Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005182

Physical Location & Seq

Genomic Coordinates Forward (+)

8693703 .. 8694711

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGATTTTTGGTTCAGCGAAGGTTAGGCAGACTAGCCTTTCTCTCTTTAAAAACTTTTCTCTGCCTTCTCTCTACCAAACCCACCTGCTTGGGTTTCATCTTCTTCCCCTCTCTCTTCCCCGATCTAGATCGCCGATCTGGATTAGTGGCTTGGGAGTTGGGGGAGAGATGAATCTCCCATTTTCCCTCTTCTTGGGGGTTGTTTATCTGCTTTTCGGCTGTTTTAATTTCCCCACCGTTTCGGGCGGTGCTTCTCGAAGCTTGGCTCTGTTTCTGGCCTTGTGGGTTTCGATCGATCCGGAGCATCCGATTTTTGGTTCTTTCTACTTTCATCGGCTTTTCCATTATGGGTTATCCTCTGCCATGGTCGGCGGTCCTCTTTGGTCGGATTCTTTTGAATCTGATCAGGCCCAACCAGCTCCTCTCTTCTTCGGAAGAGATCGAACAGTTGATTATCTGTCTCGTACAGATACCCATCTAAGTGAGGTTTGCTCACTATTGCACAGGGTGTTGCTTCAAGAATCTGTGTGCCTTATGGTGCCTGTTTCTTTGGTCCTTTTTCGTATCCCACCCACCCCCCTCTCCCGTCCGATTCATTCGGGTTGCGGGAACCTTGGTTCTTCGTTCATGGCAGATTTGATTTGTTATGGTGAAGCTGATGTCTGCATTAATATTTGGAAACCTGATGAATGGAGCTTCTGGACTTGCATGGGTCTTTCCGCTGTGCCTTTGATTTGGTTGGATCAGATTATTTCCCTACTTCATGCTCGAGGTGGTGTTGTGGTCTTGTCTCTCTTATCAGATGTTGCAGTTGTGTGGTTTTACTTCGTTGTGTGTTTGTTTGAGGCTTTTGAGCCATGTATCTCAGGAGGTCTTTGGACCTCTGTGTATATCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

300

Amino Acids

33.22

Weight (kDa)

