Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021244.1

Orthogroup ID

OG0005182

Physical Location & Seq

Genomic Coordinates Forward (+)

2 .. 1114

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021244.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

atgacttatgaagcagttggtgtaattggtaatcttgtccactcttccccaagaatcaagaaacttgttcttcttgctggtgctttacaacctgttattgatttactaagttcaccttgtttggaaagccaacgagaagctgctcttttacttggtcagtttgctacggctgattctgattgcaaggcacacgttgttcaaaggggtgcggtacaaccattaattaagatgctccagtcacctgattcacaggtcagggagatgtcggcttttgcaatcaggaggttggcacaggacacacataaccaagctggcattgctcatatgcgggttactaacgaagatgttcaaagtcgaatagctttggcttttgctcatctctgtaagaatgatgattgccatgtcattttcattgaacacaaaggaatgaagctgctgttggggcttcttgagtcaaaaagcctgcagctgcaacatgatggttcattggccttgcacaaaatggctacaaaagccactccactctctcttgatgtgattgcggaatctctcatggtggtagcccaagctttatgcactggactacatataattttggcttacacattttatcagcattgttctatggttgtggaagcttctataatattgcgagtcacacagattgcccaaattaacagagcagtgaacatttgtcttgagcactgcacagtttttcttgagaaaagaggtgttgagaatgtgcacgaatggggttggtacaaactccgaattgtagtaaatgctatagtgggagttgattacttttttcaagctgcaacaatgagagaattcagacaagaggatgcaggaaatggtattccactagtcttcgcacctaatatacaagacagtgaaaaagatggtggacttattgtaaatgatgaagatgtgagagctggtgttgttttacatgatgatggagtgataattgtggaagatgatattactgatggggacaaggaacctactattccattgctttggaatattttcgtccatttgcagctgcctcttttggccaagaaaacaacattagcttatgaaacattcaaaattcaggaaactatggat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

Arm BTB

Protein Analysis

371

Amino Acids

41.07

Weight (kDa)

