Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005182

Physical Location & Seq

Genomic Coordinates Forward (+)

16952997 .. 16954565

Gene Structure 1569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017451

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGGTGTATATGGTTATAGATCTTCAGTTCTGTTGAATATGCTTGCGGGTAAGAGAGCCGAAGTCAGCACAAATCTTGGAGCATACACGAGAACCTTCAATTACCATGCCAACAATACTAGTCATACAGAATTTACAGGTTGGCTATTTGTTTCCTTGAGACAAGAGGATGTAGGAAATGGTATTCCACTAGTCTTCGCACCTAGCACACAGGACAATGATGAAGATGGTGGACTTATTGTAAATGATGAAGATGTGAGAGCTGGTGTTGTTTTACGTGATGATGGAATGATGATTGTGGAAGATGATATTACTGATGGGGACAAGGAACCTACCATTCCATTGCTTTGGAATATGTTTGTTCATTTGCAATTGCCTTTTTTGGTCAAGAAAGCAACATTAGCTGATGAAACATGCAAAATTCAAGAAACTATGGATGGCACCATTAATGCTGATTCTCCTCCAATATTTTCAGGCTTTCATAATCAAGCTCTTATCATGATTTTGTACTCCTTGCGGTTGATTAGAGCCTGGCACAAAAGCATGGGTTACTTGCCATTTGAAGACTCTAATTATCCAACAATGCCTTGGTTCAGTTACATTTTCCTTGGCCTTGGGGTTACTCTGTGTTCAGGACATATTGCTGCAGACACTGCAAATGGTTATAGGACACCTATGGCACTTGTTTTGACACCCAAACGAGTTTATCCTCCAGCTGTACTAGCTGTACCCTCTCCAGCTATCCTACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm CH IQ

Protein Analysis

251

Amino Acids

27.68

Weight (kDa)

