FvH4_6g37351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011581
Physical Location & Seq
Forward (+)
29422624 .. 29425255
2632 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37351.t1

Sequence Viewer

Length: 1050 bp
ATGGCAGTGATTGTTGGTTTAAGAGAGCTCCTCCGCCTCCCGAGGCTTCTTGCGGTGGTTAAGAGCATGACTTTAGTGGTCTCTTCCCGACCTGTTTTCGTGGTCGATCTCTGCCCCGGCGGTGGCAGGCTTGATTTCCCTCTGCTTTTCCTTCCTTTTCCCATCACCGATGCCCAGATCTTCCTACTCCTTCAATCTCAGATAACCTATCCCTCTTTTTCTCCTCTTTTTCCAATCTCAAATTCTTCACATGGGTGCACATCTTTCTCATCAATCAGTATCCTCAACGAAAGTTCACCGATTTGGTACTCCGAATTCGGTGTTGTATCGTATATCATACAACGGCATGCCTGCGATTCAGCGGCTGCCGCTCTCGTTTCCTCTTTCTCTTTTTGGCTTTCTTTGGTTACTGTTCTGTCTGGCAATTCGTTGCCAGGCGTTATGCTGATGATGTTGCATGATGTTTTGTATGGTTTTGAGGTTGGACAATCACAGATTGGATGGGATTTGGTTTGTTCAAGTCTTTTGGTTGCAGTAGCCGTGACGTCTCTGCGTCACATAAGGATTCTGTTTGTGGCTTTGTTAGCACAAGGTTTTTCCTTCTCCTGTTCTGCAATCAAGCTGAACCTGGTGCGGTGTTCTCGTGTTAGGAAGTTTTCGGAGTTCTCGGAGATTCCGGCATTCTCGGTGACGTCTCTGTGTCACCGGAAGTATCAATACGTGGCGATGGTCGTGTCGACGCGTGTCGTCCTTCCCTGCCTTGGTTGGTTTGCTGGATGTTTGGATAACGATGGGCTGTTTGACTCTCGCAGTCTCACCTCTCTCGACTCATCTCTCGATTCTCACCTCACCTCATCTGTCTCGTCGTCGACTCGACAGCACCTCCGCCACCTTGACTTCGCAACACCTCGCCACCTCCGCCACCTCGACTCAGCTTCCAGAACTGGGCAACACCTCACCTCTCTCGCCATCGACTCGGCAGTGCCAATTTCAGCTTCAAGAACTGGGCAACACCTCGACTTCGCAGTGCCTCGACTCAGCAGCGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

350

Amino Acids

38.13

Weight (kDa)

