATC	3 cut(s)	30, 293, 700
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	3 cut(s)	27, 290, 697
BstMWI	GCNNNNNNNGC	1 cut(s)	741
BstNSI	RCATGY	1 cut(s)	481
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	209, 388, 784
BstZ17I	GTATAC	1 cut(s)	717
BsuI	GTATCC	1 cut(s)	669
BtsIMutI	CAGTG	1 cut(s)	762
BveI	ACCTGC	1 cut(s)	534
Cac8I	GCNNGC	2 cut(s)	23, 330
Cfr13I	GGNCC	1 cut(s)	584
CseI	GACGC	1 cut(s)	334
CviAII	CATG	3 cut(s)	478, 722, 811
DdeI	CTNAG	5 cut(s)	237, 418, 450, 482, 558
DpnI	GATC	3 cut(s)	29, 292, 699
DpnII	GATC	3 cut(s)	27, 290, 697
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
Ecl136II	GAGCTC	1 cut(s)	562
Eco24I	GRGCYC	1 cut(s)	564
Eco32I	GATATC	1 cut(s)	796
Eco47I	GGWCC	1 cut(s)	584
Eco53kI	GAGCTC	1 cut(s)	562
EcoICRI	GAGCTC	1 cut(s)	562
EcoRV	GATATC	1 cut(s)	796
EcoT38I	GRGCYC	1 cut(s)	564
FaeI	CATG	3 cut(s)	481, 725, 814
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FatI	CATG	3 cut(s)	477, 721, 810
FblI	GTMKAC	1 cut(s)	716
Fnu4HI	GCNGC	4 cut(s)	198, 402, 736, 773
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	4 cut(s)	198, 402, 736, 773
FspBI	CTAG	2 cut(s)	51, 329
GluI	GCNGC	4 cut(s)	198, 402, 736, 773
GsuI	CTGGAG	1 cut(s)	515
HgaI	GACGC	1 cut(s)	334
Hin1II	CATG	3 cut(s)	481, 725, 814
HindIII	AAGCTT	3 cut(s)	415, 459, 509
HinfI	GANTC	2 cut(s)	233, 407
Hpy166II	GTNNAC	1 cut(s)	717
Hpy188I	TCNGA	3 cut(s)	238, 264, 702
Hpy188III	TCNNGA	6 cut(s)	6, 33, 128, 230, 322, 748
Hpy8I	GTNNAC	1 cut(s)	717
HpyAV	CCTTC	2 cut(s)	496, 719
HpyCH4III	ACNGT	3 cut(s)	102, 208, 595
HpyCH4V	TGCA	8 cut(s)	21, 197, 348, 529, 608, 744, 818, 825
HpyF10VI	GCNNNNNNNGC	1 cut(s)	741
HpyF3I	CTNAG	5 cut(s)	237, 418, 450, 482, 558
Hsp92II	CATG	3 cut(s)	481, 725, 814
Kzo9I	GATC	3 cut(s)	27, 290, 697
LmnI	GCTCC	1 cut(s)	635
LpnPI	CCDG	8 cut(s)	7, 168, 479, 539, 628, 642, 693, 750
Lsp1109I	GCAGC	3 cut(s)	209, 388, 784
LweI	GCATC	1 cut(s)	753
MaeI	CTAG	2 cut(s)	51, 329
MaeIII	GTNAC	2 cut(s)	158, 223
MalI	GATC	3 cut(s)	29, 292, 699
MboI	GATC	3 cut(s)	27, 290, 697
MboII	GAAGA	5 cut(s)	77, 125, 369, 511, 650
MhlI	GDGCHC	2 cut(s)	172, 564
MluCI	AATT	4 cut(s)	139, 549, 692, 799
MmeI	TCCRAC	2 cut(s)	613, 828
MnlI	CCTC	5 cut(s)	149, 353, 400, 749, 784
MseI	TTAA	7 cut(s)	248, 284, 378, 471, 552, 666, 690
Mva1269I	GAATGC	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	741
NdeII	GATC	3 cut(s)	27, 290, 697
NheI	GCTAGC	1 cut(s)	328
NlaIII	CATG	3 cut(s)	481, 725, 814
NlaIV	GGNNCC	1 cut(s)	627
NspI	RCATGY	1 cut(s)	481
PctI	GAATGC	1 cut(s)	350
PfeI	GAWTC	2 cut(s)	233, 407
PflMI	CCANNNNNTGG	2 cut(s)	152, 306
PkrI	GCNGC	4 cut(s)	199, 403, 737, 774
PsiI	TTATAA	1 cut(s)	138
Psp124BI	GAGCTC	1 cut(s)	564
PspN4I	GGNNCC	1 cut(s)	627
PspPI	GGNCC	1 cut(s)	584
PstI	CTGCAG	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	564
SaqAI	TTAA	7 cut(s)	248, 284, 378, 471, 552, 666, 690
SatI	GCNGC	4 cut(s)	198, 402, 736, 773
Sau3AI	GATC	3 cut(s)	27, 290, 697
Sau96I	GGNCC	1 cut(s)	584
SduI	GDGCHC	2 cut(s)	172, 564
SfaNI	GCATC	1 cut(s)	753
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	584
SmlI	CTYRAG	3 cut(s)	31, 163, 254
SmoI	CTYRAG	3 cut(s)	31, 163, 254
Sse9I	AATT	4 cut(s)	139, 549, 692, 799
SsiI	CCGC	1 cut(s)	736
SspI	AATATT	1 cut(s)	134
SspMI	CTAG	2 cut(s)	51, 329
SstI	GAGCTC	1 cut(s)	564
TaaI	ACNGT	3 cut(s)	102, 208, 595
TasI	AATT	4 cut(s)	139, 549, 692, 799
TauI	GCSGC	1 cut(s)	738
TfiI	GAWTC	2 cut(s)	233, 407
Tru1I	TTAA	7 cut(s)	248, 284, 378, 471, 552, 666, 690
Tru9I	TTAA	7 cut(s)	248, 284, 378, 471, 552, 666, 690
TscAI	CASTG	1 cut(s)	769
TseI	GCWGC	3 cut(s)	197, 401, 772
TspDTI	ATGAA	7 cut(s)	78, 95, 126, 561, 650, 699, 799
TspRI	CASTG	1 cut(s)	769
Van91I	CCANNNNNTGG	2 cut(s)	152, 306
VpaK11BI	GGWCC	1 cut(s)	584
XapI	RAATTY	1 cut(s)	692
XceI	RCATGY	1 cut(s)	481
XmiI	GTMKAC	1 cut(s)	716
XspI	CTAG	2 cut(s)	51, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.