Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000795.1

Orthogroup ID

OG0005182

Physical Location & Seq

Genomic Coordinates Reverse (-)

476679 .. 477272

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000795.1_g000108.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgagagaattcagacaagaggatgcaggaaatggtattccactagtctttgcacctaatatacaagacagtgaaaaagatggtggacttattgtaaatgatgaagatgtgagagctggtgttgttttacatgatgacggaatgatgattgtggaagatgatattactgatggggacaaggaacctactattccattgctttggaatatgttcgtccatttgcagctgcctcttttggccaagaaaacaacattagctgatgaaacatgcaaaattcaagaaactatggatggctccattaatgctgattctcctccaatattttcaggttttcatgatctagctttgaccatgattttgtactccttgtggttgattagagcctggcacaaaagcatgggttatttgccatttgaagactccaattatccaacaatgccttggttcatttacattttccttggccttggggttactctctgttcaggacatgttgttgcagacactgcaaatggttatgggtttcaaatgatatcttgcaaaggtgcccagattttgattcagaacatgaaacttgaggacaagtttgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm CH IQ

Protein Analysis

197

Amino Acids

22.05

Weight (kDa)

4.46

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005182)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14300 FvH4_3g19610 FvH4_4g30860 FvH4_5g18841
rosa_chinensis	RchiOBHm_Chr1g0357401 RchiOBHm_Chr2g0112171 RchiOBHm_Chr2g0125391 RchiOBHm_Chr5g0054711 RchiOBHm_Chr5g0064471 RchiOBHm_Chr6g0271351 RchiOBHm_Chr7g0191401 RchiOBHm_Chr7g0214711
rosa_laevigata	RLG00000017451 RLG00000022476
rosa_multiflora	Rmu_sc0000331.1_g000014 Rmu_sc0000795.1_g000108 Rmu_sc0004866.1_g000026 Rmu_sc0005111.1_g000002 Rmu_sc0006642.1_g000002 Rmu_sc0006695.1_g000080 Rmu_sc0009740.1_g000002 Rmu_sc0021244.1_g000001 Rmu_sc0042233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019300 Rroxscaffold_2G00085360
rosa_rugosa	Rorug04G0054100 Rorug05G0017000 Rorug06G0337100 Rorug07G0115500
rosa_samantha	Rh6AG133600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	545
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	2 cut(s)	8, 273
AfaI	GTAC	1 cut(s)	362
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	3 cut(s)	278, 416, 527
AhlI	ACTAGT	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	383
AluBI	AGCT	4 cut(s)	116, 226, 257, 344
AluI	AGCT	4 cut(s)	116, 226, 257, 344
AlwNI	CAGNNNCTG	1 cut(s)	506
AoxI	GGCC	2 cut(s)	237, 463
ApeKI	GCWGC	2 cut(s)	223, 226
ApoI	RAATTY	2 cut(s)	8, 273
ArsI	GACNNNNNNTTYG	2 cut(s)	340, 372
AseI	ATTAAT	1 cut(s)	300
Asp700I	GAANNNNTTC	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	550
BalI	TGGCCA	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	545
BbsI	GAAGAC	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	213, 235
BccI	CCATC	3 cut(s)	74, 164, 284
BciT130I	CCWGG	1 cut(s)	385
BcuI	ACTAGT	1 cut(s)	43
BfaI	CTAG	2 cut(s)	44, 341
BisI	GCNGC	2 cut(s)	224, 227
BlsI	GCNGC	2 cut(s)	225, 228
Bme1390I	CCNGG	1 cut(s)	385
BmiI	GGNNCC	3 cut(s)	183, 295, 547
BmrFI	CCNGG	1 cut(s)	385
BmsI	GCATC	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	423
BsaJI	CCNNGG	3 cut(s)	440, 460, 466
Bse3DI	GCAATG	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	385
BseDI	CCNNGG	3 cut(s)	440, 460, 466
BseGI	GGATG	2 cut(s)	28, 295
BseMI	GCAATG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	303
BseSI	GKGCMC	1 cut(s)	550
BseXI	GCAGC	2 cut(s)	213, 235
BshFI	GGCC	2 cut(s)	239, 465
BshNI	GGYRCC	1 cut(s)	545
BslFI	GGGAC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	2 cut(s)	239, 465
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp143I	GATC	1 cut(s)	337
BspANI	GGCC	2 cut(s)	239, 465
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	3 cut(s)	183, 295, 547
BspT107I	GGYRCC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	194
BssECI	CCNNGG	3 cut(s)	440, 460, 466
BssMI	GATC	1 cut(s)	337
BssT1I	CCWWGG	3 cut(s)	440, 460, 466
Bst2UI	CCWGG	1 cut(s)	385
Bst4CI	ACNGT	1 cut(s)	71
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstF5I	GGATG	2 cut(s)	28, 295
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	1 cut(s)	506
BstNI	CCWGG	1 cut(s)	385
BstNSI	RCATGY	2 cut(s)	270, 494
BstSCI	CCNGG	1 cut(s)	383
BstSLI	GKGCMC	1 cut(s)	550
