Rh7DG461100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011581
Physical Location & Seq
Forward (+)
65500943 .. 65501260
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG461100.1

Sequence Viewer

Length: 318 bp
ATGGATCGCTTTGTGGCGGTGTTAGCACTAGCTATTTCCTTCTCCGTTGGGTTTGCAATTAGGCTGAACCTGTGGTGGTGCTCCGATGTCGGGATGAATTGGGTGTATTCCAATTTTCCGATGGTAAACAATACTGTGACGTCTCTGGGTCACTTAACTAGTCGACAGGTGGCTGGTTATGTTTATGCTGCTGTCGTTTCCTCCCTTGGAGGGTTTGCTACTTGGATGGATAATGGAAAAATTCTTACATACGGCAACCGCACCACGTGGCCGTGCGGCTGCCCAATCAGAACCCACCAAAAATTTCTTTCATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.71

Weight (kDa)

9.3

Isoelectric Point (pI)

9.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 163
AciI CCGC 3 cut(s) 17, 259, 276
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 269
AcsI RAATTY 2 cut(s) 240, 302
AcvI CACGTG 1 cut(s) 267
AcyI GRCGYC 1 cut(s) 140
AdeI CACNNNGTG 1 cut(s) 267
AfiI CCNNNNNNNGG 2 cut(s) 90, 210
AhlI ACTAGT 1 cut(s) 158
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 2 cut(s) 188, 279
ApoI RAATTY 2 cut(s) 240, 302
BbrPI CACGTG 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 2 cut(s) 175, 266
BccI CCATC 2 cut(s) 115, 220
BceAI ACGGC 2 cut(s) 256, 268
BcoDI GTCTC 1 cut(s) 147
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 2 cut(s) 29, 159
BisI GCNGC 3 cut(s) 189, 277, 280
BlsI GCNGC 3 cut(s) 190, 278, 281
BsaAI YACGTR 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 205
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 210
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 2 cut(s) 99, 231
BseLI CCNNNNNNNGG 2 cut(s) 90, 210
BseXI GCAGC 2 cut(s) 175, 266
BshFI GGCC 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 83
BslI CCNNNNNNNGG 2 cut(s) 90, 210
BsmAI GTCTC 1 cut(s) 147
BsmBI CGTCTC 1 cut(s) 147
BsnI GGCC 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 3 cut(s) 17, 259, 276
BspANI GGCC 1 cut(s) 271
BspPI GGATC 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 1 cut(s) 4
BssNI GRCGYC 1 cut(s) 140
BssT1I CCWWGG 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 136
BstACI GRCGYC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 267
BstF5I GGATG 2 cut(s) 99, 231
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstV1I GCAGC 2 cut(s) 175, 266
BsuRI GGCC 1 cut(s) 271
BtsCI GGATG 2 cut(s) 99, 231
CviJI RGCY 5 cut(s) 32, 64, 173, 271, 279
CviKI_1 RGCY 5 cut(s) 32, 64, 173, 271, 279
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DraIII CACNNNGTG 1 cut(s) 267
EaeI YGGCCR 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 205
Eco72I CACGTG 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 205
Esp3I CGTCTC 1 cut(s) 147
FaiI YATR 3 cut(s) 180, 186, 250
FblI GTMKAC 1 cut(s) 163
Fnu4HI GCNGC 3 cut(s) 189, 277, 280
FokI GGATG 2 cut(s) 106, 238
Fsp4HI GCNGC 3 cut(s) 189, 277, 280
FspBI CTAG 2 cut(s) 29, 159
GluI GCNGC 3 cut(s) 189, 277, 280
HaeIII GGCC 1 cut(s) 271
Hin1I GRCGYC 1 cut(s) 140
HincII GTYRAC 1 cut(s) 164
HindII GTYRAC 1 cut(s) 164
Hpy166II GTNNAC 2 cut(s) 127, 164
Hpy188I TCNGA 4 cut(s) 85, 120, 290, 317
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 2 cut(s) 127, 164
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 2 cut(s) 140, 266
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpySE526I ACGT 2 cut(s) 140, 266
Hsp92I GRCGYC 1 cut(s) 140
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 4 cut(s) 83, 131, 152, 159
Lsp1109I GCAGC 2 cut(s) 175, 266
MaeI CTAG 2 cut(s) 29, 159
MaeII ACGT 2 cut(s) 140, 266
MaeIII GTNAC 2 cut(s) 136, 149
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 5 cut(s) 57, 97, 112, 240, 302
MnlI CCTC 2 cut(s) 203, 211
MseI TTAA 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 1 cut(s) 4
NmuCI GTSAC 2 cut(s) 136, 149
PkrI GCNGC 3 cut(s) 190, 278, 281
PmaCI CACGTG 1 cut(s) 267
PmlI CACGTG 1 cut(s) 267
Ppu21I YACGTR 1 cut(s) 267
PspCI CACGTG 1 cut(s) 267
SalI GTCGAC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 3 cut(s) 189, 277, 280
Sau3AI GATC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 83
SetI ASST 5 cut(s) 34, 72, 143, 171, 269
SpeI ACTAGT 1 cut(s) 158
Sse9I AATT 5 cut(s) 57, 97, 112, 240, 302
SsiI CCGC 3 cut(s) 17, 259, 276
SspMI CTAG 2 cut(s) 29, 159
StyI CCWWGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 2 cut(s) 143, 269
TaqI TCGA 1 cut(s) 163
TasI AATT 5 cut(s) 57, 97, 112, 240, 302
TauI GCSGC 1 cut(s) 279
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TseFI GTSAC 2 cut(s) 136, 149
TseI GCWGC 2 cut(s) 188, 279
Tsp45I GTSAC 2 cut(s) 136, 149
TspDTI ATGAA 2 cut(s) 110, 300
TspGWI ACGGA 1 cut(s) 34
XapI RAATTY 2 cut(s) 240, 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 163
XspI CTAG 2 cut(s) 29, 159
ZraI GACGTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.