Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006695.1

Orthogroup ID

OG0005182

Physical Location & Seq

Genomic Coordinates Reverse (-)

328609 .. 329697

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006695.1_g000080.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

atgaggactactgcatttggagcgtcgaatgaagttgtaaagtgctacatcaatgagattgctccaatggcgatgcacttagttccaattattatgaataaactccaccagactcttgaaggacagaggccttcaattgatgaaagagacaagcagaatgaactacaaggccttctttgtggttgcttgcaggtcatcatacagaagcttagggtcacacagattgtccaaattaatagagctgcaaacatttgtcttgagcattgcacaggtttgagagttatcgatttgaatgttaacaagatttactctgaactattgattatgcctatgcttgtcattcctgcaattgtttctatccttgaggatcaatgttgttggaatgttggttcattaatgacagaacatgaatcagtttttcttgagaaaggaggtgaagaaaatgtgcacgaatggggttggtacaaactccggattgtagcaaatgctatagtgggagttgattacttttttcaagctgcaacaatgagagaattcagacaagaggatgcaggaaatggtattccactagtcttcgcacctaatatacaagacagtgaaaaagatggtggacttattgtaaatgatgaagatgtgagagctggtgttgttttgcatgatgatggaatgatgattgtggaagatgatattactgatggggacaaggaacctactattccattgctttggaatatgttcgtccatttgcagttgcctcttttggccaagaaaacaacattagctgatgaaacatgcaaaattcaggaaactatggatggctccattaatgctgattctcctccaatattttcaggctttcgtgatctagctttgaccatgattttgtactccttgtggttgattagagcctggcacaaaagcatgggttatttgccatttgaagactccaattatccaacaataccttggttcatttacattttccttggccttggggttactctctgttcaggacatgttgctgcaaacactgcaaatggttatgggtttcaaatgatatcttgcaaaggtgcccaaattttgatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm CH IQ

Protein Analysis

362

Amino Acids

40.55

Weight (kDa)

