RLG00000014651

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011581
Physical Location & Seq
Reverse (-)
55785572 .. 55786859
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014651

Sequence Viewer

Length: 444 bp
ATGAAACCTTCCATGAACTCCGTGAATCCAATCCATAGCCTATTATCGTCGCCGGTACATTTCAAAGATCAAGGGGTGGCGCTAGAGAGACTTGGAGACCTTGCGGCTGCACCGGAAGCCGAGCTCGTGGTGGAGCTTGCCGGAGTCGTCGAGGTGGAGGACGCGGTGGAGCTACTTCGAGAGAAGTCTTTGGATATGATTCCGAGCACCGTTGCCAAGCGAAAGAGAAGCAAGAAGAAGAGGATCGTCGTAATTGCAGTATCCGTCGGCGATGTCGAGGTCGTCGTCTCGGTCAACTCCGTCTGTGATGCCCGGTCTCTGGAAGGACCTTCCGGTCAAGCTCCACCACAAGGTCTACAGATTCTTAATGGCGCCGGTACACCTCGATCTCACTTCGAACACTTTCTCCTGCGAGATTCCGAGGAGCAGCGCCAACCTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

15.92

Weight (kDa)

5.81

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 333
AccB1I GGYRCC 1 cut(s) 371
AccI GTMKAC 1 cut(s) 355
AccII CGCG 1 cut(s) 164
AciI CCGC 2 cut(s) 104, 164
AclWI GGATC 1 cut(s) 251
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 2 cut(s) 57, 379
AfiI CCNNNNNNNGG 2 cut(s) 319, 350
AgsI TTSAA 1 cut(s) 64
AloI GAACNNNNNNTCC 2 cut(s) 390, 422
AluBI AGCT 4 cut(s) 124, 136, 172, 341
AluI AGCT 4 cut(s) 124, 136, 172, 341
Alw21I GWGCWC 2 cut(s) 126, 209
Alw26I GTCTC 4 cut(s) 82, 90, 292, 321
AlwI GGATC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 107, 427
Asp700I GAANNNNTTC 1 cut(s) 402
AspLEI GCGC 3 cut(s) 82, 374, 432
AspS9I GGNCC 1 cut(s) 326
AsuC2I CCSGG 1 cut(s) 313
AsuII TTCGAA 1 cut(s) 396
AvaII GGWCC 1 cut(s) 326
BanI GGYRCC 1 cut(s) 371
BanII GRGCYC 1 cut(s) 126
BauI CACGAG 1 cut(s) 125
Bbv12I GWGCWC 2 cut(s) 126, 209
BbvI GCAGC 2 cut(s) 94, 439
BciVI GTATCC 1 cut(s) 271
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 4 cut(s) 82, 90, 292, 321
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 356
BfoI RGCGCY 3 cut(s) 83, 375, 433
BfuI GTATCC 1 cut(s) 271
BisI GCNGC 3 cut(s) 105, 108, 428
BlsI GCNGC 3 cut(s) 106, 109, 429
Bme1390I CCNGG 1 cut(s) 313
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 1 cut(s) 373
BmrFI CCNGG 1 cut(s) 313
BmsI GCATC 1 cut(s) 298
Bpu14I TTCGAA 1 cut(s) 396
BpuMI CCSGG 1 cut(s) 313
BsaHI GRCGYC 1 cut(s) 372
BsaI GGTCTC 2 cut(s) 90, 321
BsaJI CCNNGG 2 cut(s) 420, 437
BsaWI WCCGGW 2 cut(s) 112, 332
BsaXI ACNNNNNCTCC 2 cut(s) 390, 420
Bsc4I CCNNNNNNNGG 2 cut(s) 319, 350
Bse118I RCCGGY 2 cut(s) 52, 374
BseDI CCNNGG 2 cut(s) 420, 437
BseLI CCNNNNNNNGG 2 cut(s) 319, 350
BseRI GAGGAG 1 cut(s) 437
BseXI GCAGC 2 cut(s) 94, 439
BsgI GTGCAG 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 371
BsiHKAI GWGCWC 2 cut(s) 126, 209
BsiSI CCGG 6 cut(s) 53, 113, 141, 313, 333, 375
BslI CCNNNNNNNGG 2 cut(s) 319, 350
BsmAI GTCTC 4 cut(s) 82, 90, 292, 321
BsmBI CGTCTC 1 cut(s) 292
