Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000331.1

Orthogroup ID

OG0005182

Physical Location & Seq

Genomic Coordinates Reverse (-)

80335 .. 82685

Gene Structure 2351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000331.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atggctgtccaccagagcaaccttgttgcatctccaaataaagaagctgcttcagattggacttgggtgagtgatgtcgggatgccgctgctggcaagaggagctactgagatggagcatgggtaccgggatgtgaatatgccgggaattgggtcaccgagatggttgagctccgtgagggagtcgccgccaagagagacaagggcactgcggggttgccgaccatggaaagagtatttgagatttagagagcacgagtacccagtgaagatctgggtgtccagatcgattttgggtgaccttagctctggcgtgggctccctccaagcatcatcggtgataatttctattggaactgtgtttcggcgcgtgacctcaccttcgacatcgtcggacatcgcggaggctaaggtggactcgccggagtcctatgagcgcggtggtagtggagctagaactttgaaagaattcagacaagaggatgtaggaaatggtattccactagtcttcgcacctagtatacaagacaatgaagaagatggtgaacttattgtaaatgatgaagatgtgagagctggtgttgttttacgtgatgatggaatgatgattgtggaagatgatattactgatggggacaaggaacctaccattccattgctttggaatatgtttgttcatttgcagctgcctcttttggtcaagaaaccaacattagctgatgacacatgcaaaattcaagaaactatggatggctccattaatgctgattctcctccaatattttcaggctttcatgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm CH IQ

Protein Analysis

266

Amino Acids

29.35

Weight (kDa)

