Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005182

Physical Location & Seq

Genomic Coordinates Reverse (-)

12694089 .. 12694819

Gene Structure 731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAATCTCCCATTTTCCCTCTTCTTGGGGGTTGTTTATCTGTTTTTCGGCTGTTTTATTTTCCCCACCGTTTTAGGCAGTGTTTCTCGGAGCTTGGCTCTGTTTCTAGCCTTGTGGGTTTTGATCGTTCCGGAGCATCCGGTTTTTGGTTCTTTCTACTTTCATCGGCTTTTCCATTATGGGTTATCCTCTGCCATGGTTGGCGGTCCTCTTTGGTCGGATTCTTTTGAATCTAATCAGTCCCGACCGGTTCCTCTCTTCTTCGGAGGAGATCGAACAGTTGATTATCTGTCTCGTACAGATACCCATCTAAGTGAGATTTCACCCACTCCCCTCTCCCGTCCGATTCATTCGGGTTGCGGGAACCTTGGTTCTTCGTTCATGGCAGATCAGATTAATTCCCTACTTCGTGCTCGAGGTGGTGCTATGGTCTTCTCCCTCCTGTCAGATGTTGCAGTTGTGTGGTTTTACTTTGTTGTGTGTTTGTTTGAGGCTTTTGAGCCATGTATCTCAGGAGGTCTTTTGGACCTCTGTGTATATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

20.03

Weight (kDa)