8.62

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 548, 695
AccBSI CCGCTC 1 cut(s) 371
AccI GTMKAC 2 cut(s) 737, 869
AccII CGCG 1 cut(s) 742
AciI CCGC 8 cut(s) 34, 53, 120, 362, 369, 634, 886, 919
AcsI RAATTY 2 cut(s) 241, 314
AcyI GRCGYC 2 cut(s) 545, 692
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 3 cut(s) 122, 761, 945
AflIII ACRYGT 1 cut(s) 740
AgsI TTSAA 3 cut(s) 194, 519, 999
AjnI CCWGG 2 cut(s) 433, 627
AjuI GAANNNNNNNTTGG 4 cut(s) 226, 258, 979, 1011
AleI CACNNNNGTG 1 cut(s) 253
AluBI AGCT 4 cut(s) 28, 622, 935, 995
AluI AGCT 4 cut(s) 28, 622, 935, 995
Alw21I GWGCWC 2 cut(s) 30, 260
Alw26I GTCTC 5 cut(s) 85, 552, 699, 818, 865
Alw44I GTGCAC 1 cut(s) 256
AlwNI CAGNNNCTG 1 cut(s) 365
Ama87I CYCGRG 1 cut(s) 40
ApaLI GTGCAC 1 cut(s) 256
ApeKI GCWGC 2 cut(s) 365, 1041
ApoI RAATTY 2 cut(s) 241, 314
AspLEI GCGC 1 cut(s) 1046
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 8 cut(s) 157, 288, 695, 700, 808, 836, 841, 949
AvaI CYCGRG 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 260
BanII GRGCYC 1 cut(s) 30
BarI GAAGNNNNNNTAC 2 cut(s) 701, 733
BauI CACGAG 1 cut(s) 642
Bbv12I GWGCWC 2 cut(s) 30, 260
BbvI GCAGC 1 cut(s) 352
BccI CCATC 5 cut(s) 170, 495, 721, 785, 977
BceAI ACGGC 2 cut(s) 359, 524
BciT130I CCWGG 2 cut(s) 435, 629
BciVI GTATCC 1 cut(s) 290
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 5 cut(s) 85, 552, 699, 818, 865
BfaI CTAG 1 cut(s) 1048
BfoI RGCGCY 1 cut(s) 1047
BfuI GTATCC 1 cut(s) 290
BglII AGATCT 1 cut(s) 177
BisI GCNGC 4 cut(s) 363, 366, 369, 1042
BlsI GCNGC 4 cut(s) 364, 367, 370, 1043
Bme1390I CCNGG 3 cut(s) 117, 435, 629
BmeT110I CYCGRG 1 cut(s) 40
BmrFI CCNGG 3 cut(s) 117, 435, 629
BmrI ACTGGG 2 cut(s) 954, 1014
BmsI GCATC 1 cut(s) 160
BmuI ACTGGG 2 cut(s) 954, 1014
BoxI GACNNNNGTC 1 cut(s) 743
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpuMI CCSGG 1 cut(s) 117
BsaAI YACGTR 1 cut(s) 721
BsaHI GRCGYC 2 cut(s) 545, 692
BsaI GGTCTC 1 cut(s) 85
BsaJI CCNNGG 3 cut(s) 41, 115, 760
BsaWI WCCGGW 1 cut(s) 705
BsaXI ACNNNNNCTCC 2 cut(s) 867, 897
Bsc4I CCNNNNNNNGG 3 cut(s) 122, 761, 945
Bse1I ACTGG 2 cut(s) 949, 1009
BseBI CCWGG 2 cut(s) 435, 629
BseDI CCNNGG 3 cut(s) 41, 115, 760
BseGI GGATG 2 cut(s) 506, 782
BseLI CCNNNNNNNGG 3 cut(s) 122, 761, 945
BseMII CTCAG 2 cut(s) 212, 945
BseNI ACTGG 2 cut(s) 949, 1009
BseRI GAGGAG 2 cut(s) 20, 213
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 1 cut(s) 352
Bsh1236I CGCG 1 cut(s) 742
BsiHKAI GWGCWC 2 cut(s) 30, 260
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 3 cut(s) 117, 677, 706
BslI CCNNNNNNNGG 3 cut(s) 122, 761, 945
BsmAI GTCTC 5 cut(s) 85, 552, 699, 818, 865
BsmBI CGTCTC 2 cut(s) 552, 699
BsmI GAATGC 1 cut(s) 680
Bso31I GGTCTC 1 cut(s) 85
BsoBI CYCGRG 1 cut(s) 40
Bsp1286I GDGCHC 2 cut(s) 30, 260
Bsp143I GATC 2 cut(s) 106, 177
BspACI CCGC 8 cut(s) 34, 53, 120, 362, 369, 634, 886, 919
BspCNI CTCAG 3 cut(s) 211, 944, 1050
BspFNI CGCG 1 cut(s) 742
BspTNI GGTCTC 1 cut(s) 85
BsrBI CCGCTC 1 cut(s) 371
BsrI ACTGG 2 cut(s) 949, 1009
BssECI CCNNGG 3 cut(s) 41, 115, 760