4.84

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005182)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14300 FvH4_3g19610 FvH4_4g30860 FvH4_5g18841
rosa_chinensis	RchiOBHm_Chr1g0357401 RchiOBHm_Chr2g0112171 RchiOBHm_Chr2g0125391 RchiOBHm_Chr5g0054711 RchiOBHm_Chr5g0064471 RchiOBHm_Chr6g0271351 RchiOBHm_Chr7g0191401 RchiOBHm_Chr7g0214711
rosa_laevigata	RLG00000017451 RLG00000022476
rosa_multiflora	Rmu_sc0000331.1_g000014 Rmu_sc0000795.1_g000108 Rmu_sc0004866.1_g000026 Rmu_sc0005111.1_g000002 Rmu_sc0006642.1_g000002 Rmu_sc0006695.1_g000080 Rmu_sc0009740.1_g000002 Rmu_sc0021244.1_g000001 Rmu_sc0042233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019300 Rroxscaffold_2G00085360
rosa_rugosa	Rorug04G0054100 Rorug05G0017000 Rorug06G0337100 Rorug07G0115500
rosa_samantha	Rh6AG133600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	181
AccB1I	GGYRCC	1 cut(s)	1070
AccIII	TCCGGA	1 cut(s)	471
AclWI	GGATC	1 cut(s)	375
AcoI	YGGCCR	1 cut(s)	762
AcsI	RAATTY	3 cut(s)	533, 798, 1077
AfaI	GTAC	2 cut(s)	464, 887
AflIII	ACRYGT	1 cut(s)	1015
AgsI	TTSAA	6 cut(s)	119, 135, 292, 515, 941, 1052
AhlI	ACTAGT	1 cut(s)	568
AjnI	CCWGG	1 cut(s)	908
AloI	GAACNNNNNNTCC	2 cut(s)	373, 405
AluBI	AGCT	6 cut(s)	208, 242, 518, 641, 782, 869
AluI	AGCT	6 cut(s)	208, 242, 518, 641, 782, 869
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	1 cut(s)	141
Alw44I	GTGCAC	1 cut(s)	446
AlwI	GGATC	1 cut(s)	375
Aor13HI	TCCGGA	1 cut(s)	471
AoxI	GGCC	4 cut(s)	128, 169, 762, 988
ApaLI	GTGCAC	1 cut(s)	446
ApeKI	GCWGC	3 cut(s)	242, 518, 1022
ApoI	RAATTY	3 cut(s)	533, 798, 1077
ArsI	GACNNNNNNTTYG	2 cut(s)	865, 897
AseI	ATTAAT	3 cut(s)	234, 395, 825
Asp700I	GAANNNNTTC	1 cut(s)	734
AsuHPI	GGTGA	1 cut(s)	446
BaeGI	GKGCMC	2 cut(s)	450, 1075
BalI	TGGCCA	1 cut(s)	764
BanI	GGYRCC	1 cut(s)	1070
BbsI	GAAGAC	2 cut(s)	565, 948
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	3 cut(s)	229, 505, 1009
BccI	CCATC	4 cut(s)	599, 656, 689, 809
BciT130I	CCWGG	1 cut(s)	910
BcoDI	GTCTC	1 cut(s)	141
BcuI	ACTAGT	1 cut(s)	568
BfaI	CTAG	2 cut(s)	569, 866
BfmI	CTRYAG	1 cut(s)	489
BfuAI	ACCTGC	1 cut(s)	181
BisI	GCNGC	3 cut(s)	243, 519, 1023
BlsI	GCNGC	3 cut(s)	244, 520, 1024
Bme1390I	CCNGG	1 cut(s)	910
BmiI	GGNNCC	3 cut(s)	708, 820, 1072
BmrFI	CCNGG	1 cut(s)	910
BmsI	GCATC	2 cut(s)	63, 538
BpiI	GAAGAC	2 cut(s)	565, 948
Bpu10I	CCTNAGC	1 cut(s)	209
BpuEI	CTTGAG	3 cut(s)	278, 383, 443
Bsa29I	ATCGAT	1 cut(s)	285
BsaJI	CCNNGG	3 cut(s)	965, 985, 991
BsaWI	WCCGGW	1 cut(s)	471
Bse3DI	GCAATG	2 cut(s)	262, 719
BseAI	TCCGGA	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	910
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	3 cut(s)	965, 985, 991
BseGI	GGATG	2 cut(s)	553, 820
BseMI	GCAATG	2 cut(s)	262, 719
BseRI	GAGGAG	1 cut(s)	828
BseSI	GKGCMC	2 cut(s)	450, 1075
BseXI	GCAGC	3 cut(s)	229, 505, 1009
BshFI	GGCC	4 cut(s)	130, 171, 764, 990
BshNI	GGYRCC	1 cut(s)	1070
BshVI	ATCGAT	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	472
BslFI	GGGAC	1 cut(s)	713
