RLG00000010694

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011581
Physical Location & Seq
Reverse (-)
3684153 .. 3688699
4547 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010694

Sequence Viewer

Length: 480 bp
ATGGATGAATCAACTTTTCATTCAAAGTTCCCATTCCTCTTTCTTTTTTCTTTGGCGCCGGCTACCGTTCTGCCTGACAATTCTTTGCCTGGTGATCTGCTGATGGCGTTAATTGTTGTTTTATATGGTTTTGAGATTTGGGTGATGGAGTCTTCTGGATGGGATCTGGCTTCCCAGCTCTTGATTGCAGCTTCTGTGACGTCTGTGTCATGCAGTGGTTTAGTTTGTGGCCGGATTCCGAGCACCGTTGCCAAGCGAAGGAGAAGCAAGAAGAAGAGGATTGTCGTAATTGCAGTATCCGTCGGCGATGTCGAGGTCGTCGTCTCGGTCAACTCCGTCTGTGATGCCCGGTCTCTGGAAGGACCTTCCGGTCAAGCTCCACCACAAGGTCTACAGATTCTCAATGGCGCCGGTACACCTCGATCTCACTTCGAACACTTTCTCCAGCGAGATTCCGAGGAGCAGCACCAACCTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.26

Weight (kDa)

6.05

Isoelectric Point (pI)

