Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005182

Physical Location & Seq

Genomic Coordinates Reverse (-)

39008605 .. 39010478

Gene Structure 1874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49750

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGAGCATGGGTACCGGGATGTGAATGTGCCTGGAATTGGATCACCGAGATGGTTGAGCTCCGTGGGGGAGTTGCCACCACGAGAGATGAGGGCACTGCGGGGTTGTCGACCACGAAGAGAGAATTTGAGATTCAGAGAGTACGAGTACCCAGTGAAGATTTGGGTGTCTAGATCGATTTTGGGTGACCTTGGCTCTGGCGTGGGCTCCCTCCAAGCATCATCGGTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

77

Amino Acids

8.72

Weight (kDa)

9.99

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005182)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14300 FvH4_3g19610 FvH4_4g30860 FvH4_5g18841
rosa_chinensis	RchiOBHm_Chr1g0357401 RchiOBHm_Chr2g0112171 RchiOBHm_Chr2g0125391 RchiOBHm_Chr5g0054711 RchiOBHm_Chr5g0064471 RchiOBHm_Chr6g0271351 RchiOBHm_Chr7g0191401 RchiOBHm_Chr7g0214711
rosa_laevigata	RLG00000017451 RLG00000022476
rosa_multiflora	Rmu_sc0000331.1_g000014 Rmu_sc0000795.1_g000108 Rmu_sc0004866.1_g000026 Rmu_sc0005111.1_g000002 Rmu_sc0006642.1_g000002 Rmu_sc0006695.1_g000080 Rmu_sc0009740.1_g000002 Rmu_sc0021244.1_g000001 Rmu_sc0042233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019300 Rroxscaffold_2G00085360
rosa_rugosa	Rorug04G0054100 Rorug05G0017000 Rorug06G0337100 Rorug07G0115500
rosa_samantha	Rh6AG133600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	12
AccI	GTMKAC	1 cut(s)	109
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	124
AfaI	GTAC	3 cut(s)	14, 143, 149
AfiI	CCNNNNNNNGG	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	1 cut(s)	60
AluI	AGCT	1 cut(s)	60
Alw21I	GWGCWC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	49
ApoI	RAATTY	1 cut(s)	124
Asp718I	GGTACC	1 cut(s)	12
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	2 cut(s)	36, 197
BaeGI	GKGCMC	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	12
BanII	GRGCYC	2 cut(s)	62, 209
BauI	CACGAG	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	62
BccI	CCATC	1 cut(s)	45
BciT130I	CCWGG	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	17
BfaI	CTAG	1 cut(s)	171
Bme1390I	CCNGG	2 cut(s)	17, 33
BmiI	GGNNCC	2 cut(s)	14, 208
BmrFI	CCNGG	2 cut(s)	17, 33
BmrI	ACTGGG	1 cut(s)	146
BmsI	GCATC	1 cut(s)	227
BmuI	ACTGGG	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	17
Bsa29I	ATCGAT	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	63, 190
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	33
BseCI	ATCGAT	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	63, 190
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	97
BshNI	GGYRCC	1 cut(s)	12
BshVI	ATCGAT	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	16
BslI	CCNNNNNNNGG	1 cut(s)	38
Bsp1286I	GDGCHC	3 cut(s)	62, 97, 209
Bsp143I	GATC	2 cut(s)	41, 173
BspACI	CCGC	1 cut(s)	100
BspDI	ATCGAT	1 cut(s)	176
BspLI	GGNNCC	2 cut(s)	14, 208
BspPI	GGATC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	2 cut(s)	63, 190
BssMI	GATC	2 cut(s)	41, 173
BssSI	CACGAG	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	190
Bst2BI	CACGAG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	33
Bst6I	CTCTTC	1 cut(s)	112
BstDSI	CCRYGG	1 cut(s)	63