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	713
BsnI	GGCC	4 cut(s)	130, 171, 764, 990
Bsp1286I	GDGCHC	2 cut(s)	450, 1075
Bsp13I	TCCGGA	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	367, 862
BspANI	GGCC	4 cut(s)	130, 171, 764, 990
BspDI	ATCGAT	1 cut(s)	285
BspEI	TCCGGA	1 cut(s)	471
BspLI	GGNNCC	3 cut(s)	708, 820, 1072
BspMI	ACCTGC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	1070
BsrDI	GCAATG	2 cut(s)	262, 719
BssECI	CCNNGG	3 cut(s)	965, 985, 991
BssMI	GATC	2 cut(s)	367, 862
BssT1I	CCWWGG	3 cut(s)	965, 985, 991
Bst2UI	CCWGG	1 cut(s)	910
Bst4CI	ACNGT	1 cut(s)	596
BstAPI	GCANNNNNTGC	1 cut(s)	1031
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	2 cut(s)	79, 209
BstF5I	GGATG	2 cut(s)	553, 820
BstKTI	GATC	2 cut(s)	370, 865
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	2 cut(s)	367, 862
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 68, 1031
BstNI	CCWGG	1 cut(s)	910
BstNSI	RCATGY	2 cut(s)	795, 1019
BstSCI	CCNGG	1 cut(s)	908
BstSFI	CTRYAG	1 cut(s)	489
BstSLI	GKGCMC	2 cut(s)	450, 1075
BstV1I	GCAGC	3 cut(s)	229, 505, 1009
BstV2I	GAAGAC	2 cut(s)	565, 948
BstXI	CCANNNNNNTGG	1 cut(s)	726
Bsu15I	ATCGAT	1 cut(s)	285
BsuRI	GGCC	4 cut(s)	130, 171, 764, 990
BsuTUI	ATCGAT	1 cut(s)	285
BtgZI	GCGATG	1 cut(s)	86
BtsCI	GGATG	2 cut(s)	553, 820
BtsI	GCAGTG	1 cut(s)	1029
BtsIMutI	CAGTG	2 cut(s)	601, 1029
BveI	ACCTGC	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	285
CseI	GACGC	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	463, 886
CviAII	CATG	6 cut(s)	407, 656, 792, 877, 922, 1016
CviQI	GTAC	2 cut(s)	463, 886
DdeI	CTNAG	2 cut(s)	79, 209
DpnI	GATC	2 cut(s)	369, 864
DpnII	GATC	2 cut(s)	367, 862
EaeI	YGGCCR	1 cut(s)	762
Eco130I	CCWWGG	3 cut(s)	965, 985, 991
Eco147I	AGGCCT	2 cut(s)	130, 171
Eco32I	GATATC	1 cut(s)	1059
EcoRI	GAATTC	1 cut(s)	533
EcoRII	CCWGG	1 cut(s)	908
EcoRV	GATATC	1 cut(s)	1059
EcoT14I	CCWWGG	3 cut(s)	965, 985, 991
ErhI	CCWWGG	3 cut(s)	965, 985, 991
FaeI	CATG	6 cut(s)	410, 659, 795, 880, 925, 1019
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	6 cut(s)	406, 655, 791, 876, 921, 1015
Fnu4HI	GCNGC	3 cut(s)	243, 519, 1023
FokI	GGATG	2 cut(s)	560, 827
Fsp4HI	GCNGC	3 cut(s)	243, 519, 1023
FspBI	CTAG	2 cut(s)	569, 866
GluI	GCNGC	3 cut(s)	243, 519, 1023
HaeIII	GGCC	4 cut(s)	130, 171, 764, 990
HapII	CCGG	1 cut(s)	472
HgaI	GACGC	1 cut(s)	12
Hin1II	CATG	6 cut(s)	410, 659, 795, 880, 925, 1019
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	4 cut(s)	112, 410, 833, 944
HpaI	GTTAAC	1 cut(s)	298
HpaII	CCGG	1 cut(s)	472
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	3 cut(s)	298, 448, 611
Hpy188I	TCNGA	2 cut(s)	313, 539
Hpy188III	TCNNGA	7 cut(s)	116, 257, 422, 472, 803, 860, 1011
Hpy8I	GTNNAC	3 cut(s)	298, 448, 611
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	3 cut(s)	113, 141, 182
HpyCH4III	ACNGT	1 cut(s)	596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 68, 1031
HpyF3I	CTNAG	2 cut(s)	79, 209
Hsp92II	CATG	6 cut(s)	410, 659, 795, 880, 925, 1019