4.77

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005182)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14300 FvH4_3g19610 FvH4_4g30860 FvH4_5g18841
rosa_chinensis	RchiOBHm_Chr1g0357401 RchiOBHm_Chr2g0112171 RchiOBHm_Chr2g0125391 RchiOBHm_Chr5g0054711 RchiOBHm_Chr5g0064471 RchiOBHm_Chr6g0271351 RchiOBHm_Chr7g0191401 RchiOBHm_Chr7g0214711
rosa_laevigata	RLG00000017451 RLG00000022476
rosa_multiflora	Rmu_sc0000331.1_g000014 Rmu_sc0000795.1_g000108 Rmu_sc0004866.1_g000026 Rmu_sc0005111.1_g000002 Rmu_sc0006642.1_g000002 Rmu_sc0006695.1_g000080 Rmu_sc0009740.1_g000002 Rmu_sc0021244.1_g000001 Rmu_sc0042233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019300 Rroxscaffold_2G00085360
rosa_rugosa	Rorug04G0054100 Rorug05G0017000 Rorug06G0337100 Rorug07G0115500
rosa_samantha	Rh6AG133600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	520
AccII	CGCG	3 cut(s)	369, 401, 438
AciI	CCGC	5 cut(s)	86, 188, 211, 401, 438
AcsI	RAATTY	2 cut(s)	467, 732
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	2 cut(s)	125, 260
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	2 cut(s)	463, 737
AhlI	ACTAGT	1 cut(s)	502
AluBI	AGCT	8 cut(s)	47, 104, 171, 306, 452, 575, 685, 716
AluI	AGCT	8 cut(s)	47, 104, 171, 306, 452, 575, 685, 716
Alw21I	GWGCWC	2 cut(s)	173, 255
Alw26I	GTCTC	1 cut(s)	191
ApeKI	GCWGC	4 cut(s)	47, 88, 682, 685
ApoI	RAATTY	2 cut(s)	467, 732
ArsI	GACNNNNNNTTYG	2 cut(s)	364, 396
AseI	ATTAAT	1 cut(s)	759
Asp700I	GAANNNNTTC	1 cut(s)	467
Asp718I	GGTACC	1 cut(s)	123
AspLEI	GCGC	2 cut(s)	369, 438
AsuC2I	CCSGG	2 cut(s)	128, 144
AsuHPI	GGTGA	6 cut(s)	79, 147, 308, 349, 369, 554
BaeGI	GKGCMC	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	123
BanII	GRGCYC	2 cut(s)	173, 320
BauI	CACGAG	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	499
Bbv12I	GWGCWC	2 cut(s)	173, 255
BbvI	GCAGC	4 cut(s)	34, 75, 672, 694
BccI	CCATC	6 cut(s)	106, 156, 533, 590, 623, 743
BcnI	CCSGG	2 cut(s)	128, 144
BcoDI	GTCTC	1 cut(s)	191
BcuI	ACTAGT	1 cut(s)	502
BfaI	CTAG	3 cut(s)	453, 503, 516
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	6 cut(s)	48, 86, 89, 188, 683, 686
BlsI	GCNGC	6 cut(s)	49, 87, 90, 189, 684, 687
Bme1390I	CCNGG	2 cut(s)	128, 144
BmiI	GGNNCC	4 cut(s)	125, 319, 642, 754
BmrFI	CCNGG	2 cut(s)	128, 144
BmrI	ACTGGG	1 cut(s)	257
BmsI	GCATC	3 cut(s)	38, 72, 338
BmuI	ACTGGG	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	499
Bpu10I	CCTNAGC	2 cut(s)	302, 408
BpuMI	CCSGG	2 cut(s)	128, 144
Bsa29I	ATCGAT	1 cut(s)	287
BsaAI	YACGTR	1 cut(s)	590
BsaJI	CCNNGG	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	263
Bse3DI	GCAATG	1 cut(s)	653
BseCI	ATCGAT	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	224
BseGI	GGATG	4 cut(s)	87, 136, 487, 754
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	653
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	263
BseRI	GAGGAG	2 cut(s)	114, 762
BseSI	GKGCMC	1 cut(s)	208
BseXI	GCAGC	4 cut(s)	34, 75, 672, 694
Bsh1236I	CGCG	3 cut(s)	369, 401, 438
BshNI	GGYRCC	1 cut(s)	123
BshVI	ATCGAT	1 cut(s)	287
BsiHKAI	GWGCWC	2 cut(s)	173, 255
BsiSI	CCGG	3 cut(s)	127, 143, 422
BslFI	GGGAC	1 cut(s)	647
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	647
Bsp1286I	GDGCHC	4 cut(s)	173, 208, 255, 320
Bsp143I	GATC	2 cut(s)	270, 284