BssMI GATC 2 cut(s) 106, 177
BssNI GRCGYC 2 cut(s) 545, 692
BssSI CACGAG 1 cut(s) 642
BssT1I CCWWGG 1 cut(s) 760
Bst2BI CACGAG 1 cut(s) 642
Bst2UI CCWGG 2 cut(s) 435, 629
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 1 cut(s) 88
BstACI GRCGYC 2 cut(s) 545, 692
BstBAI YACGTR 1 cut(s) 721
BstC8I GCNNGC 3 cut(s) 128, 348, 352
BstDEI CTNAG 3 cut(s) 198, 931, 1037
BstF5I GGATG 2 cut(s) 506, 782
BstFNI CGCG 1 cut(s) 742
BstH2I RGCGCY 1 cut(s) 1047
BstHHI GCGC 1 cut(s) 1046
BstKTI GATC 2 cut(s) 109, 180
BstMAI GTCTC 5 cut(s) 85, 552, 699, 818, 865
BstMBI GATC 2 cut(s) 106, 177
BstMWI GCNNNNNNNGC 3 cut(s) 368, 584, 918
BstNI CCWGG 2 cut(s) 435, 629
BstNSI RCATGY 1 cut(s) 350
BstPAI GACNNNNGTC 1 cut(s) 743
BstSCI CCNGG 3 cut(s) 115, 433, 627
BstSLI GKGCMC 1 cut(s) 260
BstUI CGCG 1 cut(s) 742
BstV1I GCAGC 1 cut(s) 352
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
BsuI GTATCC 1 cut(s) 290
BtgZI GCGATG 1 cut(s) 740
BtsCI GGATG 2 cut(s) 506, 782
BtsI GCAGTG 3 cut(s) 12, 987, 1032
BtsIMutI CAGTG 3 cut(s) 12, 987, 1032
Cac8I GCNNGC 3 cut(s) 128, 348, 352
CaiI CAGNNNCTG 1 cut(s) 365
CfoI GCGC 1 cut(s) 1046
CseI GACGC 2 cut(s) 542, 748
CsiI ACCWGGT 1 cut(s) 627
Csp6I GTAC 1 cut(s) 307
CviAII CATG 4 cut(s) 67, 251, 347, 458
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 3 cut(s) 198, 931, 1037
DpnI GATC 2 cut(s) 108, 179
DpnII GATC 2 cut(s) 106, 177
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
EciI GGCGGA 3 cut(s) 23, 875, 908
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 760
Eco24I GRGCYC 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 85
Eco53kI GAGCTC 1 cut(s) 28
Eco88I CYCGRG 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 28
EcoRI GAATTC 1 cut(s) 314
EcoRII CCWGG 2 cut(s) 433, 627
EcoT14I CCWWGG 1 cut(s) 760
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 760
Esp3I CGTCTC 2 cut(s) 552, 699
FaeI CATG 4 cut(s) 70, 254, 350, 461
FaiI YATR 9 cut(s) 68, 252, 333, 338, 348, 443, 459, 471, 560
FatI CATG 4 cut(s) 66, 250, 346, 457
FblI GTMKAC 2 cut(s) 737, 869
Fnu4HI GCNGC 4 cut(s) 363, 366, 369, 1042
FokI GGATG 2 cut(s) 513, 789
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 4 cut(s) 363, 366, 369, 1042
FspBI CTAG 1 cut(s) 1048
GlaI GCGC 1 cut(s) 1045
GluI GCNGC 4 cut(s) 363, 366, 369, 1042
HaeII RGCGCY 1 cut(s) 1047
HapII CCGG 3 cut(s) 117, 677, 706
HgaI GACGC 2 cut(s) 542, 748
HhaI GCGC 1 cut(s) 1046
Hin1I GRCGYC 2 cut(s) 545, 692
Hin1II CATG 4 cut(s) 70, 254, 350, 461
Hin6I GCGC 1 cut(s) 1044
HinP1I GCGC 1 cut(s) 1044
HincII GTYRAC 2 cut(s) 738, 870
HindII GTYRAC 2 cut(s) 738, 870
HpaII CCGG 3 cut(s) 117, 677, 706
HphI GGTGA 8 cut(s) 157, 288, 695, 700, 808, 836, 841, 949
Hpy166II GTNNAC 4 cut(s) 258, 296, 738, 870
Hpy188I TCNGA 4 cut(s) 201, 313, 661, 670
Hpy188III TCNNGA 6 cut(s) 40, 87, 824, 836, 939, 999
Hpy8I GTNNAC 4 cut(s) 258, 296, 738, 870
Hpy99I CGWCG 3 cut(s) 742, 868, 871
HpyAV CCTTC 4 cut(s) 161, 200, 610, 761
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 3 cut(s) 545, 692, 720
HpyCH4V TGCA 4 cut(s) 258, 457, 533, 614