5.65

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005182)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14300 FvH4_3g19610 FvH4_4g30860 FvH4_5g18841
rosa_chinensis	RchiOBHm_Chr1g0357401 RchiOBHm_Chr2g0112171 RchiOBHm_Chr2g0125391 RchiOBHm_Chr5g0054711 RchiOBHm_Chr5g0064471 RchiOBHm_Chr6g0271351 RchiOBHm_Chr7g0191401 RchiOBHm_Chr7g0214711
rosa_laevigata	RLG00000017451 RLG00000022476
rosa_multiflora	Rmu_sc0000331.1_g000014 Rmu_sc0000795.1_g000108 Rmu_sc0004866.1_g000026 Rmu_sc0005111.1_g000002 Rmu_sc0006642.1_g000002 Rmu_sc0006695.1_g000080 Rmu_sc0009740.1_g000002 Rmu_sc0021244.1_g000001 Rmu_sc0042233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019300 Rroxscaffold_2G00085360
rosa_rugosa	Rorug04G0054100 Rorug05G0017000 Rorug06G0337100 Rorug07G0115500
rosa_samantha	Rh6AG133600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	209, 328, 542
AcoI	YGGCCR	1 cut(s)	1059
AcsI	RAATTY	2 cut(s)	830, 1095
AfaI	GTAC	2 cut(s)	213, 761
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	5 cut(s)	200, 350, 416, 812, 1093
AhlI	ACTAGT	1 cut(s)	865
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
Alw21I	GWGCWC	2 cut(s)	705, 747
Alw44I	GTGCAC	1 cut(s)	743
AoxI	GGCC	2 cut(s)	489, 1059
ApaLI	GTGCAC	1 cut(s)	743
ApeKI	GCWGC	7 cut(s)	140, 433, 466, 469, 815, 1045, 1048
ApoI	RAATTY	2 cut(s)	830, 1095
AseI	ATTAAT	1 cut(s)	221
Asp700I	GAANNNNTTC	2 cut(s)	345, 1031
AsuHPI	GGTGA	2 cut(s)	105, 231
BaeGI	GKGCMC	1 cut(s)	747
BalI	TGGCCA	1 cut(s)	1061
BbsI	GAAGAC	1 cut(s)	862
Bbv12I	GWGCWC	2 cut(s)	705, 747
BbvI	GCAGC	7 cut(s)	127, 420, 456, 478, 802, 1035, 1057
BccI	CCATC	4 cut(s)	473, 896, 953, 986
BceAI	ACGGC	1 cut(s)	183
BcuI	ACTAGT	1 cut(s)	865
BfaI	CTAG	1 cut(s)	866
BfmI	CTRYAG	2 cut(s)	464, 786
BisI	GCNGC	7 cut(s)	141, 434, 467, 470, 816, 1046, 1049
BlsI	GCNGC	7 cut(s)	142, 435, 468, 471, 817, 1047, 1050
BmiI	GGNNCC	1 cut(s)	1005
BmsI	GCATC	2 cut(s)	219, 835
BpiI	GAAGAC	1 cut(s)	862
BpmI	CTGGAG	1 cut(s)	218
BpuEI	CTTGAG	3 cut(s)	470, 719, 740
Bse1I	ACTGG	2 cut(s)	235, 583
Bse3DI	GCAATG	2 cut(s)	315, 1016
BseGI	GGATG	1 cut(s)	850
BseMI	GCAATG	2 cut(s)	315, 1016
BseNI	ACTGG	2 cut(s)	235, 583
BseSI	GKGCMC	1 cut(s)	747
BseXI	GCAGC	7 cut(s)	127, 420, 456, 478, 802, 1035, 1057
BsgI	GTGCAG	1 cut(s)	691
BshFI	GGCC	2 cut(s)	491, 1061
BsiHKAI	GWGCWC	2 cut(s)	705, 747
BslFI	GGGAC	1 cut(s)	1010
BsmFI	GGGAC	1 cut(s)	1010
BsnI	GGCC	2 cut(s)	491, 1061
Bsp1286I	GDGCHC	2 cut(s)	705, 747
BspACI	CCGC	3 cut(s)	209, 328, 542
BspANI	GGCC	2 cut(s)	491, 1061
BspLI	GGNNCC	1 cut(s)	1005
BspMAI	CTGCAG	1 cut(s)	468
BsrDI	GCAATG	2 cut(s)	315, 1016
BsrI	ACTGG	2 cut(s)	235, 583
Bst4CI	ACNGT	2 cut(s)	712, 893
Bst6I	CTCTTC	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	313, 464
BstDEI	CTNAG	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	850
BstMWI	GCNNNNNNNGC	3 cut(s)	317, 442, 512
BstSFI	CTRYAG	2 cut(s)	464, 786
BstSLI	GKGCMC	1 cut(s)	747
BstV1I	GCAGC	7 cut(s)	127, 420, 456, 478, 802, 1035, 1057
BstV2I	GAAGAC	1 cut(s)	862
BstXI	CCANNNNNNTGG	1 cut(s)	1023
BsuRI	GGCC	2 cut(s)	491, 1061
BtsCI	GGATG	1 cut(s)	850
BtsI	GCAGTG	2 cut(s)	690, 703
BtsIMutI	CAGTG	4 cut(s)	576, 690, 703, 898
Cac8I	GCNNGC	2 cut(s)	313, 464
Csp6I	GTAC	2 cut(s)	212, 760
CviAII	CATG	4 cut(s)	401, 476, 553, 953
CviQI	GTAC	2 cut(s)	212, 760
DdeI	CTNAG	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	1059
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	830
FaeI	CATG	4 cut(s)	404, 479, 556, 956
FalI	AAGNNNNNCTT	4 cut(s)	100, 132, 129, 161