58.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 205, 369
AatII GACGTC 1 cut(s) 203
AccB1I GGYRCC 2 cut(s) 55, 407
AccI GTMKAC 1 cut(s) 391
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 229
AcyI GRCGYC 3 cut(s) 56, 200, 408
AfaI GTAC 1 cut(s) 415
AfiI CCNNNNNNNGG 3 cut(s) 258, 355, 386
AgsI TTSAA 1 cut(s) 24
AjnI CCWGG 1 cut(s) 88
AloI GAACNNNNNNTCC 2 cut(s) 426, 458
AluBI AGCT 3 cut(s) 178, 191, 377
AluI AGCT 3 cut(s) 178, 191, 377
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 2 cut(s) 328, 357
AlwI GGATC 1 cut(s) 171
AlwNI CAGNNNCTG 1 cut(s) 194
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 2 cut(s) 188, 463
Asp700I GAANNNNTTC 1 cut(s) 438
AspLEI GCGC 2 cut(s) 58, 410
AspS9I GGNCC 1 cut(s) 362
AsuC2I CCSGG 1 cut(s) 349
AsuHPI GGTGA 2 cut(s) 104, 154
AsuII TTCGAA 1 cut(s) 432
AvaII GGWCC 1 cut(s) 362
BanI GGYRCC 2 cut(s) 55, 407
BbsI GAAGAC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 2 cut(s) 200, 475
BccI CCATC 3 cut(s) 97, 139, 153
BciT130I CCWGG 1 cut(s) 90
BciVI GTATCC 1 cut(s) 307
BcnI CCSGG 1 cut(s) 349
BcoDI GTCTC 2 cut(s) 328, 357
BfmI CTRYAG 1 cut(s) 392
BfoI RGCGCY 2 cut(s) 59, 411
BfuI GTATCC 1 cut(s) 307
BisI GCNGC 2 cut(s) 189, 464
BlsI GCNGC 2 cut(s) 190, 465
Bme1390I CCNGG 2 cut(s) 90, 349
Bme18I GGWCC 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 2 cut(s) 57, 409
BmrFI CCNGG 2 cut(s) 90, 349
BmsI GCATC 1 cut(s) 334
BpiI GAAGAC 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 428
Bpu14I TTCGAA 1 cut(s) 432
BpuMI CCSGG 1 cut(s) 349
BsaHI GRCGYC 3 cut(s) 56, 200, 408
BsaI GGTCTC 1 cut(s) 357
BsaJI CCNNGG 2 cut(s) 456, 473
BsaWI WCCGGW 1 cut(s) 368
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 3 cut(s) 258, 355, 386
Bse118I RCCGGY 2 cut(s) 58, 410
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 456, 473
BseGI GGATG 2 cut(s) 10, 164
BseLI CCNNNNNNNGG 3 cut(s) 258, 355, 386
BseRI GAGGAG 1 cut(s) 473
BseXI GCAGC 2 cut(s) 200, 475
BseYI CCCAGC 1 cut(s) 174
BshFI GGCC 1 cut(s) 231
BshNI GGYRCC 2 cut(s) 55, 407
BsiHKAI GWGCWC 1 cut(s) 245
BsiSI CCGG 5 cut(s) 59, 232, 349, 369, 411
BslI CCNNNNNNNGG 3 cut(s) 258, 355, 386
BsmAI GTCTC 2 cut(s) 328, 357
BsmBI CGTCTC 1 cut(s) 328
BsnI GGCC 1 cut(s) 231
Bso31I GGTCTC 1 cut(s) 357
Bsp119I TTCGAA 1 cut(s) 432
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 3 cut(s) 94, 163, 422
BspANI GGCC 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 57, 409
BspPI GGATC 1 cut(s) 171
BspT104I TTCGAA 1 cut(s) 432
BspT107I GGYRCC 2 cut(s) 55, 407
BspTNI GGTCTC 1 cut(s) 357
BsrFI RCCGGY 2 cut(s) 58, 410
BssAI RCCGGY 2 cut(s) 58, 410
BssECI CCNNGG 2 cut(s) 456, 473
BssMI GATC 3 cut(s) 94, 163, 422
BssNI GRCGYC 3 cut(s) 56, 200, 408
BssT1I CCWWGG 1 cut(s) 473
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 67, 247
Bst6I CTCTTC 1 cut(s) 269
BstACI GRCGYC 3 cut(s) 56, 200, 408
BstBI TTCGAA 1 cut(s) 432
BstC8I GCNNGC 1 cut(s) 60
BstF5I GGATG 2 cut(s) 10, 164
BstH2I RGCGCY 2 cut(s) 59, 411
BstHHI GCGC 2 cut(s) 58, 410
BstKTI GATC 3 cut(s) 97, 166, 425
BstMAI GTCTC 2 cut(s) 328, 357
BstMBI GATC 3 cut(s) 94, 163, 422
BstNI CCWGG 1 cut(s) 90
BstSCI CCNGG 2 cut(s) 88, 347
BstSFI CTRYAG 1 cut(s) 392
BstV1I GCAGC 2 cut(s) 200, 475
BstV2I GAAGAC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BsuI GTATCC 1 cut(s) 307
BsuRI GGCC 1 cut(s) 231
BtgZI GCGATG 1 cut(s) 321
BtsCI GGATG 2 cut(s) 10, 164
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 60
CaiI CAGNNNCTG 1 cut(s) 194
CfoI GCGC 2 cut(s) 58, 410
Cfr10I RCCGGY 2 cut(s) 58, 410
Cfr13I GGNCC 1 cut(s) 362
Csp6I GTAC 1 cut(s) 414
CviAII CATG 1 cut(s) 210
CviJI RGCY 6 cut(s) 62, 170, 178, 191, 231, 377
CviKI_1 RGCY 6 cut(s) 62, 170, 178, 191, 231, 377
CviQI GTAC 1 cut(s) 414
DinI GGCGCC 2 cut(s) 57, 409
DpnI GATC 3 cut(s) 96, 165, 424
DpnII GATC 3 cut(s) 94, 163, 422
DrdI GACNNNNNNGTC 2 cut(s) 205, 369
DseDI GACNNNNNNGTC 2 cut(s) 205, 369
EaeI YGGCCR 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 473
