RchiOBHm_Chr2g0103511

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011581
Physical Location & Seq
Reverse (-)
15002852 .. 15003770
919 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47787

Sequence Viewer

Length: 438 bp
ATGGCGTTTTTGTCTGGTTTTGAGATTTGGTTGTTGGATTCTGCATGGGATTTGGTGTGTTCACCAGTTGCATTCCTCGTGGTGTCTCTGTATCACGCAATGGATCGGTTTGTGGCGGTGTTAGCACCAGCTATTTCCTTCTCCGTTGGGTCTACAATTGGGCTGAACCTGTGGTGGTGCTCCGATGTCTGGATGAACTGGGTGTATTCCAATTTTCTGATGGCAAACAGTACTGTGACGTCTCTGGGTCACTTAACTAGTCGACAGGTGGCTGGTTATGTTTATGCTGCTGTCCATTCCTCCCTTGGAGGGTTTGCTAATTGGATGGATAATGATGGGTTGTTCCCACTTGTTTTGTTTATCTTCTGTTTGTTTGCGTTTTCCCCACACTGTGGGCTTTGTAAGTGTGTTTGTGTTTGTAAAGTTTTGTTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.06

Weight (kDa)

5.61

Isoelectric Point (pI)

31.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 242
AccB7I CCANNNNNTGG 1 cut(s) 392
AccI GTMKAC 2 cut(s) 152, 262
AciI CCGC 1 cut(s) 116
AclWI GGATC 1 cut(s) 111
AcyI GRCGYC 1 cut(s) 239
AdeI CACNNNGTG 1 cut(s) 392
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 3 cut(s) 189, 309, 392
AhlI ACTAGT 1 cut(s) 257
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw21I GWGCWC 1 cut(s) 182
Alw26I GTCTC 2 cut(s) 90, 246
AlwI GGATC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 54
BauI CACGAG 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 274
BccI CCATC 3 cut(s) 214, 319, 329
BcoDI GTCTC 2 cut(s) 90, 246
BcuI ACTAGT 1 cut(s) 257
BfaI CTAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
BmcAI AGTACT 1 cut(s) 232
BmrI ACTGGG 1 cut(s) 208
BmuI ACTGGG 1 cut(s) 208
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 304
Bsc4I CCNNNNNNNGG 3 cut(s) 189, 309, 392
Bse1I ACTGG 2 cut(s) 65, 203
Bse3DI GCAATG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 2 cut(s) 198, 330
BseLI CCNNNNNNNGG 3 cut(s) 189, 309, 392
BseMI GCAATG 1 cut(s) 105
BseNI ACTGG 2 cut(s) 65, 203
BseXI GCAGC 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 182
BslI CCNNNNNNNGG 3 cut(s) 189, 309, 392
BsmAI GTCTC 2 cut(s) 90, 246
BsmBI CGTCTC 1 cut(s) 246
BsmI GAATGC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 1 cut(s) 116
BspPI GGATC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 2 cut(s) 65, 203
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 1 cut(s) 103
BssNI GRCGYC 1 cut(s) 239
BssSI CACGAG 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 304
Bst2BI CACGAG 1 cut(s) 77
Bst4CI ACNGT 3 cut(s) 230, 235, 392
BstACI GRCGYC 1 cut(s) 239
BstF5I GGATG 2 cut(s) 198, 330
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 2 cut(s) 90, 246
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 274
BtsCI GGATG 2 cut(s) 198, 330
BtsIMutI CAGTG 1 cut(s) 388
Csp6I GTAC 1 cut(s) 231
CspCI CAANNNNNGTGG 2 cut(s) 336, 371
CviAII CATG 1 cut(s) 45
CviJI RGCY 4 cut(s) 131, 163, 272, 397
CviKI_1 RGCY 4 cut(s) 131, 163, 272, 397
CviQI GTAC 1 cut(s) 231
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
DraIII CACNNNGTG 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 304
Esp3I CGTCTC 1 cut(s) 246
FaeI CATG 1 cut(s) 48
FaiI YATR 3 cut(s) 46, 279, 285
FatI CATG 1 cut(s) 44
FblI GTMKAC 2 cut(s) 152, 262
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 2 cut(s) 205, 337
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 1 cut(s) 258
GluI GCNGC 1 cut(s) 288
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 1 cut(s) 48
HincII GTYRAC 1 cut(s) 263
HindII GTYRAC 1 cut(s) 263
HinfI GANTC 1 cut(s) 38
HphI GGTGA 1 cut(s) 54
Hpy166II GTNNAC 3 cut(s) 62, 153, 263
Hpy188I TCNGA 2 cut(s) 184, 219
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 3 cut(s) 62, 153, 263
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 3 cut(s) 230, 235, 392
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 44, 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpySE526I ACGT 1 cut(s) 239
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 1 cut(s) 48
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 8 cut(s) 78, 141, 175, 182, 184, 230, 251, 258
Lsp1109I GCAGC 1 cut(s) 274
MaeI CTAG 1 cut(s) 258
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 2 cut(s) 235, 248
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 1 cut(s) 355
MfeI CAATTG 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 3 cut(s) 156, 211, 319
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 3 cut(s) 86, 302, 310
MseI TTAA 1 cut(s) 254
MunI CAATTG 1 cut(s) 156
Mva1269I GAATGC 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 1 cut(s) 103
NlaIII CATG 1 cut(s) 48
NmuCI GTSAC 2 cut(s) 235, 248
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 392
PkrI GCNGC 1 cut(s) 289
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SalI GTCGAC 1 cut(s) 261
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 1 cut(s) 103
ScaI AGTACT 1 cut(s) 232
SduI GDGCHC 1 cut(s) 182
SetI ASST 4 cut(s) 133, 171, 242, 270
SpeI ACTAGT 1 cut(s) 257
Sse9I AATT 3 cut(s) 156, 211, 319
SsiI CCGC 1 cut(s) 116
SspMI CTAG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 3 cut(s) 230, 235, 392
TaiI ACGT 1 cut(s) 242
TaqI TCGA 1 cut(s) 262
TasI AATT 3 cut(s) 156, 211, 319
TatI WGTACW 1 cut(s) 230
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 1 cut(s) 395
TseFI GTSAC 2 cut(s) 235, 248
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 2 cut(s) 235, 248
TspDTI ATGAA 1 cut(s) 209
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 1 cut(s) 395
Van91I CCANNNNNTGG 1 cut(s) 392
XcmI CCANNNNNNNNNTGG 2 cut(s) 217, 302
XmiI GTMKAC 2 cut(s) 152, 262
XspI CTAG 1 cut(s) 258
ZraI GACGTC 1 cut(s) 240
ZrmI AGTACT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.