BstV1I	GCAGC	2 cut(s)	213, 235
BstV2I	GAAGAC	1 cut(s)	423
BstXI	CCANNNNNNTGG	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	239, 465
BtsCI	GGATG	2 cut(s)	28, 295
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	2 cut(s)	76, 504
CaiI	CAGNNNCTG	1 cut(s)	506
CciI	TCATGA	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	7 cut(s)	131, 267, 335, 352, 397, 491, 568
CviJI	RGCY	8 cut(s)	116, 226, 239, 257, 294, 344, 383, 465
CviKI_1	RGCY	8 cut(s)	116, 226, 239, 257, 294, 344, 383, 465
CviQI	GTAC	1 cut(s)	361
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	237
Eco130I	CCWWGG	3 cut(s)	440, 460, 466
Eco32I	GATATC	1 cut(s)	534
EcoRI	GAATTC	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	383
EcoRV	GATATC	1 cut(s)	534
EcoT14I	CCWWGG	3 cut(s)	440, 460, 466
ErhI	CCWWGG	3 cut(s)	440, 460, 466
FaeI	CATG	7 cut(s)	134, 270, 338, 355, 400, 494, 571
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	7 cut(s)	130, 266, 334, 351, 396, 490, 567
Fnu4HI	GCNGC	2 cut(s)	224, 227
FokI	GGATG	2 cut(s)	35, 302
Fsp4HI	GCNGC	2 cut(s)	224, 227
FspBI	CTAG	2 cut(s)	44, 341
GluI	GCNGC	2 cut(s)	224, 227
HaeIII	GGCC	2 cut(s)	239, 465
Hin1II	CATG	7 cut(s)	134, 270, 338, 355, 400, 494, 571
HinfI	GANTC	3 cut(s)	308, 419, 559
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	2 cut(s)	14, 564
Hpy188III	TCNNGA	3 cut(s)	278, 335, 486
Hpy8I	GTNNAC	1 cut(s)	86
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4V	TGCA	7 cut(s)	26, 53, 223, 270, 500, 509, 540
HpyF10VI	GCNNNNNNNGC	1 cut(s)	506
Hsp92II	CATG	7 cut(s)	134, 270, 338, 355, 400, 494, 571
Kzo9I	GATC	1 cut(s)	337
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	7 cut(s)	12, 102, 312, 370, 397, 471, 563
Lsp1109I	GCAGC	2 cut(s)	213, 235
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	2 cut(s)	44, 341
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	3 cut(s)	116, 167, 428
MhlI	GDGCHC	1 cut(s)	550
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	3 cut(s)	8, 273, 424
MluNI	TGGCCA	1 cut(s)	239
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	455
MnlI	CCTC	4 cut(s)	13, 240, 324, 571
Mox20I	TGGCCA	1 cut(s)	239
MroXI	GAANNNNTTC	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	239
MseI	TTAA	2 cut(s)	300, 592
Msp20I	TGGCCA	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	226
MspR9I	CCNGG	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	385
MwoI	GCNNNNNNNGC	1 cut(s)	506
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	7 cut(s)	134, 270, 338, 355, 400, 494, 571
NlaIV	GGNNCC	3 cut(s)	183, 295, 547
NspI	RCATGY	2 cut(s)	270, 494
PagI	TCATGA	1 cut(s)	334
PciI	ACATGT	1 cut(s)	490
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	308, 559
PkrI	GCNGC	2 cut(s)	225, 228
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PscI	ACATGT	1 cut(s)	490
PshBI	ATTAAT	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	383
PspN4I	GGNNCC	3 cut(s)	183, 295, 547
PstNI	CAGNNNCTG	1 cut(s)	506
PvuII	CAGCTG	1 cut(s)	226
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SaqAI	TTAA	2 cut(s)	300, 592
SatI	GCNGC	2 cut(s)	224, 227
Sau3AI	GATC	1 cut(s)	337
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	385
SduI	GDGCHC	1 cut(s)	550
SetI	ASST	8 cut(s)	58, 118, 187, 228, 259, 331, 346, 547
SfaNI	GCATC	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
SpeI	ACTAGT	1 cut(s)	43
Sse9I	AATT	3 cut(s)	8, 273, 424
SspI	AATATT	1 cut(s)	321
SspMI	CTAG	2 cut(s)	44, 341
StyD4I	CCNGG	1 cut(s)	383
StyI	CCWWGG	3 cut(s)	440, 460, 466
TaaI	ACNGT	1 cut(s)	71
TasI	AATT	3 cut(s)	8, 273, 424
TatI	WGTACW	1 cut(s)	360
TfiI	GAWTC	2 cut(s)	308, 559
Tru1I	TTAA	2 cut(s)	300, 592
Tru9I	TTAA	2 cut(s)	300, 592
TscAI	CASTG	2 cut(s)	76, 511
TseI	GCWGC	2 cut(s)	223, 226
TspDTI	ATGAA	5 cut(s)	117, 276, 323, 436, 584
TspGWI	ACGGA	1 cut(s)	153
TspRI	CASTG	2 cut(s)	76, 511
VspI	ATTAAT	1 cut(s)	300
XapI	RAATTY	2 cut(s)	8, 273
XceI	RCATGY	2 cut(s)	270, 494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	438
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	2 cut(s)	44, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.