Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005182

Physical Location & Seq

Genomic Coordinates Reverse (-)

30275850 .. 30276359

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTTTTTCGACTGTCCTTTCTTTACTCTCCCCGCAGTTTCGGGCGGCGCCTCTCGGAGCTTGTCTCCGTCTTGGGCCTTGTTGGTTTTGATGGTTCCGGCGCATCGATTCTCCGTTTATTACTACTTTCATCACCTCTTCCTTGATGGGTTCTCTTCTGCCATGATCGATGATCCTCCTCGGTCGGATTCTTTTGAATATGATCGGCTGATGCTTCAAGAAGCTGTGTACCTCCTGGTGCCTGTTTCTTTCCTTCACGGGATTTCACCTATCCTCTTCGCCATGGTCGCGATGTTATGGATTCTCTGTTCTTGGCAGGTTTGGTCTATTATGGTCAAGGTGATGGTTGTTTTAATTTCTGGGAATTTGGTGGTTGGAACTTTGGAACTTGCATGGGTCTCTCTTCTACGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.69

Weight (kDa)

5.66

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005182)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14300 FvH4_3g19610 FvH4_4g30860 FvH4_5g18841
rosa_chinensis	RchiOBHm_Chr1g0357401 RchiOBHm_Chr2g0112171 RchiOBHm_Chr2g0125391 RchiOBHm_Chr5g0054711 RchiOBHm_Chr5g0064471 RchiOBHm_Chr6g0271351 RchiOBHm_Chr7g0191401 RchiOBHm_Chr7g0214711
rosa_laevigata	RLG00000017451 RLG00000022476
rosa_multiflora	Rmu_sc0000331.1_g000014 Rmu_sc0000795.1_g000108 Rmu_sc0004866.1_g000026 Rmu_sc0005111.1_g000002 Rmu_sc0006642.1_g000002 Rmu_sc0006695.1_g000080 Rmu_sc0009740.1_g000002 Rmu_sc0021244.1_g000001 Rmu_sc0042233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019300 Rroxscaffold_2G00085360
rosa_rugosa	Rorug04G0054100 Rorug05G0017000 Rorug06G0337100 Rorug07G0115500
rosa_samantha	Rh6AG133600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	307
AccB1I	GGYRCC	2 cut(s)	47, 238
AccII	CGCG	1 cut(s)	290
AciI	CCGC	2 cut(s)	33, 45
AclWI	GGATC	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	364
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	197, 218
AjnI	CCWGG	1 cut(s)	234
AloI	GAACNNNNNNTCC	2 cut(s)	292, 324
AluBI	AGCT	2 cut(s)	60, 224
AluI	AGCT	2 cut(s)	60, 224
Alw26I	GTCTC	2 cut(s)	69, 403
AlwI	GGATC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	364
AspLEI	GCGC	2 cut(s)	50, 103
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	3 cut(s)	125, 258, 352
BanI	GGYRCC	2 cut(s)	47, 238
BccI	CCATC	3 cut(s)	85, 140, 337
BciT130I	CCWGG	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	69, 403
BfoI	RGCGCY	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	307
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	3 cut(s)	49, 96, 240
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	2 cut(s)	112, 201
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
Bsa29I	ATCGAT	2 cut(s)	106, 168
BsaHI	GRCGYC	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	403
BsaJI	CCNNGG	2 cut(s)	179, 282
BseBI	CCWGG	1 cut(s)	236
BseCI	ATCGAT	2 cut(s)	106, 168
BseDI	CCNNGG	2 cut(s)	179, 282
BseRI	GAGGAG	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	290
Bsh1285I	CGRYCG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	2 cut(s)	47, 238
BshVI	ATCGAT	2 cut(s)	106, 168
BsiEI	CGRYCG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	98
BsmAI	GTCTC	2 cut(s)	69, 403
BsnI	GGCC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	403
Bsp143I	GATC	3 cut(s)	165, 172, 202
Bsp19I	CCATGG	1 cut(s)	282
Bsp68I	TCGCGA	1 cut(s)	290
BspACI	CCGC	2 cut(s)	33, 45
BspANI	GGCC	1 cut(s)	77
BspDI	ATCGAT	2 cut(s)	106, 168
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	3 cut(s)	49, 96, 240
BspMI	ACCTGC	1 cut(s)	307
BspPI	GGATC	1 cut(s)	167
BspT107I	GGYRCC	2 cut(s)	47, 238
BspTNI	GGTCTC	1 cut(s)	403
BssECI	CCNNGG	2 cut(s)	179, 282
BssMI	GATC	3 cut(s)	165, 172, 202
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	14
