Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005182

Physical Location & Seq

Genomic Coordinates Reverse (-)

70386752 .. 70387378

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34045

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTTTCTCTCATTCGGTTTGTTTTTGTCCGTTTTCTTTCCCTCTACCGTCTTGGGTAGTTTTGCTCGGAGCTTGTCTCCGTTTCTGGCCCTGTGGGTTCCTCTTGTTCCCATTTTTCCTTTTTCCGGTTGTTTCTTTCTTCATCCTCTTCCCCTAGTTGTTCTTTCTTCTTCCATGATCGGTTACTTCGCTCCTCGGAACTTTTTAAGTGGGGTTTACTCATTATTGCACTGGGTGATGCTACAAGAGGTTGTGTACCTTTCGGTGCCTGTTTCTTTGGTCCCTTACCGGATCTCACCTAATCCTTTCATCAGGTTTATACCGGTTGTTGTTGTTCTGGCTACTTTGTTCTTGGCAGATTTGGTTCGATGTGGTGAAGGTGATGTTTGCAAATACCTCTGGAAATCTGATGGTTGGGACATTGAATTTGATATGGGTCCTTCCTCTGCGCTTTCGATTTTGACGGATTTGGTGGATCGGCTACTTTGCGGTGGTGCGGCGGTCTCATCCTTCTTGTCGGTGGTTGCAGATCGTACTGGTTCTGGTGTTGTTTTGCTTGGGGCTTTTCGGTCCTTGTTGTTGGTTTTCTTGGGAGGTTTTGTGCCTCTCTGTAATAGCTTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

22.73

Weight (kDa)