5.95

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005182)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14300 FvH4_3g19610 FvH4_4g30860 FvH4_5g18841
rosa_chinensis	RchiOBHm_Chr1g0357401 RchiOBHm_Chr2g0112171 RchiOBHm_Chr2g0125391 RchiOBHm_Chr5g0054711 RchiOBHm_Chr5g0064471 RchiOBHm_Chr6g0271351 RchiOBHm_Chr7g0191401 RchiOBHm_Chr7g0214711
rosa_laevigata	RLG00000017451 RLG00000022476
rosa_multiflora	Rmu_sc0000331.1_g000014 Rmu_sc0000795.1_g000108 Rmu_sc0004866.1_g000026 Rmu_sc0005111.1_g000002 Rmu_sc0006642.1_g000002 Rmu_sc0006695.1_g000080 Rmu_sc0009740.1_g000002 Rmu_sc0021244.1_g000001 Rmu_sc0042233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019300 Rroxscaffold_2G00085360
rosa_rugosa	Rorug04G0054100 Rorug05G0017000 Rorug06G0337100 Rorug07G0115500
rosa_samantha	Rh6AG133600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	93
Acc36I	ACCTGC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	538
AccIII	TCCGGA	1 cut(s)	298
AciI	CCGC	4 cut(s)	246, 372, 606, 720
AclWI	GGATC	2 cut(s)	290, 750
AdeI	CACNNNGTG	1 cut(s)	508
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	2 cut(s)	193, 314
AgsI	TTSAA	2 cut(s)	398, 518
AloI	GAACNNNNNNTCC	2 cut(s)	601, 633
AluBI	AGCT	4 cut(s)	261, 419, 656, 696
AluI	AGCT	4 cut(s)	261, 419, 656, 696
Alw26I	GTCTC	2 cut(s)	465, 795
AlwI	GGATC	2 cut(s)	290, 750
Ama87I	CYCGRG	1 cut(s)	768
Aor13HI	TCCGGA	1 cut(s)	298
AoxI	GGCC	2 cut(s)	276, 408
AseI	ATTAAT	1 cut(s)	669
AspS9I	GGNCC	4 cut(s)	374, 409, 553, 879
AsuHPI	GGTGA	1 cut(s)	662
AvaI	CYCGRG	1 cut(s)	768
AvaII	GGWCC	3 cut(s)	374, 553, 879
BanI	GGYRCC	1 cut(s)	538
BccI	CCATC	1 cut(s)	483
BciVI	GTATCC	1 cut(s)	575
BclI	TGATCA	1 cut(s)	403
BcoDI	GTCTC	2 cut(s)	465, 795
BfaI	CTAG	2 cut(s)	33, 126
BfuAI	ACCTGC	1 cut(s)	93
BfuI	GTATCC	1 cut(s)	575
Bme18I	GGWCC	3 cut(s)	374, 553, 879
BmeT110I	CYCGRG	1 cut(s)	768
BmgT120I	GGNCC	4 cut(s)	374, 409, 553, 879
BmiI	GGNNCC	2 cut(s)	540, 611
BmsI	GCATC	1 cut(s)	313
BplI	GAGNNNNNCTC	2 cut(s)	476, 508
Bsa29I	ATCGAT	1 cut(s)	294
BsaBI	GATNNNNATC	2 cut(s)	127, 474
BsaJI	CCNNGG	2 cut(s)	363, 613
BsaWI	WCCGGW	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 314
Bse8I	GATNNNNATC	2 cut(s)	127, 474
BseAI	TCCGGA	1 cut(s)	298
BseCI	ATCGAT	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	363, 613
BseGI	GGATG	1 cut(s)	304
BseJI	GATNNNNATC	2 cut(s)	127, 474
BseLI	CCNNNNNNNGG	2 cut(s)	193, 314
BseMII	CTCAG	1 cut(s)	879
BseRI	GAGGAG	1 cut(s)	411
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	2 cut(s)	278, 410
BshNI	GGYRCC	1 cut(s)	538
BshVI	ATCGAT	1 cut(s)	294
BsiEI	CGRYCG	1 cut(s)	294
BsiHKCI	CYCGRG	1 cut(s)	768
BsiSI	CCGG	1 cut(s)	299
BslI	CCNNNNNNNGG	2 cut(s)	193, 314
BsmAI	GTCTC	2 cut(s)	465, 795
BsnI	GGCC	2 cut(s)	278, 410
BsoBI	CYCGRG	1 cut(s)	768
Bsp13I	TCCGGA	1 cut(s)	298
Bsp143I	GATC	8 cut(s)	122, 128, 135, 291, 295, 403, 439, 742
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	4 cut(s)	246, 372, 606, 720
BspANI	GGCC	2 cut(s)	278, 410
BspCNI	CTCAG	1 cut(s)	878
BspDI	ATCGAT	1 cut(s)	294
BspEI	TCCGGA	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	540, 611
BspMI	ACCTGC	1 cut(s)	93
BspPI	GGATC	2 cut(s)	290, 750
BspT107I	GGYRCC	1 cut(s)	538
BssECI	CCNNGG	2 cut(s)	363, 613
BssMI	GATC	8 cut(s)	122, 128, 135, 291, 295, 403, 439, 742
BssT1I	CCWWGG	2 cut(s)	363, 613
Bst4CI	ACNGT	2 cut(s)	238, 448
Bst6I	CTCTTC	4 cut(s)	120, 194, 430, 431
BstDEI	CTNAG	2 cut(s)	479, 865
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	8 cut(s)	125, 131, 138, 294, 298, 406, 442, 745
BstMAI	GTCTC	2 cut(s)	465, 795
BstMBI	GATC	8 cut(s)	122, 128, 135, 291, 295, 403, 439, 742
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstXI	CCANNNNNNTGG	1 cut(s)	89