Kpn2I	TCCGGA	1 cut(s)	471
KspAI	GTTAAC	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	367, 862
LmnI	GCTCC	3 cut(s)	20, 67, 824
Lsp1109I	GCAGC	3 cut(s)	229, 505, 1009
LweI	GCATC	2 cut(s)	63, 538
MaeI	CTAG	2 cut(s)	569, 866
MaeIII	GTNAC	2 cut(s)	214, 997
MalI	GATC	2 cut(s)	369, 864
MboI	GATC	2 cut(s)	367, 862
MboII	GAAGA	5 cut(s)	449, 565, 641, 692, 953
MfeI	CAATTG	2 cut(s)	135, 348
MhlI	GDGCHC	2 cut(s)	450, 1075
MlsI	TGGCCA	1 cut(s)	764
MluCI	AATT	8 cut(s)	87, 135, 231, 348, 533, 798, 949, 1077
MluNI	TGGCCA	1 cut(s)	764
MlyI	GAGTC	2 cut(s)	106, 938
MmeI	TCCRAC	2 cut(s)	359, 980
MnlI	CCTC	6 cut(s)	120, 358, 425, 538, 765, 849
Mox20I	TGGCCA	1 cut(s)	764
MroI	TCCGGA	1 cut(s)	471
MroXI	GAANNNNTTC	1 cut(s)	734
MscI	TGGCCA	1 cut(s)	764
MseI	TTAA	4 cut(s)	234, 297, 395, 825
MslI	CAYNNNNRTG	1 cut(s)	660
Msp20I	TGGCCA	1 cut(s)	764
MspI	CCGG	1 cut(s)	472
MspR9I	CCNGG	1 cut(s)	910
MunI	CAATTG	2 cut(s)	135, 348
MvaI	CCWGG	1 cut(s)	910
MwoI	GCNNNNNNNGC	3 cut(s)	20, 68, 1031
NdeII	GATC	2 cut(s)	367, 862
NlaIII	CATG	6 cut(s)	410, 659, 795, 880, 925, 1019
NlaIV	GGNNCC	3 cut(s)	708, 820, 1072
NmuCI	GTSAC	1 cut(s)	214
NspI	RCATGY	2 cut(s)	795, 1019
PceI	AGGCCT	2 cut(s)	130, 171
PciI	ACATGT	1 cut(s)	1015
PdmI	GAANNNNTTC	1 cut(s)	734
PfeI	GAWTC	2 cut(s)	410, 833
PkrI	GCNGC	3 cut(s)	244, 520, 1024
PleI	GAGTC	2 cut(s)	106, 938
PpsI	GAGTC	2 cut(s)	106, 938
PscI	ACATGT	1 cut(s)	1015
PshBI	ATTAAT	3 cut(s)	234, 395, 825
Psp6I	CCWGG	1 cut(s)	908
PspGI	CCWGG	1 cut(s)	908
PspN4I	GGNNCC	3 cut(s)	708, 820, 1072
RsaI	GTAC	2 cut(s)	464, 887
RsaNI	GTAC	2 cut(s)	463, 886
RseI	CAYNNNNRTG	1 cut(s)	660
SaqAI	TTAA	4 cut(s)	234, 297, 395, 825
SatI	GCNGC	3 cut(s)	243, 519, 1023
Sau3AI	GATC	2 cut(s)	367, 862
SchI	GAGTC	2 cut(s)	106, 938
ScrFI	CCNGG	1 cut(s)	910
SduI	GDGCHC	2 cut(s)	450, 1075
SfaNI	GCATC	2 cut(s)	63, 538
SfcI	CTRYAG	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	660
SmlI	CTYRAG	3 cut(s)	257, 362, 422
SmoI	CTYRAG	3 cut(s)	257, 362, 422
SpeI	ACTAGT	1 cut(s)	568
Sse9I	AATT	8 cut(s)	87, 135, 231, 348, 533, 798, 949, 1077
SseBI	AGGCCT	2 cut(s)	130, 171
SspI	AATATT	1 cut(s)	846
SspMI	CTAG	2 cut(s)	569, 866
StuI	AGGCCT	2 cut(s)	130, 171
StyD4I	CCNGG	1 cut(s)	908
StyI	CCWWGG	3 cut(s)	965, 985, 991
TaaI	ACNGT	1 cut(s)	596
TaqI	TCGA	2 cut(s)	26, 285
TasI	AATT	8 cut(s)	87, 135, 231, 348, 533, 798, 949, 1077
TatI	WGTACW	1 cut(s)	885
TfiI	GAWTC	2 cut(s)	410, 833
Tru1I	TTAA	4 cut(s)	234, 297, 395, 825
Tru9I	TTAA	4 cut(s)	234, 297, 395, 825
TscAI	CASTG	2 cut(s)	601, 1036
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	3 cut(s)	242, 518, 1022
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	9 cut(s)	45, 110, 156, 174, 381, 423, 642, 801, 961
TspRI	CASTG	2 cut(s)	601, 1036
VneI	GTGCAC	1 cut(s)	446
VspI	ATTAAT	3 cut(s)	234, 395, 825
XapI	RAATTY	3 cut(s)	533, 798, 1077
XceI	RCATGY	2 cut(s)	795, 1019
XcmI	CCANNNNNNNNNTGG	1 cut(s)	963
XmnI	GAANNNNTTC	1 cut(s)	734
XspI	CTAG	2 cut(s)	569, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.