Eco31I GGTCTC 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 362
EcoO109I RGGNCCY 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 473
EgeI GGCGCC 2 cut(s) 57, 409
EheI GGCGCC 2 cut(s) 57, 409
ErhI CCWWGG 1 cut(s) 473
Esp3I CGTCTC 1 cut(s) 328
FaeI CATG 1 cut(s) 213
FaiI YATR 3 cut(s) 124, 126, 211
FatI CATG 1 cut(s) 209
FblI GTMKAC 1 cut(s) 391
Fnu4HI GCNGC 2 cut(s) 189, 464
FokI GGATG 2 cut(s) 17, 171
Fsp4HI GCNGC 2 cut(s) 189, 464
GlaI GCGC 2 cut(s) 57, 409
GluI GCNGC 2 cut(s) 189, 464
GsaI CCCAGC 1 cut(s) 178
GsuI CTGGAG 1 cut(s) 428
HaeII RGCGCY 2 cut(s) 59, 411
HaeIII GGCC 1 cut(s) 231
HapII CCGG 5 cut(s) 59, 232, 349, 369, 411
HhaI GCGC 2 cut(s) 58, 410
Hin1I GRCGYC 3 cut(s) 56, 200, 408
Hin1II CATG 1 cut(s) 213
Hin6I GCGC 2 cut(s) 56, 408
HinP1I GCGC 2 cut(s) 56, 408
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HinfI GANTC 5 cut(s) 8, 149, 235, 397, 452
HpaII CCGG 5 cut(s) 59, 232, 349, 369, 411
HphI GGTGA 2 cut(s) 104, 154
Hpy166II GTNNAC 3 cut(s) 331, 392, 416
Hpy188I TCNGA 2 cut(s) 240, 457
Hpy188III TCNNGA 3 cut(s) 156, 181, 356
Hpy8I GTNNAC 3 cut(s) 331, 392, 416
Hpy99I CGWCG 2 cut(s) 305, 323
HpyAV CCTTC 3 cut(s) 252, 353, 375
HpyCH4III ACNGT 2 cut(s) 67, 247
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 3 cut(s) 188, 213, 293
HpySE526I ACGT 1 cut(s) 200
Hsp92I GRCGYC 3 cut(s) 56, 200, 408
Hsp92II CATG 1 cut(s) 213
HspAI GCGC 2 cut(s) 56, 408
KasI GGCGCC 2 cut(s) 55, 407
KroI GCCGGC 1 cut(s) 58
KroNI GCCGGC 1 cut(s) 60
Kzo9I GATC 3 cut(s) 94, 163, 422
LmnI GCTCC 2 cut(s) 382, 460
Lsp1109I GCAGC 2 cut(s) 200, 475
LweI GCATC 1 cut(s) 334
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 196
MalI GATC 3 cut(s) 96, 165, 424
MboI GATC 3 cut(s) 94, 163, 422
MboII GAAGA 3 cut(s) 144, 283, 286
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 3 cut(s) 79, 111, 288
Mly113I GGCGCC 2 cut(s) 56, 408
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 5 cut(s) 47, 270, 307, 429, 451
MroNI GCCGGC 1 cut(s) 58
MroXI GAANNNNTTC 1 cut(s) 438
MseI TTAA 1 cut(s) 110
MspI CCGG 5 cut(s) 59, 232, 349, 369, 411
MspR9I CCNGG 2 cut(s) 90, 349
MvaI CCWGG 1 cut(s) 90
NaeI GCCGGC 1 cut(s) 60
NarI GGCGCC 2 cut(s) 56, 408
NciI CCSGG 1 cut(s) 349
NdeII GATC 3 cut(s) 94, 163, 422
NgoMIV GCCGGC 1 cut(s) 58
NlaIII CATG 1 cut(s) 213
NlaIV GGNNCC 2 cut(s) 57, 409
NmuCI GTSAC 1 cut(s) 196
NspV TTCGAA 1 cut(s) 432
PcsI WCGNNNNNNNCGW 2 cut(s) 309, 318
PdiI GCCGGC 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 4 cut(s) 8, 235, 397, 452
PkrI GCNGC 2 cut(s) 190, 465
PleI GAGTC 1 cut(s) 157
PluTI GGCGCC 2 cut(s) 59, 411
PpsI GAGTC 1 cut(s) 157
PpuMI RGGWCCY 1 cut(s) 362
Psp5II RGGWCCY 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 88
PspFI CCCAGC 1 cut(s) 174
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 2 cut(s) 57, 409
PspPI GGNCC 1 cut(s) 362
PspPPI RGGWCCY 1 cut(s) 362
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 2 cut(s) 189, 464
Sau3AI GATC 3 cut(s) 94, 163, 422
Sau96I GGNCC 1 cut(s) 362
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 90, 349
SduI GDGCHC 1 cut(s) 245
SetI ASST 9 cut(s) 180, 193, 203, 318, 367, 379, 391, 421, 475
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 392
SfoI GGCGCC 2 cut(s) 57, 409
SfuI TTCGAA 1 cut(s) 432
SinI GGWCC 1 cut(s) 362
Sse9I AATT 3 cut(s) 79, 111, 288
SspDI GGCGCC 2 cut(s) 55, 407
StyD4I CCNGG 2 cut(s) 88, 347
StyI CCWWGG 1 cut(s) 473
TaaI ACNGT 2 cut(s) 67, 247
TaiI ACGT 1 cut(s) 203
TaqI TCGA 3 cut(s) 312, 421, 432
TaqII GACCGA 1 cut(s) 316
TasI AATT 3 cut(s) 79, 111, 288
TfiI GAWTC 4 cut(s) 8, 235, 397, 452
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 2 cut(s) 188, 463
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 8, 21
TspGWI ACGGA 2 cut(s) 289, 325
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 362
XmiI GTMKAC 1 cut(s) 391
XmnI GAANNNNTTC 1 cut(s) 438
ZraI GACGTC 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.