Bsu15I	ATCGAT	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	575
BsuRI	GGCC	2 cut(s)	278, 410
BsuTUI	ATCGAT	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	304
BveI	ACCTGC	1 cut(s)	93
Cfr13I	GGNCC	4 cut(s)	374, 409, 553, 879
ClaI	ATCGAT	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	465
CviAII	CATG	5 cut(s)	364, 628, 709, 764, 858
CviQI	GTAC	1 cut(s)	465
DdeI	CTNAG	2 cut(s)	479, 865
DpnI	GATC	8 cut(s)	124, 130, 137, 293, 297, 405, 441, 744
DpnII	GATC	8 cut(s)	122, 128, 135, 291, 295, 403, 439, 742
DraI	TTTAAA	1 cut(s)	49
DraIII	CACNNNGTG	1 cut(s)	508
Eam1104I	CTCTTC	4 cut(s)	120, 194, 430, 431
EarI	CTCTTC	4 cut(s)	120, 194, 430, 431
Eco130I	CCWWGG	2 cut(s)	363, 613
Eco47I	GGWCC	3 cut(s)	374, 553, 879
Eco88I	CYCGRG	1 cut(s)	768
EcoT14I	CCWWGG	2 cut(s)	363, 613
ErhI	CCWWGG	2 cut(s)	363, 613
FaeI	CATG	5 cut(s)	367, 631, 712, 767, 861
FaiI	YATR	9 cut(s)	348, 365, 536, 629, 648, 710, 765, 859, 891
FatI	CATG	5 cut(s)	363, 627, 708, 763, 857
FauI	CCCGC	1 cut(s)	599
FbaI	TGATCA	1 cut(s)	403
FokI	GGATG	1 cut(s)	291
FspBI	CTAG	2 cut(s)	33, 126
HaeIII	GGCC	2 cut(s)	278, 410
HapII	CCGG	1 cut(s)	299
Hin1II	CATG	5 cut(s)	367, 631, 712, 767, 861
HindIII	AAGCTT	1 cut(s)	259
HinfI	GANTC	5 cut(s)	172, 389, 398, 521, 592
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	1 cut(s)	662
Hpy188I	TCNGA	7 cut(s)	309, 388, 403, 434, 591, 747, 802
Hpy188III	TCNNGA	7 cut(s)	126, 139, 255, 299, 518, 700, 867
HpyAV	CCTTC	2 cut(s)	13, 75
HpyCH4III	ACNGT	2 cut(s)	238, 448
HpyCH4V	TGCA	4 cut(s)	502, 666, 708, 809
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	2 cut(s)	479, 865
Hsp92II	CATG	5 cut(s)	367, 631, 712, 767, 861
Kpn2I	TCCGGA	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	8 cut(s)	122, 128, 135, 291, 295, 403, 439, 742
LmnI	GCTCC	3 cut(s)	301, 424, 693
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	2 cut(s)	33, 126
MalI	GATC	8 cut(s)	124, 130, 137, 293, 297, 405, 441, 744
MboI	GATC	8 cut(s)	122, 128, 135, 291, 295, 403, 439, 742
MboII	GAAGA	8 cut(s)	92, 95, 107, 181, 418, 421, 447, 612
MluCI	AATT	1 cut(s)	226
MmeI	TCCRAC	2 cut(s)	366, 720
MroI	TCCGGA	1 cut(s)	298
MseI	TTAA	4 cut(s)	48, 225, 669, 898
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	1 cut(s)	416
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	8 cut(s)	122, 128, 135, 291, 295, 403, 439, 742
NlaIII	CATG	5 cut(s)	367, 631, 712, 767, 861
NlaIV	GGNNCC	2 cut(s)	540, 611
PaeR7I	CTCGAG	1 cut(s)	768
PaqCI	CACCTGC	1 cut(s)	93
PfeI	GAWTC	5 cut(s)	172, 389, 398, 521, 592
Ple19I	CGATCG	1 cut(s)	294
PshBI	ATTAAT	1 cut(s)	669
PspN4I	GGNNCC	2 cut(s)	540, 611
PspPI	GGNCC	4 cut(s)	374, 409, 553, 879
PspXI	VCTCGAGB	1 cut(s)	768
PvuI	CGATCG	1 cut(s)	294
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	4 cut(s)	48, 225, 669, 898
Sau3AI	GATC	8 cut(s)	122, 128, 135, 291, 295, 403, 439, 742
Sau96I	GGNCC	4 cut(s)	374, 409, 553, 879
SfaNI	GCATC	1 cut(s)	313
Sfr274I	CTCGAG	1 cut(s)	768
SinI	GGWCC	3 cut(s)	374, 553, 879
SlaI	CTCGAG	1 cut(s)	768
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	768
SmoI	CTYRAG	1 cut(s)	768
Sse9I	AATT	1 cut(s)	226
SsiI	CCGC	4 cut(s)	246, 372, 606, 720
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	2 cut(s)	33, 126
StyI	CCWWGG	2 cut(s)	363, 613
TaaI	ACNGT	2 cut(s)	238, 448
TaqI	TCGA	5 cut(s)	256, 290, 294, 442, 769
TasI	AATT	1 cut(s)	226
TfiI	GAWTC	5 cut(s)	172, 389, 398, 521, 592
Tru1I	TTAA	4 cut(s)	48, 225, 669, 898
Tru9I	TTAA	4 cut(s)	48, 225, 669, 898
TspDTI	ATGAA	7 cut(s)	86, 185, 320, 584, 616, 702, 752
VpaK11BI	GGWCC	3 cut(s)	374, 553, 879
VspI	ATTAAT	1 cut(s)	669
XbaI	TCTAGA	1 cut(s)	125
XhoI	CTCGAG	1 cut(s)	768
XspI	CTAG	2 cut(s)	33, 126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.