4.93

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005182)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14300 FvH4_3g19610 FvH4_4g30860 FvH4_5g18841
rosa_chinensis	RchiOBHm_Chr1g0357401 RchiOBHm_Chr2g0112171 RchiOBHm_Chr2g0125391 RchiOBHm_Chr5g0054711 RchiOBHm_Chr5g0064471 RchiOBHm_Chr6g0271351 RchiOBHm_Chr7g0191401 RchiOBHm_Chr7g0214711
rosa_laevigata	RLG00000017451 RLG00000022476
rosa_multiflora	Rmu_sc0000331.1_g000014 Rmu_sc0000795.1_g000108 Rmu_sc0004866.1_g000026 Rmu_sc0005111.1_g000002 Rmu_sc0006642.1_g000002 Rmu_sc0006695.1_g000080 Rmu_sc0009740.1_g000002 Rmu_sc0021244.1_g000001 Rmu_sc0042233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019300 Rroxscaffold_2G00085360
rosa_rugosa	Rorug04G0054100 Rorug05G0017000 Rorug06G0337100 Rorug07G0115500
rosa_samantha	Rh6AG133600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	440
AciI	CCGC	2 cut(s)	47, 517
AcsI	RAATTY	2 cut(s)	131, 420
AcuI	CTGAAG	1 cut(s)	9
AfaI	GTAC	3 cut(s)	509, 720, 729
AgsI	TTSAA	4 cut(s)	37, 100, 425, 563
AhlI	ACTAGT	2 cut(s)	119, 190
AjnI	CCWGG	1 cut(s)	530
AluBI	AGCT	6 cut(s)	263, 404, 491, 716, 725, 740
AluI	AGCT	6 cut(s)	263, 404, 491, 716, 725, 740
Alw26I	GTCTC	1 cut(s)	154
AlwNI	CAGNNNCTG	1 cut(s)	653
AoxI	GGCC	1 cut(s)	610
ApeKI	GCWGC	1 cut(s)	644
ApoI	RAATTY	2 cut(s)	131, 420
AseI	ATTAAT	1 cut(s)	447
BanI	GGYRCC	1 cut(s)	440
BauI	CACGAG	1 cut(s)	88
BbsI	GAAGAC	2 cut(s)	187, 570
BbvI	GCAGC	1 cut(s)	631
BccI	CCATC	4 cut(s)	221, 278, 311, 431
BciT130I	CCWGG	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	154
BcuI	ACTAGT	2 cut(s)	119, 190
BfaI	CTAG	4 cut(s)	120, 191, 204, 722
BfmI	CTRYAG	1 cut(s)	645
BglII	AGATCT	1 cut(s)	20
BisI	GCNGC	1 cut(s)	645
BlsI	GCNGC	1 cut(s)	646
Bme1390I	CCNGG	1 cut(s)	532
BmiI	GGNNCC	2 cut(s)	330, 442
BmrFI	CCNGG	1 cut(s)	532
BpiI	GAAGAC	2 cut(s)	187, 570
BpmI	CTGGAG	2 cut(s)	696, 720
BpuEI	CTTGAG	1 cut(s)	178
BsaAI	YACGTR	1 cut(s)	278
BsaJI	CCNNGG	3 cut(s)	587, 607, 613
Bse3DI	GCAATG	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	532
BseDI	CCNNGG	3 cut(s)	587, 607, 613
BseGI	GGATG	2 cut(s)	175, 442
BseMI	GCAATG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	450
BseXI	GCAGC	1 cut(s)	631
BshFI	GGCC	1 cut(s)	612
BshNI	GGYRCC	1 cut(s)	440
BslFI	GGGAC	1 cut(s)	335
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	612
Bsp143I	GATC	1 cut(s)	20
BspACI	CCGC	2 cut(s)	47, 517
BspANI	GGCC	1 cut(s)	612
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	2 cut(s)	330, 442
BspMAI	CTGCAG	1 cut(s)	649
BspT107I	GGYRCC	1 cut(s)	440
BsrDI	GCAATG	1 cut(s)	341
BssECI	CCNNGG	3 cut(s)	587, 607, 613
BssMI	GATC	1 cut(s)	20
BssSI	CACGAG	1 cut(s)	88
BssT1I	CCWWGG	3 cut(s)	587, 607, 613
Bst2BI	CACGAG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	532
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstBAI	YACGTR	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	175, 442
BstKTI	GATC	1 cut(s)	23
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	3 cut(s)	401, 653, 722
BstNI	CCWGG	1 cut(s)	532
BstNSI	RCATGY	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	530
BstSFI	CTRYAG	1 cut(s)	645
BstV1I	GCAGC	1 cut(s)	631
BstV2I	GAAGAC	2 cut(s)	187, 570
BstX2I	RGATCY	1 cut(s)	20
BstXI	CCANNNNNNTGG	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	612
BtsCI	GGATG	2 cut(s)	175, 442
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	1 cut(s)	651
Cac8I	GCNNGC	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	653
CciI	TCATGA	1 cut(s)	498
Csp6I	GTAC	3 cut(s)	508, 719, 728
CviAII	CATG	4 cut(s)	107, 414, 499, 544
CviQI	GTAC	3 cut(s)	508, 719, 728
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
Eco130I	CCWWGG	3 cut(s)	587, 607, 613
Eco57I	CTGAAG	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	530
EcoT14I	CCWWGG	3 cut(s)	587, 607, 613
ErhI	CCWWGG	3 cut(s)	587, 607, 613
FaeI	CATG	4 cut(s)	110, 417, 502, 547
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	4 cut(s)	106, 413, 498, 543
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	645
FokI	GGATG	2 cut(s)	182, 449
Fsp4HI	GCNGC	1 cut(s)	645
FspBI	CTAG	4 cut(s)	120, 191, 204, 722
GluI	GCNGC	1 cut(s)	645
GsuI	CTGGAG	2 cut(s)	696, 720
HaeIII	GGCC	1 cut(s)	612
Hin1II	CATG	4 cut(s)	110, 417, 502, 547
HinfI	GANTC	2 cut(s)	455, 566
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188III	TCNNGA	4 cut(s)	388, 425, 499, 633
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	4 cut(s)	370, 417, 647, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	401, 653, 722
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	4 cut(s)	110, 417, 502, 547
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	8 cut(s)	123, 197, 249, 459, 517, 544, 618, 726
Lsp1109I	GCAGC	1 cut(s)	631
MaeI	CTAG	4 cut(s)	120, 191, 204, 722
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	3 cut(s)	548, 596, 619
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	6 cut(s)	15, 187, 236, 263, 314, 575
MfeI	CAATTG	1 cut(s)	371
MflI	RGATCY	1 cut(s)	20
MluCI	AATT	5 cut(s)	100, 131, 371, 420, 571
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	602
MnlI	CCTC	4 cut(s)	160, 471, 720, 742
MseI	TTAA	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	716
MspR9I	CCNGG	1 cut(s)	532
MunI	CAATTG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	532
MwoI	GCNNNNNNNGC	3 cut(s)	401, 653, 722
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	4 cut(s)	110, 417, 502, 547
NlaIV	GGNNCC	2 cut(s)	330, 442
NspI	RCATGY	1 cut(s)	417
PagI	TCATGA	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	455
PkrI	GCNGC	1 cut(s)	646
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
Ppu21I	YACGTR	1 cut(s)	278
PshBI	ATTAAT	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	530
PspN4I	GGNNCC	2 cut(s)	330, 442
PstI	CTGCAG	1 cut(s)	649
PstNI	CAGNNNCTG	1 cut(s)	653
PsuI	RGATCY	1 cut(s)	20
PvuII	CAGCTG	1 cut(s)	716
RsaI	GTAC	3 cut(s)	509, 720, 729
RsaNI	GTAC	3 cut(s)	508, 719, 728
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	1 cut(s)	645
Sau3AI	GATC	1 cut(s)	20
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	1 cut(s)	532
SfcI	CTRYAG	1 cut(s)	645
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
SpeI	ACTAGT	2 cut(s)	119, 190
Sse9I	AATT	5 cut(s)	100, 131, 371, 420, 571
SsiI	CCGC	2 cut(s)	47, 517
SspI	AATATT	1 cut(s)	468
SspMI	CTAG	4 cut(s)	120, 191, 204, 722
StyD4I	CCNGG	1 cut(s)	530
StyI	CCWWGG	3 cut(s)	587, 607, 613
TaiI	ACGT	1 cut(s)	280
TasI	AATT	5 cut(s)	100, 131, 371, 420, 571
TatI	WGTACW	2 cut(s)	507, 718
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	658
TseI	GCWGC	1 cut(s)	644
TspDTI	ATGAA	5 cut(s)	237, 264, 353, 423, 470
TspRI	CASTG	1 cut(s)	658
VspI	ATTAAT	1 cut(s)	447
XapI	RAATTY	2 cut(s)	131, 420
XceI	RCATGY	1 cut(s)	417
XcmI	CCANNNNNNNNNTGG	1 cut(s)	585
XspI	CTAG	4 cut(s)	120, 191, 204, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.