RchiOBHm_Chr6g0274631

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011581
Physical Location & Seq
Reverse (-)
36164722 .. 36165493
772 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24637

Sequence Viewer

Length: 501 bp
ATGTTTTCTTTGGTTACCGTTCCGCCTGGCATTTTCTTGCCTAGCGATCTGCTGATGGTGTTCGATGGCGTTTTGTCTAGTTTTGAGATTTGGTTGTTGGATTCTGCATGGGATTTGGTGTGTTCACTAGTTGCATTCCTCGTGGTGTCTCTGTATCACGCAATGGATCGGTTTGTGGCGGTGTTAGCACCAGCTATTTCCTTCTCCGTTGGGTCTACAATTGGGCTGAACCTGTGGTGGTGCTCCGATGTCGGGATGAACTGGGTGTATTCCAATTTTCTGATGGCAAACAGTACTGTGACGTCTCTGGATCACTTAACTAGTCGACAGGTGGCTGGTTATGTTTATGCTGCTGTCCTTTCCTCCCTTGGAGGGTTTGCTACTTGGATGGATAATGATGGGTTGTTCCCACTTGTTTTGTTTATCTTCTGTTTGTTTGCGTTTTCCCCACACTGTGGGCTTTGTAAGTGTGTTTGTGTTTGTAAAGTTTTGTTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.22

Weight (kDa)

4.47

Isoelectric Point (pI)