Bsp19I	CCATGG	1 cut(s)	224
BspACI	CCGC	5 cut(s)	86, 188, 211, 401, 438
BspCNI	CTCAG	1 cut(s)	100
BspDI	ATCGAT	1 cut(s)	287
BspFNI	CGCG	3 cut(s)	369, 401, 438
BspHI	TCATGA	1 cut(s)	793
BspLI	GGNNCC	4 cut(s)	125, 319, 642, 754
BspT107I	GGYRCC	1 cut(s)	123
BsrDI	GCAATG	1 cut(s)	653
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	224
BssMI	GATC	2 cut(s)	270, 284
BssNAI	GTATAC	1 cut(s)	521
BssSI	CACGAG	1 cut(s)	254
BssT1I	CCWWGG	1 cut(s)	224
Bst1107I	GTATAC	1 cut(s)	521
Bst2BI	CACGAG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	358
BstBAI	YACGTR	1 cut(s)	590
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	3 cut(s)	108, 302, 408
BstDSI	CCRYGG	1 cut(s)	224
BstEII	GGTNACC	2 cut(s)	153, 296
BstF5I	GGATG	4 cut(s)	87, 136, 487, 754
BstFNI	CGCG	3 cut(s)	369, 401, 438
BstHHI	GCGC	2 cut(s)	369, 438
BstKTI	GATC	2 cut(s)	273, 287
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	2 cut(s)	270, 284
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	729
BstPI	GGTNACC	2 cut(s)	153, 296
BstSCI	CCNGG	2 cut(s)	126, 142
BstSLI	GKGCMC	1 cut(s)	208
BstUI	CGCG	3 cut(s)	369, 401, 438
BstV1I	GCAGC	4 cut(s)	34, 75, 672, 694
BstV2I	GAAGAC	1 cut(s)	499
BstX2I	RGATCY	1 cut(s)	270
BstXI	CCANNNNNNTGG	1 cut(s)	660
BstYI	RGATCY	1 cut(s)	270
BstZ17I	GTATAC	1 cut(s)	521
Bsu15I	ATCGAT	1 cut(s)	287
BsuTUI	ATCGAT	1 cut(s)	287
BtgI	CCRYGG	1 cut(s)	224
BtgZI	GCGATG	1 cut(s)	382
BtsCI	GGATG	4 cut(s)	87, 136, 487, 754
BtsI	GCAGTG	1 cut(s)	206
BtsIMutI	CAGTG	2 cut(s)	206, 270
Cac8I	GCNNGC	1 cut(s)	93
CciI	TCATGA	1 cut(s)	793
CfoI	GCGC	2 cut(s)	369, 438
ClaI	ATCGAT	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	124, 259
CviAII	CATG	4 cut(s)	119, 225, 726, 794
CviQI	GTAC	2 cut(s)	124, 259
DdeI	CTNAG	3 cut(s)	108, 302, 408
DpnI	GATC	2 cut(s)	272, 286
DpnII	GATC	2 cut(s)	270, 284
Ecl136II	GAGCTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	224
Eco24I	GRGCYC	2 cut(s)	173, 320
Eco53kI	GAGCTC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	36
Eco91I	GGTNACC	2 cut(s)	153, 296
EcoICRI	GAGCTC	1 cut(s)	171
EcoO65I	GGTNACC	2 cut(s)	153, 296
EcoRI	GAATTC	1 cut(s)	467
EcoT14I	CCWWGG	1 cut(s)	224
EcoT38I	GRGCYC	2 cut(s)	173, 320
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	4 cut(s)	122, 228, 729, 797
FaiI	YATR	9 cut(s)	120, 140, 226, 432, 521, 668, 727, 746, 795
FaqI	GGGAC	1 cut(s)	647
FatI	CATG	4 cut(s)	118, 224, 725, 793
FauI	CCCGC	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	520
Fnu4HI	GCNGC	6 cut(s)	48, 86, 89, 188, 683, 686
FokI	GGATG	4 cut(s)	94, 143, 494, 761
FriOI	GRGCYC	2 cut(s)	173, 320
Fsp4HI	GCNGC	6 cut(s)	48, 86, 89, 188, 683, 686
FspBI	CTAG	3 cut(s)	453, 503, 516
GlaI	GCGC	2 cut(s)	368, 437
GluI	GCNGC	6 cut(s)	48, 86, 89, 188, 683, 686
HapII	CCGG	3 cut(s)	127, 143, 422
HhaI	GCGC	2 cut(s)	369, 438
Hin1II	CATG	4 cut(s)	122, 228, 729, 797
Hin6I	GCGC	2 cut(s)	367, 436
HinP1I	GCGC	2 cut(s)	367, 436
HinfI	GANTC	4 cut(s)	182, 416, 425, 767
HpaII	CCGG	3 cut(s)	127, 143, 422
HphI	GGTGA	6 cut(s)	79, 147, 308, 349, 369, 554
Hpy166II	GTNNAC	4 cut(s)	10, 415, 521, 545
Hpy188I	TCNGA	3 cut(s)	55, 394, 473
Hpy188III	TCNNGA	5 cut(s)	79, 282, 700, 737, 794
Hpy8I	GTNNAC	4 cut(s)	10, 415, 521, 545
Hpy99I	CGWCG	1 cut(s)	394
HpyAV	CCTTC	1 cut(s)	390