Bst6I	CTCTTC	4 cut(s)	143, 160, 281, 408
BstACI	GRCGYC	1 cut(s)	48
BstDSI	CCRYGG	1 cut(s)	282
BstFNI	CGCG	1 cut(s)	290
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	2 cut(s)	50, 103
BstKTI	GATC	3 cut(s)	168, 175, 205
BstMAI	GTCTC	2 cut(s)	69, 403
BstMBI	GATC	3 cut(s)	165, 172, 202
BstMCI	CGRYCG	1 cut(s)	185
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	234
BstUI	CGCG	1 cut(s)	290
Bsu15I	ATCGAT	2 cut(s)	106, 168
BsuRI	GGCC	1 cut(s)	77
BsuTUI	ATCGAT	2 cut(s)	106, 168
BtgI	CCRYGG	1 cut(s)	282
BtgZI	GCGATG	1 cut(s)	305
BtuMI	TCGCGA	1 cut(s)	290
BveI	ACCTGC	1 cut(s)	307
CfoI	GCGC	2 cut(s)	50, 103
Cfr13I	GGNCC	1 cut(s)	75
ClaI	ATCGAT	2 cut(s)	106, 168
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	3 cut(s)	163, 283, 393
CviJI	RGCY	4 cut(s)	60, 77, 208, 224
CviKI_1	RGCY	4 cut(s)	60, 77, 208, 224
CviQI	GTAC	1 cut(s)	229
DinI	GGCGCC	1 cut(s)	49
DpnI	GATC	3 cut(s)	167, 174, 204
DpnII	GATC	3 cut(s)	165, 172, 202
Eam1104I	CTCTTC	4 cut(s)	143, 160, 281, 408
EarI	CTCTTC	4 cut(s)	143, 160, 281, 408
Eco130I	CCWWGG	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	282
EgeI	GGCGCC	1 cut(s)	49
EheI	GGCGCC	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	3 cut(s)	166, 286, 396
FaiI	YATR	6 cut(s)	164, 201, 284, 298, 332, 394
FatI	CATG	3 cut(s)	162, 282, 392
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	46
GlaI	GCGC	2 cut(s)	49, 102
GluI	GCNGC	1 cut(s)	46
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	2 cut(s)	50, 103
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	3 cut(s)	166, 286, 396
Hin6I	GCGC	2 cut(s)	48, 101
HinP1I	GCGC	2 cut(s)	48, 101
HinfI	GANTC	3 cut(s)	108, 188, 301
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	3 cut(s)	125, 258, 352
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	57, 187
Hpy188III	TCNNGA	2 cut(s)	218, 289
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	3 cut(s)	166, 286, 396
HspAI	GCGC	2 cut(s)	48, 101
KasI	GGCGCC	1 cut(s)	47
Kzo9I	GATC	3 cut(s)	165, 172, 202
LmnI	GCTCC	1 cut(s)	57
LpnPI	CCDG	6 cut(s)	111, 221, 248, 255, 302, 345
LweI	GCATC	2 cut(s)	112, 201
MalI	GATC	3 cut(s)	167, 174, 204
MboI	GATC	3 cut(s)	165, 172, 202
MboII	GAAGA	4 cut(s)	130, 147, 268, 395
MluCI	AATT	2 cut(s)	354, 364
Mly113I	GGCGCC	1 cut(s)	48
MmeI	TCCRAC	2 cut(s)	165, 355
MnlI	CCTC	6 cut(s)	61, 146, 186, 189, 242, 284
MseI	TTAA	1 cut(s)	353
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	287
NarI	GGCGCC	1 cut(s)	48
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	3 cut(s)	165, 172, 202
NlaIII	CATG	3 cut(s)	166, 286, 396
NlaIV	GGNNCC	3 cut(s)	49, 96, 240
NruI	TCGCGA	1 cut(s)	290
PfeI	GAWTC	3 cut(s)	108, 188, 301
PkrI	GCNGC	1 cut(s)	47
PluTI	GGCGCC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	3 cut(s)	49, 96, 240
PspPI	GGNCC	1 cut(s)	75
RruI	TCGCGA	1 cut(s)	290
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	1 cut(s)	46
Sau3AI	GATC	3 cut(s)	165, 172, 202
Sau96I	GGNCC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	236
SetI	ASST	7 cut(s)	62, 138, 226, 234, 271, 321, 342
SfaNI	GCATC	2 cut(s)	112, 201
SfoI	GGCGCC	1 cut(s)	49
Sse9I	AATT	2 cut(s)	354, 364
SsiI	CCGC	2 cut(s)	33, 45
SspDI	GGCGCC	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	14
TaqI	TCGA	3 cut(s)	9, 106, 168
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	2 cut(s)	354, 364
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	3 cut(s)	108, 188, 301
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TspDTI	ATGAA	1 cut(s)	119
TspGWI	ACGGA	2 cut(s)	57, 103
XapI	RAATTY	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.