HpyF10VI GCNNNNNNNGC 3 cut(s) 368, 584, 918
HpyF3I CTNAG 3 cut(s) 198, 931, 1037
HpySE526I ACGT 3 cut(s) 545, 692, 720
Hsp92I GRCGYC 2 cut(s) 545, 692
Hsp92II CATG 4 cut(s) 70, 254, 350, 461
HspAI GCGC 1 cut(s) 1044
Kzo9I GATC 2 cut(s) 106, 177
LmnI GCTCC 1 cut(s) 33
Lsp1109I GCAGC 1 cut(s) 352
LweI GCATC 1 cut(s) 160
MabI ACCWGGT 1 cut(s) 627
MaeI CTAG 1 cut(s) 1048
MaeII ACGT 3 cut(s) 545, 692, 720
MaeIII GTNAC 5 cut(s) 406, 541, 554, 688, 701
MalI GATC 2 cut(s) 108, 179
MbiI CCGCTC 1 cut(s) 371
MboI GATC 2 cut(s) 106, 177
MboII GAAGA 3 cut(s) 75, 172, 237
MflI RGATCY 1 cut(s) 177
MhlI GDGCHC 2 cut(s) 30, 260
MluCI AATT 4 cut(s) 241, 314, 424, 987
MluI ACGCGT 1 cut(s) 740
MlyI GAGTC 6 cut(s) 797, 821, 865, 923, 968, 1029
MmeI TCCRAC 1 cut(s) 463
MseI TTAA 2 cut(s) 20, 60
MslI CAYNNNNRTG 1 cut(s) 253
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 3 cut(s) 117, 677, 706
MspR9I CCNGG 3 cut(s) 117, 435, 629
Mva1269I GAATGC 1 cut(s) 680
MvaI CCWGG 2 cut(s) 435, 629
MvnI CGCG 1 cut(s) 742
MwoI GCNNNNNNNGC 3 cut(s) 368, 584, 918
NciI CCSGG 1 cut(s) 117
NdeII GATC 2 cut(s) 106, 177
NlaIII CATG 4 cut(s) 70, 254, 350, 461
NmeAIII GCCGAG 1 cut(s) 956
NmuCI GTSAC 4 cut(s) 541, 554, 688, 701
NspI RCATGY 1 cut(s) 350
OliI CACNNNNGTG 1 cut(s) 253
PaeI GCATGC 1 cut(s) 350
PctI GAATGC 1 cut(s) 680
PfeI GAWTC 4 cut(s) 356, 565, 673, 839
PkrI GCNGC 4 cut(s) 364, 367, 370, 1043
PleI GAGTC 6 cut(s) 797, 821, 865, 923, 968, 1029
PpsI GAGTC 6 cut(s) 797, 821, 865, 923, 968, 1029
Ppu21I YACGTR 1 cut(s) 721
PshAI GACNNNNGTC 1 cut(s) 743
Psp124BI GAGCTC 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 433, 627
PspGI CCWGG 2 cut(s) 433, 627
PstNI CAGNNNCTG 1 cut(s) 365
PsuI RGATCY 1 cut(s) 177
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
RseI CAYNNNNRTG 1 cut(s) 253
SacI GAGCTC 1 cut(s) 30
SalI GTCGAC 2 cut(s) 736, 868
SaqAI TTAA 2 cut(s) 20, 60
SatI GCNGC 4 cut(s) 363, 366, 369, 1042
Sau3AI GATC 2 cut(s) 106, 177
SchI GAGTC 6 cut(s) 797, 821, 865, 923, 968, 1029
ScrFI CCNGG 3 cut(s) 117, 435, 629
SduI GDGCHC 2 cut(s) 30, 260
SexAI ACCWGGT 1 cut(s) 627
SfaNI GCATC 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 253
SphI GCATGC 1 cut(s) 350
Sse9I AATT 4 cut(s) 241, 314, 424, 987
SsiI CCGC 8 cut(s) 34, 53, 120, 362, 369, 634, 886, 919
SspMI CTAG 1 cut(s) 1048
SstI GAGCTC 1 cut(s) 30
StyD4I CCNGG 3 cut(s) 115, 433, 627
StyI CCWWGG 1 cut(s) 760
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 3 cut(s) 548, 695, 723
TasI AATT 4 cut(s) 241, 314, 424, 987
TauI GCSGC 2 cut(s) 365, 371
TfiI GAWTC 4 cut(s) 356, 565, 673, 839
Tru1I TTAA 2 cut(s) 20, 60
Tru9I TTAA 2 cut(s) 20, 60
TscAI CASTG 3 cut(s) 12, 987, 1032
TseFI GTSAC 4 cut(s) 541, 554, 688, 701
TseI GCWGC 2 cut(s) 365, 1041
Tsp45I GTSAC 4 cut(s) 541, 554, 688, 701
TspRI CASTG 3 cut(s) 12, 987, 1032
VneI GTGCAC 1 cut(s) 256
XapI RAATTY 2 cut(s) 241, 314
XceI RCATGY 1 cut(s) 350
XmiI GTMKAC 2 cut(s) 737, 869
XspI CTAG 1 cut(s) 1048
ZraI GACGTC 2 cut(s) 546, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.