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	589
HpyCH4V	TGCA	3 cut(s)	29, 682, 729
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	3 cut(s)	108, 302, 408
HpySE526I	ACGT	1 cut(s)	589
Hsp92II	CATG	4 cut(s)	122, 228, 729, 797
HspAI	GCGC	2 cut(s)	367, 436
KpnI	GGTACC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	270, 284
LmnI	GCTCC	6 cut(s)	101, 115, 176, 323, 449, 758
Lsp1109I	GCAGC	4 cut(s)	34, 75, 672, 694
LweI	GCATC	3 cut(s)	38, 72, 338
MaeI	CTAG	3 cut(s)	453, 503, 516
MaeII	ACGT	1 cut(s)	589
MaeIII	GTNAC	3 cut(s)	153, 296, 370
MalI	GATC	2 cut(s)	272, 286
MboI	GATC	2 cut(s)	270, 284
MboII	GAAGA	6 cut(s)	280, 499, 545, 548, 575, 626
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	4 cut(s)	173, 208, 255, 320
MluCI	AATT	4 cut(s)	147, 342, 467, 732
MlyI	GAGTC	3 cut(s)	191, 410, 434
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	8 cut(s)	92, 171, 332, 385, 397, 472, 699, 783
MroXI	GAANNNNTTC	1 cut(s)	467
MseI	TTAA	2 cut(s)	759, 799
MslI	CAYNNNNRTG	1 cut(s)	160
MspA1I	CMGCKG	2 cut(s)	88, 685
MspI	CCGG	3 cut(s)	127, 143, 422
MspR9I	CCNGG	2 cut(s)	128, 144
MvnI	CGCG	3 cut(s)	369, 401, 438
MwoI	GCNNNNNNNGC	1 cut(s)	101
NciI	CCSGG	2 cut(s)	128, 144
NcoI	CCATGG	1 cut(s)	224
NdeII	GATC	2 cut(s)	270, 284
NlaIII	CATG	4 cut(s)	122, 228, 729, 797
NlaIV	GGNNCC	4 cut(s)	125, 319, 642, 754
NmuCI	GTSAC	3 cut(s)	153, 296, 370
NspI	RCATGY	1 cut(s)	729
PagI	TCATGA	1 cut(s)	793
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	767
PflFI	GACNNNGTC	1 cut(s)	388
PkrI	GCNGC	6 cut(s)	49, 87, 90, 189, 684, 687
PleI	GAGTC	3 cut(s)	190, 410, 433
PpsI	GAGTC	3 cut(s)	190, 410, 433
Ppu21I	YACGTR	1 cut(s)	590
PshBI	ATTAAT	1 cut(s)	759
Psp124BI	GAGCTC	1 cut(s)	173
PspEI	GGTNACC	2 cut(s)	153, 296
PspN4I	GGNNCC	4 cut(s)	125, 319, 642, 754
PsuI	RGATCY	1 cut(s)	270
PsyI	GACNNNGTC	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	685
RsaI	GTAC	2 cut(s)	125, 260
RsaNI	GTAC	2 cut(s)	124, 259
RseI	CAYNNNNRTG	1 cut(s)	160
SacI	GAGCTC	1 cut(s)	173
SaqAI	TTAA	2 cut(s)	759, 799
SatI	GCNGC	6 cut(s)	48, 86, 89, 188, 683, 686
Sau3AI	GATC	2 cut(s)	270, 284
SchI	GAGTC	3 cut(s)	191, 410, 434
ScrFI	CCNGG	2 cut(s)	128, 144
SduI	GDGCHC	4 cut(s)	173, 208, 255, 320
SfaNI	GCATC	3 cut(s)	38, 72, 338
SmiMI	CAYNNNNRTG	1 cut(s)	160
SpeI	ACTAGT	1 cut(s)	502
Sse9I	AATT	4 cut(s)	147, 342, 467, 732
SsiI	CCGC	5 cut(s)	86, 188, 211, 401, 438
SspI	AATATT	1 cut(s)	780
SspMI	CTAG	3 cut(s)	453, 503, 516
SstI	GAGCTC	1 cut(s)	173
StyD4I	CCNGG	2 cut(s)	126, 142
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	1 cut(s)	592
TaqI	TCGA	2 cut(s)	287, 383
TasI	AATT	4 cut(s)	147, 342, 467, 732
TauI	GCSGC	2 cut(s)	88, 190
TfiI	GAWTC	1 cut(s)	767
Tru1I	TTAA	2 cut(s)	759, 799
Tru9I	TTAA	2 cut(s)	759, 799
TscAI	CASTG	2 cut(s)	213, 270
TseFI	GTSAC	3 cut(s)	153, 296, 370
TseI	GCWGC	4 cut(s)	47, 88, 682, 685
Tsp45I	GTSAC	3 cut(s)	153, 296, 370
TspDTI	ATGAA	4 cut(s)	546, 576, 665, 782
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	2 cut(s)	213, 270
Tth111I	GACNNNGTC	1 cut(s)	388
VspI	ATTAAT	1 cut(s)	759
XapI	RAATTY	2 cut(s)	467, 732
XceI	RCATGY	1 cut(s)	729
XcmI	CCANNNNNNNNNTGG	2 cut(s)	270, 289
XmiI	GTMKAC	1 cut(s)	520
XmnI	GAANNNNTTC	1 cut(s)	467
XspI	CTAG	3 cut(s)	453, 503, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.