Rh6CG083100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011581
Physical Location & Seq
Forward (+)
9078216 .. 9078446
231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG083100.1

Sequence Viewer

Length: 231 bp
ATGAAATCCGTGAATCCAATCCATAGCCTATTGTCGTCGCCAGTGCGTTTTGAAGATCAAGGGGTGGCGCTAGAGAGATTTGGAGACCTTCCGGCTGCGCCGGAAGCCGAGCTCGCGGTGGAGCTTGCCGGTGTCGTTGAGGTGGAGAACGCGGTGGGGCTGCTTCGAGAGAAGTCTTTGGATTTGGTGGGCATCGATCTCGCCGATGATTTAAACTCTAGCGGCGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

7.96

Weight (kDa)

4.17

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 224
AccII CGCG 2 cut(s) 116, 152
AciI CCGC 3 cut(s) 116, 152, 222
AcyI GRCGYC 1 cut(s) 225
AgsI TTSAA 1 cut(s) 53
AluBI AGCT 2 cut(s) 112, 124
AluI AGCT 2 cut(s) 112, 124
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 78
ApeKI GCWGC 2 cut(s) 95, 160
AspLEI GCGC 3 cut(s) 70, 100, 227
BanI GGYRCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 82, 147
BcgI CGANNNNNNTGC 2 cut(s) 181, 215
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 2 cut(s) 71, 219
BfoI RGCGCY 2 cut(s) 71, 228
BisI GCNGC 3 cut(s) 96, 161, 223
BlsI GCNGC 3 cut(s) 97, 162, 224
BmiI GGNNCC 1 cut(s) 226
BmsI GCATC 1 cut(s) 201
Bsa29I ATCGAT 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 78
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 41
BseCI ATCGAT 1 cut(s) 195
BseNI ACTGG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 82, 147
Bsh1236I CGCG 2 cut(s) 116, 152
BshNI GGYRCC 1 cut(s) 224
BshVI ATCGAT 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 3 cut(s) 92, 101, 129
BsmAI GTCTC 1 cut(s) 78
Bso31I GGTCTC 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 2 cut(s) 55, 196
BspACI CCGC 3 cut(s) 116, 152, 222
BspDI ATCGAT 1 cut(s) 195
BspFNI CGCG 2 cut(s) 116, 152
BspLI GGNNCC 1 cut(s) 226
BspT107I GGYRCC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 1 cut(s) 41
BssAI RCCGGY 1 cut(s) 128
BssMI GATC 2 cut(s) 55, 196
BssNI GRCGYC 1 cut(s) 225
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 2 cut(s) 114, 126
BstFNI CGCG 2 cut(s) 116, 152
BstH2I RGCGCY 2 cut(s) 71, 228
BstHHI GCGC 3 cut(s) 70, 100, 227
BstKTI GATC 2 cut(s) 58, 199
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 2 cut(s) 55, 196
BstMWI GCNNNNNNNGC 2 cut(s) 104, 113
BstUI CGCG 2 cut(s) 116, 152
BstV1I GCAGC 2 cut(s) 82, 147
Bsu15I ATCGAT 1 cut(s) 195
BsuTUI ATCGAT 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 114, 126
CfoI GCGC 3 cut(s) 70, 100, 227
Cfr10I RCCGGY 1 cut(s) 128
ClaI ATCGAT 1 cut(s) 195
CviJI RGCY 6 cut(s) 27, 95, 107, 112, 124, 160
CviKI_1 RGCY 6 cut(s) 27, 95, 107, 112, 124, 160
DinI GGCGCC 1 cut(s) 226
DpnI GATC 2 cut(s) 57, 198
DpnII GATC 2 cut(s) 55, 196
DraI TTTAAA 1 cut(s) 213
Ecl136II GAGCTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 112
EcoT38I GRGCYC 1 cut(s) 114
EgeI GGCGCC 1 cut(s) 226
EheI GGCGCC 1 cut(s) 226
FaiI YATR 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 96, 161, 223
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 3 cut(s) 96, 161, 223
FspBI CTAG 2 cut(s) 71, 219
GlaI GCGC 3 cut(s) 69, 99, 226
GluI GCNGC 3 cut(s) 96, 161, 223
HaeII RGCGCY 2 cut(s) 71, 228
HapII CCGG 3 cut(s) 92, 101, 129
HhaI GCGC 3 cut(s) 70, 100, 227
Hin1I GRCGYC 1 cut(s) 225
Hin6I GCGC 3 cut(s) 68, 98, 225
HinP1I GCGC 3 cut(s) 68, 98, 225
HinfI GANTC 1 cut(s) 13
HpaII CCGG 3 cut(s) 92, 101, 129
Hpy188III TCNNGA 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 113
Hsp92I GRCGYC 1 cut(s) 225
HspAI GCGC 3 cut(s) 68, 98, 225
KasI GGCGCC 1 cut(s) 224
Kzo9I GATC 2 cut(s) 55, 196
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 4 cut(s) 54, 105, 114, 142
Lsp1109I GCAGC 2 cut(s) 82, 147
LweI GCATC 1 cut(s) 201
MaeI CTAG 2 cut(s) 71, 219
MalI GATC 2 cut(s) 57, 198
MboI GATC 2 cut(s) 55, 196
MboII GAAGA 1 cut(s) 65
MhlI GDGCHC 1 cut(s) 114
Mly113I GGCGCC 1 cut(s) 225
MnlI CCTC 1 cut(s) 133
MseI TTAA 1 cut(s) 212
MspI CCGG 3 cut(s) 92, 101, 129
MvnI CGCG 2 cut(s) 116, 152
MwoI GCNNNNNNNGC 2 cut(s) 104, 113
NarI GGCGCC 1 cut(s) 225
NdeII GATC 2 cut(s) 55, 196
NlaIV GGNNCC 1 cut(s) 226
NmeAIII GCCGAG 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 3 cut(s) 97, 162, 224
PluTI GGCGCC 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 226
SacI GAGCTC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 3 cut(s) 96, 161, 223
Sau3AI GATC 2 cut(s) 55, 196
SduI GDGCHC 1 cut(s) 114
SetI ASST 4 cut(s) 90, 114, 126, 144
SfaNI GCATC 1 cut(s) 201
SfoI GGCGCC 1 cut(s) 226
SsiI CCGC 3 cut(s) 116, 152, 222
SspDI GGCGCC 1 cut(s) 224
SspMI CTAG 2 cut(s) 71, 219
SstI GAGCTC 1 cut(s) 114
TaqI TCGA 2 cut(s) 166, 195
TauI GCSGC 1 cut(s) 225
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 1 cut(s) 48
TseI GCWGC 2 cut(s) 95, 160
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 48
XspI CTAG 2 cut(s) 71, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.