5.61

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005182)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14300 FvH4_3g19610 FvH4_4g30860 FvH4_5g18841
rosa_chinensis	RchiOBHm_Chr1g0357401 RchiOBHm_Chr2g0112171 RchiOBHm_Chr2g0125391 RchiOBHm_Chr5g0054711 RchiOBHm_Chr5g0064471 RchiOBHm_Chr6g0271351 RchiOBHm_Chr7g0191401 RchiOBHm_Chr7g0214711
rosa_laevigata	RLG00000017451 RLG00000022476
rosa_multiflora	Rmu_sc0000331.1_g000014 Rmu_sc0000795.1_g000108 Rmu_sc0004866.1_g000026 Rmu_sc0005111.1_g000002 Rmu_sc0006642.1_g000002 Rmu_sc0006695.1_g000080 Rmu_sc0009740.1_g000002 Rmu_sc0021244.1_g000001 Rmu_sc0042233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019300 Rroxscaffold_2G00085360
rosa_rugosa	Rorug04G0054100 Rorug05G0017000 Rorug06G0337100 Rorug07G0115500
rosa_samantha	Rh6AG133600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	130
AciI	CCGC	2 cut(s)	204, 360
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	2 cut(s)	25, 146
AgeI	ACCGGT	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	230
AloI	GAACNNNNNNTCC	2 cut(s)	355, 387
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	414
Aor13HI	TCCGGA	1 cut(s)	130
AseI	ATTAAT	1 cut(s)	396
AsiGI	ACCGGT	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	206, 526
AsuHPI	GGTGA	1 cut(s)	315
AvaI	CYCGRG	1 cut(s)	414
AvaII	GGWCC	2 cut(s)	206, 526
BbsI	GAAGAC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	415
BccI	CCATC	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	1 cut(s)	107
Bme18I	GGWCC	2 cut(s)	206, 526
BmeT110I	CYCGRG	1 cut(s)	414
BmgT120I	GGNCC	2 cut(s)	206, 526
BmiI	GGNNCC	2 cut(s)	252, 365
BmsI	GCATC	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	424
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BsaBI	GATNNNNATC	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	195, 367
BsaWI	WCCGGW	3 cut(s)	130, 139, 247
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 146
Bse118I	RCCGGY	1 cut(s)	247
Bse8I	GATNNNNATC	1 cut(s)	306
BseAI	TCCGGA	1 cut(s)	130
BseDI	CCNNGG	2 cut(s)	195, 367
BseGI	GGATG	1 cut(s)	136
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	2 cut(s)	25, 146
BseMII	CTCAG	1 cut(s)	525
BseRI	GAGGAG	1 cut(s)	282
Bsh1285I	CGRYCG	1 cut(s)	248
BshTI	ACCGGT	1 cut(s)	247
BsiEI	CGRYCG	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	415
BsiHKCI	CYCGRG	1 cut(s)	414
BsiSI	CCGG	3 cut(s)	131, 140, 248
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	2 cut(s)	25, 146
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	226
BsoBI	CYCGRG	1 cut(s)	414
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp13I	TCCGGA	1 cut(s)	130
Bsp143I	GATC	3 cut(s)	123, 271, 388
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	2 cut(s)	204, 360
BspCNI	CTCAG	1 cut(s)	524
BspEI	TCCGGA	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	252, 365
BsrFI	RCCGGY	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	2 cut(s)	195, 367
BssMI	GATC	3 cut(s)	123, 271, 388
BssT1I	CCWWGG	2 cut(s)	195, 367
Bst4CI	ACNGT	2 cut(s)	70, 280
Bst6I	CTCTTC	2 cut(s)	26, 263
BstDEI	CTNAG	2 cut(s)	311, 511
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	136
BstKTI	GATC	3 cut(s)	126, 274, 391
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	3 cut(s)	123, 271, 388
BstMCI	CGRYCG	1 cut(s)	248
BstV2I	GAAGAC	1 cut(s)	424
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	136
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	206, 526
Csp6I	GTAC	1 cut(s)	297
CspAI	ACCGGT	1 cut(s)	247
CviAII	CATG	3 cut(s)	196, 382, 504
CviJI	RGCY	7 cut(s)	51, 93, 98, 110, 169, 494, 502
CviKI_1	RGCY	7 cut(s)	51, 93, 98, 110, 169, 494, 502
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	2 cut(s)	311, 511
DpnI	GATC	3 cut(s)	125, 273, 390
DpnII	GATC	3 cut(s)	123, 271, 388
Eam1104I	CTCTTC	2 cut(s)	26, 263
EarI	CTCTTC	2 cut(s)	26, 263
Eco130I	CCWWGG	2 cut(s)	195, 367
Eco47I	GGWCC	2 cut(s)	206, 526
Eco88I	CYCGRG	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	195, 367
ErhI	CCWWGG	2 cut(s)	195, 367
FaeI	CATG	3 cut(s)	199, 385, 507
FaiI	YATR	6 cut(s)	180, 197, 383, 428, 505, 538
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	3 cut(s)	195, 381, 503
FauI	CCCGC	1 cut(s)	353
FokI	GGATG	1 cut(s)	123
FspBI	CTAG	1 cut(s)	107
HapII	CCGG	3 cut(s)	131, 140, 248
Hin1II	CATG	3 cut(s)	199, 385, 507
HinfI	GANTC	4 cut(s)	4, 221, 230, 346
HpaII	CCGG	3 cut(s)	131, 140, 248
HphI	GGTGA	1 cut(s)	315
Hpy188I	TCNGA	6 cut(s)	90, 220, 266, 345, 393, 448
Hpy188III	TCNNGA	3 cut(s)	131, 243, 513
HpyCH4III	ACNGT	2 cut(s)	70, 280
HpyCH4V	TGCA	1 cut(s)	455
HpyF3I	CTNAG	2 cut(s)	311, 511
Hsp92II	CATG	3 cut(s)	199, 385, 507
Kpn2I	TCCGGA	1 cut(s)	130
Kzo9I	GATC	3 cut(s)	123, 271, 388
LmnI	GCTCC	2 cut(s)	90, 133
LpnPI	CCDG	5 cut(s)	144, 153, 261, 455, 498
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	107
MalI	GATC	3 cut(s)	125, 273, 390
MboI	GATC	3 cut(s)	123, 271, 388
MboII	GAAGA	5 cut(s)	13, 250, 253, 366, 424
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	1 cut(s)	397
MmeI	TCCRAC	1 cut(s)	198
MroI	TCCGGA	1 cut(s)	130
MseI	TTAA	2 cut(s)	396, 544
MslI	CAYNNNNRTG	1 cut(s)	312
MspI	CCGG	3 cut(s)	131, 140, 248
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	3 cut(s)	123, 271, 388
NlaIII	CATG	3 cut(s)	199, 385, 507
NlaIV	GGNNCC	2 cut(s)	252, 365
PaeR7I	CTCGAG	1 cut(s)	414
PfeI	GAWTC	4 cut(s)	4, 221, 230, 346
PinAI	ACCGGT	1 cut(s)	247
PshBI	ATTAAT	1 cut(s)	396
PspN4I	GGNNCC	2 cut(s)	252, 365
PspPI	GGNCC	2 cut(s)	206, 526
PspXI	VCTCGAGB	1 cut(s)	414
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	2 cut(s)	396, 544
Sau3AI	GATC	3 cut(s)	123, 271, 388
Sau96I	GGNCC	2 cut(s)	206, 526
SduI	GDGCHC	1 cut(s)	415
SetI	ASST	5 cut(s)	95, 369, 421, 520, 531
SfaNI	GCATC	1 cut(s)	145
Sfr274I	CTCGAG	1 cut(s)	414
SinI	GGWCC	2 cut(s)	206, 526
SlaI	CTCGAG	1 cut(s)	414
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	414
SmoI	CTYRAG	1 cut(s)	414
Sse9I	AATT	1 cut(s)	397
SsiI	CCGC	2 cut(s)	204, 360
SspMI	CTAG	1 cut(s)	107
StyI	CCWWGG	2 cut(s)	195, 367
TaaI	ACNGT	2 cut(s)	70, 280
TaqI	TCGA	2 cut(s)	274, 415
TasI	AATT	1 cut(s)	397
TfiI	GAWTC	4 cut(s)	4, 221, 230, 346
Tru1I	TTAA	2 cut(s)	396, 544
Tru9I	TTAA	2 cut(s)	396, 544
TscAI	CASTG	1 cut(s)	85
TspDTI	ATGAA	4 cut(s)	17, 152, 338, 370
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	2 cut(s)	206, 526
VspI	ATTAAT	1 cut(s)	396
XhoI	CTCGAG	1 cut(s)	414
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.