FaqI	GGGAC	1 cut(s)	1010
FatI	CATG	4 cut(s)	400, 475, 552, 952
FauI	CCCGC	1 cut(s)	321
FauNDI	CATATG	1 cut(s)	324
Fnu4HI	GCNGC	7 cut(s)	141, 434, 467, 470, 816, 1046, 1049
FokI	GGATG	1 cut(s)	857
Fsp4HI	GCNGC	7 cut(s)	141, 434, 467, 470, 816, 1046, 1049
FspBI	CTAG	1 cut(s)	866
GluI	GCNGC	7 cut(s)	141, 434, 467, 470, 816, 1046, 1049
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	2 cut(s)	491, 1061
Hin1II	CATG	4 cut(s)	404, 479, 556, 956
HindIII	AAGCTT	2 cut(s)	567, 636
HinfI	GANTC	6 cut(s)	54, 173, 245, 452, 545, 654
HphI	GGTGA	2 cut(s)	105, 231
Hpy166II	GTNNAC	5 cut(s)	40, 113, 688, 745, 908
Hpy188I	TCNGA	3 cut(s)	178, 770, 836
Hpy188III	TCNNGA	7 cut(s)	58, 280, 449, 530, 698, 719, 1100
Hpy8I	GTNNAC	5 cut(s)	40, 113, 688, 745, 908
HpyCH4III	ACNGT	2 cut(s)	712, 893
HpyCH4IV	ACGT	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	3 cut(s)	317, 442, 512
HpyF3I	CTNAG	1 cut(s)	107
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	4 cut(s)	404, 479, 556, 956
LmnI	GCTCC	1 cut(s)	237
Lsp1109I	GCAGC	7 cut(s)	127, 420, 456, 478, 802, 1035, 1057
LweI	GCATC	2 cut(s)	219, 835
MaeI	CTAG	1 cut(s)	866
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	3 cut(s)	237, 331, 655
MboII	GAAGA	6 cut(s)	36, 62, 353, 862, 938, 989
MhlI	GDGCHC	2 cut(s)	705, 747
MlsI	TGGCCA	1 cut(s)	1061
MluCI	AATT	8 cut(s)	24, 222, 591, 672, 771, 830, 969, 1095
MluNI	TGGCCA	1 cut(s)	1061
MlyI	GAGTC	2 cut(s)	461, 663
MnlI	CCTC	4 cut(s)	276, 722, 835, 1062
Mox20I	TGGCCA	1 cut(s)	1061
MroXI	GAANNNNTTC	2 cut(s)	345, 1031
MscI	TGGCCA	1 cut(s)	1061
MseI	TTAA	3 cut(s)	221, 225, 675
MslI	CAYNNNNRTG	1 cut(s)	957
Msp20I	TGGCCA	1 cut(s)	1061
MspA1I	CMGCKG	2 cut(s)	469, 1048
MwoI	GCNNNNNNNGC	3 cut(s)	317, 442, 512
NdeI	CATATG	1 cut(s)	324
NlaIII	CATG	4 cut(s)	404, 479, 556, 956
NlaIV	GGNNCC	1 cut(s)	1005
NmuCI	GTSAC	2 cut(s)	237, 655
PacI	TTAATTAA	1 cut(s)	225
PdmI	GAANNNNTTC	2 cut(s)	345, 1031
PfeI	GAWTC	4 cut(s)	54, 173, 245, 545
PkrI	GCNGC	7 cut(s)	142, 435, 468, 471, 817, 1047, 1050
PleI	GAGTC	2 cut(s)	460, 662
PpsI	GAGTC	2 cut(s)	460, 662
PshBI	ATTAAT	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	1005
PstI	CTGCAG	1 cut(s)	468
PvuII	CAGCTG	2 cut(s)	469, 1048
RsaI	GTAC	2 cut(s)	213, 761
RsaNI	GTAC	2 cut(s)	212, 760
RseI	CAYNNNNRTG	1 cut(s)	957
SaqAI	TTAA	3 cut(s)	221, 225, 675
SatI	GCNGC	7 cut(s)	141, 434, 467, 470, 816, 1046, 1049
SchI	GAGTC	2 cut(s)	461, 663
SduI	GDGCHC	2 cut(s)	705, 747
SfaNI	GCATC	2 cut(s)	219, 835
SfcI	CTRYAG	2 cut(s)	464, 786
SmiMI	CAYNNNNRTG	1 cut(s)	957
SmlI	CTYRAG	3 cut(s)	449, 698, 719
SmoI	CTYRAG	3 cut(s)	449, 698, 719
SpeI	ACTAGT	1 cut(s)	865
Sse9I	AATT	8 cut(s)	24, 222, 591, 672, 771, 830, 969, 1095
SsiI	CCGC	3 cut(s)	209, 328, 542
SspI	AATATT	2 cut(s)	648, 1030
SspMI	CTAG	1 cut(s)	866
TaaI	ACNGT	2 cut(s)	712, 893
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	1 cut(s)	355
TasI	AATT	8 cut(s)	24, 222, 591, 672, 771, 830, 969, 1095
TfiI	GAWTC	4 cut(s)	54, 173, 245, 545
Tru1I	TTAA	3 cut(s)	221, 225, 675
Tru9I	TTAA	3 cut(s)	221, 225, 675
TscAI	CASTG	4 cut(s)	583, 690, 710, 898
TseFI	GTSAC	2 cut(s)	237, 655
TseI	GCWGC	7 cut(s)	140, 433, 466, 469, 815, 1045, 1048
Tsp45I	GTSAC	2 cut(s)	237, 655
TspDTI	ATGAA	6 cut(s)	24, 400, 443, 474, 939, 1098
TspRI	CASTG	4 cut(s)	583, 690, 710, 898
VneI	GTGCAC	1 cut(s)	743
VspI	ATTAAT	1 cut(s)	221
XapI	RAATTY	2 cut(s)	830, 1095
XmnI	GAANNNNTTC	2 cut(s)	345, 1031
XspI	CTAG	1 cut(s)	866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.