Bso31I GGTCTC 2 cut(s) 90, 321
Bsp119I TTCGAA 1 cut(s) 396
Bsp1286I GDGCHC 2 cut(s) 126, 209
Bsp143I GATC 3 cut(s) 67, 243, 386
BspACI CCGC 2 cut(s) 104, 164
BspFNI CGCG 1 cut(s) 164
BspLI GGNNCC 1 cut(s) 373
BspPI GGATC 1 cut(s) 251
BspT104I TTCGAA 1 cut(s) 396
BspT107I GGYRCC 1 cut(s) 371
BspTNI GGTCTC 2 cut(s) 90, 321
BsrFI RCCGGY 2 cut(s) 52, 374
BssAI RCCGGY 2 cut(s) 52, 374
BssECI CCNNGG 2 cut(s) 420, 437
BssMI GATC 3 cut(s) 67, 243, 386
BssNI GRCGYC 1 cut(s) 372
BssSI CACGAG 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 437
Bst2BI CACGAG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 1 cut(s) 233
BstACI GRCGYC 1 cut(s) 372
BstBI TTCGAA 1 cut(s) 396
BstC8I GCNNGC 1 cut(s) 138
BstFNI CGCG 1 cut(s) 164
BstH2I RGCGCY 3 cut(s) 83, 375, 433
BstHHI GCGC 3 cut(s) 82, 374, 432
BstKTI GATC 3 cut(s) 70, 246, 389
BstMAI GTCTC 4 cut(s) 82, 90, 292, 321
BstMBI GATC 3 cut(s) 67, 243, 386
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 311
BstSFI CTRYAG 1 cut(s) 356
BstUI CGCG 1 cut(s) 164
BstV1I GCAGC 2 cut(s) 94, 439
BsuI GTATCC 1 cut(s) 271
BtgZI GCGATG 1 cut(s) 285
Cac8I GCNNGC 1 cut(s) 138
CfoI GCGC 3 cut(s) 82, 374, 432
Cfr10I RCCGGY 2 cut(s) 52, 374
Cfr13I GGNCC 1 cut(s) 326
CseI GACGC 1 cut(s) 170
Csp6I GTAC 2 cut(s) 56, 378
CviAII CATG 1 cut(s) 13
CviJI RGCY 7 cut(s) 39, 107, 119, 124, 136, 172, 341
CviKI_1 RGCY 7 cut(s) 39, 107, 119, 124, 136, 172, 341
CviQI GTAC 2 cut(s) 56, 378
DinI GGCGCC 1 cut(s) 373
DpnI GATC 3 cut(s) 69, 245, 388
DpnII GATC 3 cut(s) 67, 243, 386
DrdI GACNNNNNNGTC 1 cut(s) 333
DseDI GACNNNNNNGTC 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Ecl136II GAGCTC 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 437
Eco24I GRGCYC 1 cut(s) 126
Eco31I GGTCTC 2 cut(s) 90, 321
Eco47I GGWCC 1 cut(s) 326
Eco53kI GAGCTC 1 cut(s) 124
EcoICRI GAGCTC 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 437
EcoT38I GRGCYC 1 cut(s) 126
EgeI GGCGCC 1 cut(s) 373
EheI GGCGCC 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 437
Esp3I CGTCTC 1 cut(s) 292
FaeI CATG 1 cut(s) 16
FaiI YATR 3 cut(s) 14, 36, 197
FatI CATG 1 cut(s) 12
FblI GTMKAC 1 cut(s) 355
Fnu4HI GCNGC 3 cut(s) 105, 108, 428
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 3 cut(s) 105, 108, 428
FspBI CTAG 1 cut(s) 83
GlaI GCGC 3 cut(s) 81, 373, 431
GluI GCNGC 3 cut(s) 105, 108, 428
HaeII RGCGCY 3 cut(s) 83, 375, 433
HapII CCGG 6 cut(s) 53, 113, 141, 313, 333, 375
HgaI GACGC 1 cut(s) 170
HhaI GCGC 3 cut(s) 82, 374, 432
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 3 cut(s) 80, 372, 430
HinP1I GCGC 3 cut(s) 80, 372, 430
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 5 cut(s) 25, 144, 199, 361, 416
HpaII CCGG 6 cut(s) 53, 113, 141, 313, 333, 375