BstEII	GGTNACC	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	44, 176
BstMBI	GATC	2 cut(s)	41, 173
BstNI	CCWGG	1 cut(s)	33
BstPI	GGTNACC	1 cut(s)	185
BstSCI	CCNGG	2 cut(s)	15, 31
BstSLI	GKGCMC	1 cut(s)	97
Bsu15I	ATCGAT	1 cut(s)	176
BsuTUI	ATCGAT	1 cut(s)	176
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	25
BtsI	GCAGTG	1 cut(s)	95
BtsIMutI	CAGTG	2 cut(s)	95, 159
ClaI	ATCGAT	1 cut(s)	176
Csp6I	GTAC	3 cut(s)	13, 142, 148
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	3 cut(s)	60, 195, 207
CviKI_1	RGCY	3 cut(s)	60, 195, 207
CviQI	GTAC	3 cut(s)	13, 142, 148
DpnI	GATC	2 cut(s)	43, 175
DpnII	GATC	2 cut(s)	41, 173
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	190
Eco24I	GRGCYC	2 cut(s)	62, 209
Eco53kI	GAGCTC	1 cut(s)	60
Eco91I	GGTNACC	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	60
EcoO65I	GGTNACC	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	190
EcoT38I	GRGCYC	2 cut(s)	62, 209
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	1 cut(s)	11
FaiI	YATR	1 cut(s)	9
FatI	CATG	1 cut(s)	7
FauI	CCCGC	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	109
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	2 cut(s)	62, 209
FspBI	CTAG	1 cut(s)	171
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	110
HindII	GTYRAC	1 cut(s)	110
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	2 cut(s)	36, 197
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	1 cut(s)	137
Hpy188III	TCNNGA	1 cut(s)	171
Hpy8I	GTNNAC	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	11
KpnI	GGTACC	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	41, 173
LmnI	GCTCC	3 cut(s)	4, 65, 212
LpnPI	CCDG	5 cut(s)	18, 29, 45, 165, 183
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	2 cut(s)	43, 175
MboI	GATC	2 cut(s)	41, 173
MboII	GAAGA	2 cut(s)	129, 169
MhlI	GDGCHC	3 cut(s)	62, 97, 209
MluCI	AATT	2 cut(s)	36, 124
MnlI	CCTC	2 cut(s)	84, 221
MslI	CAYNNNNRTG	1 cut(s)	49
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	2 cut(s)	17, 33
MvaI	CCWGG	1 cut(s)	33
NciI	CCSGG	1 cut(s)	17
NdeII	GATC	2 cut(s)	41, 173
NlaIII	CATG	1 cut(s)	11
NlaIV	GGNNCC	2 cut(s)	14, 208
NmuCI	GTSAC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	132
Psp124BI	GAGCTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	31
PspEI	GGTNACC	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	14, 208
RsaI	GTAC	3 cut(s)	14, 143, 149
RsaNI	GTAC	3 cut(s)	13, 142, 148
RseI	CAYNNNNRTG	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	62
SalI	GTCGAC	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	41, 173
ScrFI	CCNGG	2 cut(s)	17, 33
SduI	GDGCHC	3 cut(s)	62, 97, 209
SetI	ASST	2 cut(s)	62, 192
SfaNI	GCATC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	49
Sse9I	AATT	2 cut(s)	36, 124
SsiI	CCGC	1 cut(s)	100
SspMI	CTAG	1 cut(s)	171
SstI	GAGCTC	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	15, 31
StyI	CCWWGG	1 cut(s)	190
TaqI	TCGA	2 cut(s)	109, 176
TasI	AATT	2 cut(s)	36, 124
TfiI	GAWTC	1 cut(s)	132
TscAI	CASTG	2 cut(s)	102, 159
TseFI	GTSAC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	2 cut(s)	102, 159
XapI	RAATTY	1 cut(s)	124
XbaI	TCTAGA	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XmiI	GTMKAC	1 cut(s)	109
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.