Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0011581

Physical Location & Seq

Genomic Coordinates Forward (+)

50683453 .. 50684037

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003610

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCAGACACAAGGCCCTTGCTTCCGTCCGACCTCGATGCCCTTCCCACCGCCTACACTCCTCTCCCCGGTGGATCCTCCTCTCAGGAGATCCGGCGGATACACGTGAAGGAGGTTCTGGCAATGTTCGCCGGAGTGGTGATCGTTTCTTTGTTGGTGGTCATTAAAGCCTTAAAGGGAATACAGGTCAGGAGGGAAATGAGTACCATGCATGGGAGTGATAAGCCAATGTTATTGGCTGTATCATCAACCAAGGCAGAGATGTTGCAGGCCGTGACACGTGGCATGGCGGCCGGAGTGTCGGAGAAATCAAGCCATAATTGCAGAAGGAGAAGCAAGAAGAAGAGGATCTCCATAATTGCAGTATCCGTCGGCAATGTCGAGGTCGTCGTCTCGGTCAACTCCGTCTGTCATACCCGGCCTTTGGAAGGACCTTCTGGCCAAGCTCCACCACAAAGTCTACAGATTCTCAATCTCGCCAGCGTGTACCTCGATCTCTCTTCGAACGCTTTCTCCGACGAGATTCCGAGGAGCATCACCAACCTTGGTGACAGATTTCGATCAAGAAAGGATTGGCGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0004564 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0016787 GO:0016798 GO:0022622 GO:0030312 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071944 GO:0080022 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

DUF3357 Glyco_hydro_32C Glyco_hydro_32N

Protein Analysis

195

Amino Acids

21.11

Weight (kDa)

10.27

Isoelectric Point (pI)