6.03

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005182)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14300 FvH4_3g19610 FvH4_4g30860 FvH4_5g18841
rosa_chinensis	RchiOBHm_Chr1g0357401 RchiOBHm_Chr2g0112171 RchiOBHm_Chr2g0125391 RchiOBHm_Chr5g0054711 RchiOBHm_Chr5g0064471 RchiOBHm_Chr6g0271351 RchiOBHm_Chr7g0191401 RchiOBHm_Chr7g0214711
rosa_laevigata	RLG00000017451 RLG00000022476
rosa_multiflora	Rmu_sc0000331.1_g000014 Rmu_sc0000795.1_g000108 Rmu_sc0004866.1_g000026 Rmu_sc0005111.1_g000002 Rmu_sc0006642.1_g000002 Rmu_sc0006695.1_g000080 Rmu_sc0009740.1_g000002 Rmu_sc0021244.1_g000001 Rmu_sc0042233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019300 Rroxscaffold_2G00085360
rosa_rugosa	Rorug04G0054100 Rorug05G0017000 Rorug06G0337100 Rorug07G0115500
rosa_samantha	Rh6AG133600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	265
AciI	CCGC	3 cut(s)	489, 497, 500
AclWI	GGATC	2 cut(s)	299, 483
AcsI	RAATTY	1 cut(s)	425
AdeI	CACNNNGTG	1 cut(s)	235
AfaI	GTAC	2 cut(s)	257, 535
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgeI	ACCGGT	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	425
AluBI	AGCT	2 cut(s)	72, 618
AluI	AGCT	2 cut(s)	72, 618
Alw26I	GTCTC	2 cut(s)	81, 508
AlwI	GGATC	2 cut(s)	299, 483
AoxI	GGCC	1 cut(s)	87
ApoI	RAATTY	1 cut(s)	425
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
AsiGI	ACCGGT	1 cut(s)	322
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	4 cut(s)	88, 280, 437, 570
AsuHPI	GGTGA	4 cut(s)	247, 288, 386, 392
AvaII	GGWCC	3 cut(s)	280, 437, 570
BanI	GGYRCC	1 cut(s)	265
BccI	CCATC	1 cut(s)	404
BcoDI	GTCTC	2 cut(s)	81, 508
BfaI	CTAG	1 cut(s)	155
BisI	GCNGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	499
Bme18I	GGWCC	3 cut(s)	280, 437, 570
BmgT120I	GGNCC	4 cut(s)	88, 280, 437, 570
BmiI	GGNNCC	4 cut(s)	99, 267, 282, 438
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	228
BmuI	ACTGGG	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
BsaI	GGTCTC	1 cut(s)	508
BsaJI	CCNNGG	1 cut(s)	194
BsaWI	WCCGGW	3 cut(s)	125, 288, 322
BsaXI	ACNNNNNCTCC	2 cut(s)	585, 615
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse118I	RCCGGY	1 cut(s)	322
Bse1I	ACTGG	2 cut(s)	236, 541
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	2 cut(s)	142, 506
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseNI	ACTGG	2 cut(s)	236, 541
BseRI	GAGGAG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	265
BshTI	ACCGGT	1 cut(s)	322
BsiSI	CCGG	3 cut(s)	126, 289, 323
BslFI	GGGAC	2 cut(s)	266, 431
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	2 cut(s)	81, 508
BsmFI	GGGAC	2 cut(s)	266, 431
BsnI	GGCC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	508
Bsp143I	GATC	4 cut(s)	177, 291, 475, 529
BspACI	CCGC	3 cut(s)	489, 497, 500
BspANI	GGCC	1 cut(s)	89
BspLI	GGNNCC	4 cut(s)	99, 267, 282, 438
BspPI	GGATC	2 cut(s)	299, 483
BspT107I	GGYRCC	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	508
BsrFI	RCCGGY	1 cut(s)	322
BsrI	ACTGG	2 cut(s)	236, 541
BssAI	RCCGGY	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	4 cut(s)	177, 291, 475, 529
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	153
BstF5I	GGATG	2 cut(s)	142, 506
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	4 cut(s)	180, 294, 478, 532
BstMAI	GTCTC	2 cut(s)	81, 508
BstMBI	GATC	4 cut(s)	177, 291, 475, 529
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	142, 506
BtsIMutI	CAGTG	1 cut(s)	229
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	322
Cfr13I	GGNCC	4 cut(s)	88, 280, 437, 570
Csp6I	GTAC	2 cut(s)	256, 534
CspAI	ACCGGT	1 cut(s)	322
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	6 cut(s)	72, 89, 341, 481, 563, 618
CviKI_1	RGCY	6 cut(s)	72, 89, 341, 481, 563, 618
CviQI	GTAC	2 cut(s)	256, 534
DpnI	GATC	4 cut(s)	179, 293, 477, 531
DpnII	GATC	4 cut(s)	177, 291, 475, 529
DraIII	CACNNNGTG	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	508
Eco47I	GGWCC	3 cut(s)	280, 437, 570
EcoO109I	RGGNCCY	1 cut(s)	437
FaeI	CATG	1 cut(s)	178
FaiI	YATR	3 cut(s)	176, 320, 434
FaqI	GGGAC	2 cut(s)	266, 431
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	498
FokI	GGATG	2 cut(s)	129, 493
Fsp4HI	GCNGC	1 cut(s)	498
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	3 cut(s)	126, 289, 323
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HpaII	CCGG	3 cut(s)	126, 289, 323
HphI	GGTGA	4 cut(s)	247, 288, 386, 392
Hpy166II	GTNNAC	2 cut(s)	217, 256
Hpy188I	TCNGA	3 cut(s)	69, 198, 409
Hpy188III	TCNNGA	1 cut(s)	400
Hpy8I	GTNNAC	2 cut(s)	217, 256
HpyAV	CCTTC	3 cut(s)	371, 450, 520
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	3 cut(s)	229, 390, 527
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	1 cut(s)	449
Kzo9I	GATC	4 cut(s)	177, 291, 475, 529
LmnI	GCTCC	2 cut(s)	69, 196
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	4 cut(s)	179, 293, 477, 531
MboI	GATC	4 cut(s)	177, 291, 475, 529
MboII	GAAGA	4 cut(s)	131, 140, 159, 162
MflI	RGATCY	1 cut(s)	291
MluCI	AATT	1 cut(s)	425
MnlI	CCTC	9 cut(s)	52, 111, 156, 204, 241, 407, 454, 587, 615
MseI	TTAA	2 cut(s)	206, 625
MspI	CCGG	3 cut(s)	126, 289, 323
NdeII	GATC	4 cut(s)	177, 291, 475, 529
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	4 cut(s)	99, 267, 282, 438
PinAI	ACCGGT	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	499
PpuMI	RGGWCCY	1 cut(s)	437
Psp5II	RGGWCCY	1 cut(s)	437
PspN4I	GGNNCC	4 cut(s)	99, 267, 282, 438
PspPI	GGNCC	4 cut(s)	88, 280, 437, 570
PspPPI	RGGWCCY	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	291
RsaI	GTAC	2 cut(s)	257, 535
RsaNI	GTAC	2 cut(s)	256, 534
SaqAI	TTAA	2 cut(s)	206, 625
SatI	GCNGC	1 cut(s)	498
Sau3AI	GATC	4 cut(s)	177, 291, 475, 529
Sau96I	GGNCC	4 cut(s)	88, 280, 437, 570
SetI	ASST	9 cut(s)	74, 252, 261, 301, 317, 382, 399, 598, 620
SfaNI	GCATC	1 cut(s)	228
SinI	GGWCC	3 cut(s)	280, 437, 570
Sse9I	AATT	1 cut(s)	425
SsiI	CCGC	3 cut(s)	489, 497, 500
SspMI	CTAG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	2 cut(s)	367, 455
TaqII	GACCGA	1 cut(s)	558
TasI	AATT	1 cut(s)	425
TauI	GCSGC	1 cut(s)	500
Tru1I	TTAA	2 cut(s)	206, 625
Tru9I	TTAA	2 cut(s)	206, 625
TscAI	CASTG	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	131, 298
TspGWI	ACGGA	3 cut(s)	19, 69, 479
TspRI	CASTG	1 cut(s)	236
VpaK11BI	GGWCC	3 cut(s)	280, 437, 570
XapI	RAATTY	1 cut(s)	425
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.