Hpy166II GTNNAC 3 cut(s) 295, 356, 380
Hpy188I TCNGA 2 cut(s) 204, 421
Hpy188III TCNNGA 2 cut(s) 179, 320
Hpy8I GTNNAC 3 cut(s) 295, 356, 380
Hpy99I CGWCG 5 cut(s) 52, 152, 251, 269, 287
HpyAV CCTTC 3 cut(s) 18, 317, 339
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 110, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 3 cut(s) 80, 372, 430
KasI GGCGCC 1 cut(s) 371
Kzo9I GATC 3 cut(s) 67, 243, 386
LmnI GCTCC 4 cut(s) 133, 169, 346, 424
LpnPI CCDG 8 cut(s) 66, 126, 154, 305, 326, 346, 388, 422
Lsp1109I GCAGC 2 cut(s) 94, 439
LweI GCATC 1 cut(s) 298
MaeI CTAG 1 cut(s) 83
MalI GATC 3 cut(s) 69, 245, 388
MboI GATC 3 cut(s) 67, 243, 386
MboII GAAGA 2 cut(s) 247, 250
MhlI GDGCHC 2 cut(s) 126, 209
MluCI AATT 1 cut(s) 252
Mly113I GGCGCC 1 cut(s) 372
MlyI GAGTC 1 cut(s) 153
MnlI CCTC 6 cut(s) 145, 151, 234, 271, 393, 415
MroXI GAANNNNTTC 1 cut(s) 402
MseI TTAA 1 cut(s) 366
MspI CCGG 6 cut(s) 53, 113, 141, 313, 333, 375
MspR9I CCNGG 1 cut(s) 313
MvnI CGCG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 116
NarI GGCGCC 1 cut(s) 372
NciI CCSGG 1 cut(s) 313
NdeII GATC 3 cut(s) 67, 243, 386
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 1 cut(s) 373
NmeAIII GCCGAG 1 cut(s) 145
NspV TTCGAA 1 cut(s) 396
PcsI WCGNNNNNNNCGW 2 cut(s) 273, 282
PdmI GAANNNNTTC 1 cut(s) 402
PfeI GAWTC 4 cut(s) 25, 199, 361, 416
PkrI GCNGC 3 cut(s) 106, 109, 429
PleI GAGTC 1 cut(s) 152
PluTI GGCGCC 1 cut(s) 375
PpsI GAGTC 1 cut(s) 152
PpuMI RGGWCCY 1 cut(s) 326
Psp124BI GAGCTC 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 326
PspN4I GGNNCC 1 cut(s) 373
PspPI GGNCC 1 cut(s) 326
PspPPI RGGWCCY 1 cut(s) 326
RsaI GTAC 2 cut(s) 57, 379
RsaNI GTAC 2 cut(s) 56, 378
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 3 cut(s) 105, 108, 428
Sau3AI GATC 3 cut(s) 67, 243, 386
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 313
SduI GDGCHC 2 cut(s) 126, 209
SfaNI GCATC 1 cut(s) 298
SfcI CTRYAG 1 cut(s) 356
SfoI GGCGCC 1 cut(s) 373
SfuI TTCGAA 1 cut(s) 396
SinI GGWCC 1 cut(s) 326
Sse9I AATT 1 cut(s) 252
SsiI CCGC 2 cut(s) 104, 164
SspDI GGCGCC 1 cut(s) 371
SspMI CTAG 1 cut(s) 83
SstI GAGCTC 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 311
StyI CCWWGG 1 cut(s) 437
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 5 cut(s) 150, 178, 276, 385, 396
TaqII GACCGA 1 cut(s) 280
TasI AATT 1 cut(s) 252
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 4 cut(s) 25, 199, 361, 416
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TseI GCWGC 2 cut(s) 107, 427
TspDTI ATGAA 2 cut(s) 17, 29
TspGWI ACGGA 3 cut(s) 10, 253, 289
VpaK11BI GGWCC 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 355
XmnI GAANNNNTTC 1 cut(s) 402
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.