60.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
INV_N	PF11837	19 - 108	2.1e-10	Beta-fructofuranosidase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011581)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37351
rosa_chinensis	RchiOBHm_Chr1g0356061 RchiOBHm_Chr2g0103511 RchiOBHm_Chr6g0274631
rosa_laevigata	RLG00000003610 RLG00000010694 RLG00000014651 RLG00000036824
rosa_rugosa	Rorug05G0017000
rosa_samantha	Rh2AG132200 Rh2CG170400 Rh3CG275500 Rh5AG366100 Rh6AG096000 Rh6CG083100 Rh6DG131400 Rh6DG194400 Rh7AG239100 Rh7DG245100 Rh7DG461100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	460
AciI	CCGC	3 cut(s)	51, 97, 290
AclWI	GGATC	4 cut(s)	69, 82, 85, 356
AcoI	YGGCCR	2 cut(s)	291, 439
AcvI	CACGTG	2 cut(s)	106, 281
AfaI	GTAC	2 cut(s)	205, 488
AfiI	CCNNNNNNNGG	4 cut(s)	68, 213, 424, 428
AflIII	ACRYGT	2 cut(s)	103, 278
AloI	GAACNNNNNNTCC	2 cut(s)	497, 529
AluBI	AGCT	1 cut(s)	446
AluI	AGCT	1 cut(s)	446
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	4 cut(s)	69, 82, 85, 356
AoxI	GGCC	5 cut(s)	14, 270, 291, 419, 439
Asp700I	GAANNNNTTC	1 cut(s)	509
AspS9I	GGNCC	2 cut(s)	15, 431
AsuC2I	CCSGG	2 cut(s)	69, 418
AsuHPI	GGTGA	3 cut(s)	151, 529, 560
AsuII	TTCGAA	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	431
BalI	TGGCCA	1 cut(s)	441
BamHI	GGATCC	1 cut(s)	74
BbrPI	CACGTG	2 cut(s)	106, 281
BceAI	ACGGC	1 cut(s)	257
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciVI	GTATCC	2 cut(s)	93, 376
BcnI	CCSGG	2 cut(s)	69, 418
BcoDI	GTCTC	1 cut(s)	397
BfmI	CTRYAG	1 cut(s)	461
BfuI	GTATCC	2 cut(s)	93, 376
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	2 cut(s)	69, 418
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	2 cut(s)	15, 431
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	69, 418
BmsI	GCATC	2 cut(s)	28, 543
Bpu14I	TTCGAA	1 cut(s)	503
BpuMI	CCSGG	2 cut(s)	69, 418
BsaAI	YACGTR	2 cut(s)	106, 281
BsaBI	GATNNNNATC	1 cut(s)	559
BsaJI	CCNNGG	4 cut(s)	67, 252, 527, 544
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 213, 424, 428
Bse3DI	GCAATG	2 cut(s)	129, 382
Bse8I	GATNNNNATC	1 cut(s)	559
BseDI	CCNNGG	4 cut(s)	67, 252, 527, 544
BseJI	GATNNNNATC	1 cut(s)	559
BseLI	CCNNNNNNNGG	4 cut(s)	68, 213, 424, 428
BseMI	GCAATG	2 cut(s)	129, 382
BseMII	CTCAG	1 cut(s)	98
BseRI	GAGGAG	3 cut(s)	51, 70, 544
BseX3I	CGGCCG	1 cut(s)	291
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	5 cut(s)	16, 272, 293, 421, 441
BsiEI	CGRYCG	1 cut(s)	294
BsiSI	CCGG	5 cut(s)	69, 94, 132, 294, 418
BslI	CCNNNNNNNGG	4 cut(s)	68, 213, 424, 428
BsmAI	GTCTC	1 cut(s)	397
BsmBI	CGTCTC	1 cut(s)	397
BsnI	GGCC	5 cut(s)	16, 272, 293, 421, 441
Bsp119I	TTCGAA	1 cut(s)	503
Bsp143I	GATC	6 cut(s)	74, 90, 141, 348, 493, 560
BspACI	CCGC	3 cut(s)	51, 97, 290
BspANI	GGCC	5 cut(s)	16, 272, 293, 421, 441
BspCNI	CTCAG	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	76
BspPI	GGATC	4 cut(s)	69, 82, 85, 356
BspT104I	TTCGAA	1 cut(s)	503
BsrDI	GCAATG	2 cut(s)	129, 382
BssECI	CCNNGG	4 cut(s)	67, 252, 527, 544
BssMI	GATC	6 cut(s)	74, 90, 141, 348, 493, 560
BssT1I	CCWWGG	2 cut(s)	252, 544
Bst6I	CTCTTC	2 cut(s)	338, 505
BstBAI	YACGTR	2 cut(s)	106, 281
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	270, 481
BstDEI	CTNAG	1 cut(s)	84
BstENI	CCTNNNNNAGG	1 cut(s)	426
BstKTI	GATC	6 cut(s)	77, 93, 144, 351, 496, 563
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	6 cut(s)	74, 90, 141, 348, 493, 560
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 321
BstSCI	CCNGG	2 cut(s)	67, 416
BstSFI	CTRYAG	1 cut(s)	461
BstX2I	RGATCY	3 cut(s)	74, 90, 348
BstYI	RGATCY	3 cut(s)	74, 90, 348
BstZI	CGGCCG	1 cut(s)	291
BsuI	GTATCC	2 cut(s)	93, 376
BsuRI	GGCC	5 cut(s)	16, 272, 293, 421, 441
Cac8I	GCNNGC	2 cut(s)	270, 481
Cfr13I	GGNCC	2 cut(s)	15, 431
Csp6I	GTAC	2 cut(s)	204, 487
CviAII	CATG	3 cut(s)	208, 212, 286
CviQI	GTAC	2 cut(s)	204, 487
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	6 cut(s)	76, 92, 143, 350, 495, 562
DpnII	GATC	6 cut(s)	74, 90, 141, 348, 493, 560
