Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005182

Physical Location & Seq

Genomic Coordinates Forward (+)

1138028 .. 1139252

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0017000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCCTCCAGTCTCTGCATCTCTCTCCTTCAGATGCATCTCTCTCCTTCAGACGCATCTCCTACAGCTCTGTGCTCATCAATTACCCATGGATAGATTGAAGCTTTGGATGCATTTTCTTTCTCAATTTCTGGAGAGAGAGCTCGTAGTGGCGGAGATGGCGACGGACCCAAAACCAAGACGGCTGAGGGGTCACAAGGCCACCGCCACGTGTTGTATCAGTTGCCACCCCTGGCCTCGTTGCCACTGCCGCCGAGTGTTGTTTCTGTTTATATATGTAGGATGGTTGTTTGCTGGTTTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.76

Weight (kDa)

9.44

Isoelectric Point (pI)

57.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005182)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14300 FvH4_3g19610 FvH4_4g30860 FvH4_5g18841
rosa_chinensis	RchiOBHm_Chr1g0357401 RchiOBHm_Chr2g0112171 RchiOBHm_Chr2g0125391 RchiOBHm_Chr5g0054711 RchiOBHm_Chr5g0064471 RchiOBHm_Chr6g0271351 RchiOBHm_Chr7g0191401 RchiOBHm_Chr7g0214711
rosa_laevigata	RLG00000017451 RLG00000022476
rosa_multiflora	Rmu_sc0000331.1_g000014 Rmu_sc0000795.1_g000108 Rmu_sc0004866.1_g000026 Rmu_sc0005111.1_g000002 Rmu_sc0006642.1_g000002 Rmu_sc0006695.1_g000080 Rmu_sc0009740.1_g000002 Rmu_sc0021244.1_g000001 Rmu_sc0042233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019300 Rroxscaffold_2G00085360
rosa_rugosa	Rorug04G0054100 Rorug05G0017000 Rorug06G0337100 Rorug07G0115500
rosa_samantha	Rh6AG133600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	152, 204, 250
AcuI	CTGAAG	2 cut(s)	13, 32
AcvI	CACGTG	1 cut(s)	210
AflIII	ACRYGT	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	3 cut(s)	67, 103, 142
AluI	AGCT	3 cut(s)	67, 103, 142
Alw21I	GWGCWC	2 cut(s)	76, 144
Alw26I	GTCTC	1 cut(s)	16
AlwNI	CAGNNNCTG	1 cut(s)	14
AoxI	GGCC	2 cut(s)	198, 233
AspS9I	GGNCC	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	144
BbrPI	CACGTG	1 cut(s)	210
Bbv12I	GWGCWC	2 cut(s)	76, 144
BbvCI	CCTCAGC	1 cut(s)	185
BccI	CCATC	2 cut(s)	151, 276
BceAI	ACGGC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	16
BfmI	CTRYAG	1 cut(s)	62
BisI	GCNGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	251
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	5 cut(s)	23, 26, 45, 64, 99
BpmI	CTGGAG	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	185
BsaAI	YACGTR	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	87, 230
Bse1I	ACTGG	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	2 cut(s)	87, 230
BseGI	GGATG	2 cut(s)	114, 287
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	200, 235
BsiHKAI	GWGCWC	2 cut(s)	76, 144
BsmAI	GTCTC	1 cut(s)	16
BsnI	GGCC	2 cut(s)	200, 235
Bsp1286I	GDGCHC	2 cut(s)	76, 144
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	3 cut(s)	152, 204, 250
BspANI	GGCC	2 cut(s)	200, 235
BspCNI	CTCAG	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	87, 230
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	232
BstBAI	YACGTR	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	185
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	114, 287
BstMAI	GTCTC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 158, 249
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	62
BsuRI	GGCC	2 cut(s)	200, 235
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	114, 287
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	244
CaiI	CAGNNNCTG	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	166
CseI	GACGC	1 cut(s)	61
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	6 cut(s)	67, 103, 142, 184, 200, 235
CviKI_1	RGCY	6 cut(s)	67, 103, 142, 184, 200, 235
DdeI	CTNAG	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	2 cut(s)	13, 32
Eco72I	CACGTG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	87
EcoT22I	ATGCAT	2 cut(s)	38, 114
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	1 cut(s)	91
FaiI	YATR	5 cut(s)	89, 272, 274, 276, 304
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	250
FokI	GGATG	2 cut(s)	121, 294
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	250
GluI	GCNGC	1 cut(s)	250
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	200, 235
HgaI	GACGC	1 cut(s)	61
Hin1II	CATG	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	101
Hpy188I	TCNGA	2 cut(s)	32, 51
Hpy188III	TCNNGA	1 cut(s)	131
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	37, 56
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	3 cut(s)	17, 36, 112
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 158, 249
HpyF3I	CTNAG	1 cut(s)	185
HpySE526I	ACGT	1 cut(s)	209
Hsp92II	CATG	1 cut(s)	91
LpnPI	CCDG	5 cut(s)	21, 116, 217, 244, 279
LweI	GCATC	5 cut(s)	23, 26, 45, 64, 99
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	191
MhlI	GDGCHC	2 cut(s)	76, 144
MluCI	AATT	2 cut(s)	80, 125
MnlI	CCTC	3 cut(s)	15, 180, 246
Mph1103I	ATGCAT	2 cut(s)	38, 114
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	109, 158, 249
NcoI	CCATGG	1 cut(s)	87
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	168
NmeAIII	GCCGAG	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	191
NsiI	ATGCAT	2 cut(s)	38, 114
PkrI	GCNGC	1 cut(s)	251
PmaCI	CACGTG	1 cut(s)	210
PmlI	CACGTG	1 cut(s)	210
Ppu21I	YACGTR	1 cut(s)	210
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	230
PspCI	CACGTG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	14
SacI	GAGCTC	1 cut(s)	144
SatI	GCNGC	1 cut(s)	250
Sau96I	GGNCC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	2 cut(s)	76, 144
SetI	ASST	4 cut(s)	69, 105, 144, 212
SfaNI	GCATC	5 cut(s)	23, 26, 45, 64, 99
SfcI	CTRYAG	1 cut(s)	62
SinI	GGWCC	1 cut(s)	166
Sse9I	AATT	2 cut(s)	80, 125
SsiI	CCGC	3 cut(s)	152, 204, 250
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	87
TaiI	ACGT	1 cut(s)	212
TasI	AATT	2 cut(s)	80, 125
TauI	GCSGC	1 cut(s)	252
TscAI	CASTG	1 cut(s)	251
TseFI	GTSAC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	191
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	166
Zsp2I	ATGCAT	2 cut(s)	38, 114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.