27.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 305
AccB7I CCANNNNNTGG 1 cut(s) 455
AccI GTMKAC 2 cut(s) 215, 325
AciI CCGC 2 cut(s) 23, 179
AclWI GGATC 2 cut(s) 174, 318
AcyI GRCGYC 1 cut(s) 302
AdeI CACNNNGTG 1 cut(s) 455
AfaI GTAC 1 cut(s) 295
AfiI CCNNNNNNNGG 3 cut(s) 252, 372, 455
AhlI ACTAGT 2 cut(s) 127, 320
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 2 cut(s) 153, 309
AlwI GGATC 2 cut(s) 174, 318
ApeKI GCWGC 1 cut(s) 350
BauI CACGAG 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 337
BccI CCATC 5 cut(s) 49, 59, 277, 382, 392
BciT130I CCWGG 1 cut(s) 27
BcoDI GTCTC 2 cut(s) 153, 309
BcuI ACTAGT 2 cut(s) 127, 320
BfaI CTAG 4 cut(s) 42, 78, 128, 321
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
BmcAI AGTACT 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 27
BmrI ACTGGG 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 271
BsaHI GRCGYC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 367
Bsc4I CCNNNNNNNGG 3 cut(s) 252, 372, 455
Bse1I ACTGG 1 cut(s) 266
Bse3DI GCAATG 1 cut(s) 168
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 2 cut(s) 261, 393
BseLI CCNNNNNNNGG 3 cut(s) 252, 372, 455
BseMI GCAATG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 266
BseXI GCAGC 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 245
BslI CCNNNNNNNGG 3 cut(s) 252, 372, 455
BsmAI GTCTC 2 cut(s) 153, 309
BsmBI CGTCTC 1 cut(s) 309
BsmI GAATGC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 3 cut(s) 46, 166, 310
BspACI CCGC 2 cut(s) 23, 179
BspPI GGATC 2 cut(s) 174, 318
BsrDI GCAATG 1 cut(s) 168
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 3 cut(s) 46, 166, 310
BssNI GRCGYC 1 cut(s) 302
BssSI CACGAG 1 cut(s) 140
BssT1I CCWWGG 1 cut(s) 367
Bst2BI CACGAG 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 4 cut(s) 19, 293, 298, 455
BstACI GRCGYC 1 cut(s) 302
BstEII GGTNACC 1 cut(s) 13
BstF5I GGATG 2 cut(s) 261, 393
BstKTI GATC 3 cut(s) 49, 169, 313
BstMAI GTCTC 2 cut(s) 153, 309
BstMBI GATC 3 cut(s) 46, 166, 310
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 1 cut(s) 27
BstPI GGTNACC 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 337
BtsCI GGATG 2 cut(s) 261, 393
BtsIMutI CAGTG 1 cut(s) 451
Csp6I GTAC 1 cut(s) 294
CspCI CAANNNNNGTGG 2 cut(s) 399, 434
CviAII CATG 1 cut(s) 108
CviJI RGCY 4 cut(s) 194, 226, 335, 460
CviKI_1 RGCY 4 cut(s) 194, 226, 335, 460
CviQI GTAC 1 cut(s) 294
DpnI GATC 3 cut(s) 48, 168, 312
DpnII GATC 3 cut(s) 46, 166, 310
DraIII CACNNNGTG 1 cut(s) 455
EciI GGCGGA 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 367
Eco91I GGTNACC 1 cut(s) 13
EcoO65I GGTNACC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 367
Esp3I CGTCTC 1 cut(s) 309
FaeI CATG 1 cut(s) 111
FaiI YATR 3 cut(s) 109, 342, 348
FatI CATG 1 cut(s) 107
FblI GTMKAC 2 cut(s) 215, 325
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 2 cut(s) 268, 400
Fsp4HI GCNGC 1 cut(s) 351
FspBI CTAG 4 cut(s) 42, 78, 128, 321
GluI GCNGC 1 cut(s) 351
Hin1I GRCGYC 1 cut(s) 302
Hin1II CATG 1 cut(s) 111
HincII GTYRAC 1 cut(s) 326
HindII GTYRAC 1 cut(s) 326
HinfI GANTC 1 cut(s) 101
Hpy166II GTNNAC 3 cut(s) 125, 216, 326
Hpy188I TCNGA 2 cut(s) 247, 282
Hpy188III TCNNGA 2 cut(s) 253, 308
Hpy8I GTNNAC 3 cut(s) 125, 216, 326
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 4 cut(s) 19, 293, 298, 455
HpyCH4IV ACGT 1 cut(s) 302
HpyCH4V TGCA 2 cut(s) 107, 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpySE526I ACGT 1 cut(s) 302
Hsp92I GRCGYC 1 cut(s) 302
Hsp92II CATG 1 cut(s) 111
Kzo9I GATC 3 cut(s) 46, 166, 310
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 8 cut(s) 12, 39, 204, 245, 247, 293, 314, 321
Lsp1109I GCAGC 1 cut(s) 337
MaeI CTAG 4 cut(s) 42, 78, 128, 321
MaeII ACGT 1 cut(s) 302
MaeIII GTNAC 2 cut(s) 13, 298
MalI GATC 3 cut(s) 48, 168, 312
MboI GATC 3 cut(s) 46, 166, 310
MboII GAAGA 1 cut(s) 418
MfeI CAATTG 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 2 cut(s) 219, 274
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 3 cut(s) 149, 365, 373
MseI TTAA 1 cut(s) 317
MspR9I CCNGG 1 cut(s) 27
MunI CAATTG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 134
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 185
NdeII GATC 3 cut(s) 46, 166, 310
NlaIII CATG 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 298
PctI GAATGC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 455
PkrI GCNGC 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 25
PspEI GGTNACC 1 cut(s) 13
PspGI CCWGG 1 cut(s) 25
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
SalI GTCGAC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 3 cut(s) 46, 166, 310
ScaI AGTACT 1 cut(s) 295
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 1 cut(s) 245
SetI ASST 4 cut(s) 196, 234, 305, 333
SpeI ACTAGT 2 cut(s) 127, 320
Sse9I AATT 2 cut(s) 219, 274
SsiI CCGC 2 cut(s) 23, 179
SspMI CTAG 4 cut(s) 42, 78, 128, 321
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 1 cut(s) 367
TaaI ACNGT 4 cut(s) 19, 293, 298, 455
TaiI ACGT 1 cut(s) 305
TaqI TCGA 2 cut(s) 63, 325
TasI AATT 2 cut(s) 219, 274
TatI WGTACW 1 cut(s) 293
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 1 cut(s) 458
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 1 cut(s) 350
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 1 cut(s) 272
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 1 cut(s) 458
Van91I CCANNNNNTGG 1 cut(s) 455
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XmiI GTMKAC 2 cut(s) 215, 325
XspI CTAG 4 cut(s) 42, 78, 128, 321
ZraI GACGTC 1 cut(s) 303
ZrmI AGTACT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.