EaeI	YGGCCR	2 cut(s)	291, 439
EagI	CGGCCG	1 cut(s)	291
Eam1104I	CTCTTC	2 cut(s)	338, 505
EarI	CTCTTC	2 cut(s)	338, 505
EciI	GGCGGA	1 cut(s)	112
EclXI	CGGCCG	1 cut(s)	291
Eco130I	CCWWGG	2 cut(s)	252, 544
Eco47I	GGWCC	1 cut(s)	431
Eco52I	CGGCCG	1 cut(s)	291
Eco72I	CACGTG	2 cut(s)	106, 281
EcoNI	CCTNNNNNAGG	1 cut(s)	426
EcoO109I	RGGNCCY	2 cut(s)	15, 431
EcoT14I	CCWWGG	2 cut(s)	252, 544
EcoT22I	ATGCAT	1 cut(s)	213
ErhI	CCWWGG	2 cut(s)	252, 544
Esp3I	CGTCTC	1 cut(s)	397
FaeI	CATG	3 cut(s)	211, 215, 289
FaiI	YATR	6 cut(s)	209, 213, 287, 318, 356, 414
FatI	CATG	3 cut(s)	207, 211, 285
FblI	GTMKAC	1 cut(s)	460
Fnu4HI	GCNGC	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	291
GluI	GCNGC	1 cut(s)	291
HaeIII	GGCC	5 cut(s)	16, 272, 293, 421, 441
HapII	CCGG	5 cut(s)	69, 94, 132, 294, 418
Hin1II	CATG	3 cut(s)	211, 215, 289
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	2 cut(s)	466, 523
HpaII	CCGG	5 cut(s)	69, 94, 132, 294, 418
HphI	GGTGA	3 cut(s)	151, 529, 560
Hpy166II	GTNNAC	3 cut(s)	400, 461, 487
Hpy188I	TCNGA	4 cut(s)	31, 304, 517, 528
Hpy188III	TCNNGA	3 cut(s)	86, 190, 564
Hpy8I	GTNNAC	3 cut(s)	400, 461, 487
Hpy99I	CGWCG	3 cut(s)	374, 392, 521
HpyAV	CCTTC	6 cut(s)	53, 103, 321, 422, 444, 573
HpyCH4IV	ACGT	2 cut(s)	105, 280
HpyCH4V	TGCA	4 cut(s)	211, 268, 324, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 321
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	2 cut(s)	105, 280
Hsp92II	CATG	3 cut(s)	211, 215, 289
Kzo9I	GATC	6 cut(s)	74, 90, 141, 348, 493, 560
LmnI	GCTCC	2 cut(s)	451, 531
LweI	GCATC	2 cut(s)	28, 543
MaeII	ACGT	2 cut(s)	105, 280
MaeIII	GTNAC	2 cut(s)	274, 548
MalI	GATC	6 cut(s)	76, 92, 143, 350, 495, 562
MboI	GATC	6 cut(s)	74, 90, 141, 348, 493, 560
MboII	GAAGA	3 cut(s)	352, 355, 492
MflI	RGATCY	3 cut(s)	74, 90, 348
MlsI	TGGCCA	1 cut(s)	441
MluCI	AATT	2 cut(s)	319, 357
MluNI	TGGCCA	1 cut(s)	441
MmeI	TCCRAC	3 cut(s)	54, 282, 540
Mox20I	TGGCCA	1 cut(s)	441
Mph1103I	ATGCAT	1 cut(s)	213
MroXI	GAANNNNTTC	1 cut(s)	509
MscI	TGGCCA	1 cut(s)	441
MseI	TTAA	2 cut(s)	165, 173
MslI	CAYNNNNRTG	1 cut(s)	216
Msp20I	TGGCCA	1 cut(s)	441
MspI	CCGG	5 cut(s)	69, 94, 132, 294, 418
MspR9I	CCNGG	2 cut(s)	69, 418
MwoI	GCNNNNNNNGC	2 cut(s)	128, 321
NciI	CCSGG	2 cut(s)	69, 418
NdeII	GATC	6 cut(s)	74, 90, 141, 348, 493, 560
NlaIII	CATG	3 cut(s)	211, 215, 289
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	2 cut(s)	274, 548
NsiI	ATGCAT	1 cut(s)	213
NspV	TTCGAA	1 cut(s)	503
PcsI	WCGNNNNNNNCGW	3 cut(s)	378, 387, 513
PdmI	GAANNNNTTC	1 cut(s)	509
PfeI	GAWTC	2 cut(s)	466, 523
PkrI	GCNGC	1 cut(s)	292
PmaCI	CACGTG	2 cut(s)	106, 281
PmlI	CACGTG	2 cut(s)	106, 281
Ppu21I	YACGTR	2 cut(s)	106, 281
PpuMI	RGGWCCY	1 cut(s)	431
Psp5II	RGGWCCY	1 cut(s)	431
PspCI	CACGTG	2 cut(s)	106, 281
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	15, 431
PspPPI	RGGWCCY	1 cut(s)	431
PsuI	RGATCY	3 cut(s)	74, 90, 348
RsaI	GTAC	2 cut(s)	205, 488
RsaNI	GTAC	2 cut(s)	204, 487
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	165, 173
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	6 cut(s)	74, 90, 141, 348, 493, 560
Sau96I	GGNCC	2 cut(s)	15, 431
ScrFI	CCNGG	2 cut(s)	69, 418
SfaNI	GCATC	2 cut(s)	28, 543
SfcI	CTRYAG	1 cut(s)	461
SfuI	TTCGAA	1 cut(s)	503
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	2 cut(s)	319, 357
SsiI	CCGC	3 cut(s)	51, 97, 290
StyD4I	CCNGG	2 cut(s)	67, 416
StyI	CCWWGG	2 cut(s)	252, 544
TaiI	ACGT	2 cut(s)	108, 283
TaqI	TCGA	5 cut(s)	36, 381, 492, 503, 559
TaqII	GACCGA	1 cut(s)	385
TasI	AATT	2 cut(s)	319, 357
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	2 cut(s)	466, 523
Tru1I	TTAA	2 cut(s)	165, 173
Tru9I	TTAA	2 cut(s)	165, 173
TseFI	GTSAC	2 cut(s)	274, 548
Tsp45I	GTSAC	2 cut(s)	274, 548
TspGWI	ACGGA	3 cut(s)	15, 358, 394
VpaK11BI	GGWCC	1 cut(s)	431
XagI	CCTNNNNNAGG	1 cut(s)	426
XmiI	GTMKAC	1 cut(s)	460
XmnI	GAANNNNTTC	1 cut(s)	509
Zsp2I	ATGCAT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.