Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005182

Physical Location & Seq

Genomic Coordinates Forward (+)

23558082 .. 23562024

Gene Structure 3943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00019300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGAGGTCACATATAGCAATTTACTTGCAGCATTTGTCAAGTCTGGTATTGTTCTACATGATGATTATCGGAGATGATATTGCTGATGGGAATAAGGAGCTTACTATTTCCTTGCTTTGGAATATGTTTGTTCATTTGCGGTTACCTCCTTTGGTCAAGAAAACAACATTAGCTGCTGAAATATGCAAAATTCAGGGAAATATGGATTGCTTCATTAATGTTGAATTTACAAGTTTGGAGTTGCTGCCAAATGAGTATTACATTGATCAAGTAGATATCAAGGCTGTTATTGTAATTGTAATTATTCAATTGCATTCAAATGAAGCTGCTGAGATATACAAAGAGTTGAATATGATGGCAGGGAGTGCATATAAGTTTGTGCAAGAGAGTGAAGAGATCAATGGAAAATGTACTGCACCTGCAATTACTCCAATGGTTTCAGAAGAAAATGAACATGTTTTGTTTGCCAATGTCATTTTGCAGGTCCTTGATTTCTCTACTTATTCAGTTGATAATCGTGAGGTCTTATCCCATGATCATGGTGACAATGGCCTTGTTGCTCTTCATCTTATACTTTGTTTATTAATTAATGGTGACTCAAACACCATAGTAATCAATTGGCTATCAAAGCTCAAGACTCATGCTGGAAGCTCAACTTTGAATGTGGATAAAGTAAAAGTATCTCATCACTTGGACAAATCTGATGTGCTCAGGGCCACTCAAATGACCAACTTTGAAGAGAAAGATGACTTGTTCCCTTACTTACTTCATTGGGGTATCACGTTGATCGTCGTCTACTTTGAGTTTGTCTCTACTATATCCATTTATGGTTGCTTCTTGTATAACATTTTGGGGGTTGCTTTTGACAATACGATGGCTCTCCAGCTGGTCAGCATAGTTGCTTATGCTCTTGGAACTTCACTCCATGCTTTTGAATGGTATTGGGATAAAATGTTCTTATTGTTGGCAATATCTGTAGTTCTGGATCCTCAGGTGTTAAAGAGAATTTTTGGTGACTTGGATGATGAAGCACGGACAATTTTTGTAAGACATTTCAAGCTTGAGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm CH IQ

Protein Analysis

356

Amino Acids

40.42

Weight (kDa)

5.03

Isoelectric Point (pI)

27.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005182)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14300 FvH4_3g19610 FvH4_4g30860 FvH4_5g18841
rosa_chinensis	RchiOBHm_Chr1g0357401 RchiOBHm_Chr2g0112171 RchiOBHm_Chr2g0125391 RchiOBHm_Chr5g0054711 RchiOBHm_Chr5g0064471 RchiOBHm_Chr6g0271351 RchiOBHm_Chr7g0191401 RchiOBHm_Chr7g0214711
rosa_laevigata	RLG00000017451 RLG00000022476
rosa_multiflora	Rmu_sc0000331.1_g000014 Rmu_sc0000795.1_g000108 Rmu_sc0004866.1_g000026 Rmu_sc0005111.1_g000002 Rmu_sc0006642.1_g000002 Rmu_sc0006695.1_g000080 Rmu_sc0009740.1_g000002 Rmu_sc0021244.1_g000001 Rmu_sc0042233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019300 Rroxscaffold_2G00085360
rosa_rugosa	Rorug04G0054100 Rorug05G0017000 Rorug06G0337100 Rorug07G0115500
rosa_samantha	Rh6AG133600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	427
Acc36I	ACCTGC	2 cut(s)	427, 472
AccI	GTMKAC	1 cut(s)	795
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	2 cut(s)	980, 993
AcsI	RAATTY	3 cut(s)	189, 224, 1005
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	1 cut(s)	117
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	8 cut(s)	224, 308, 318, 349, 661, 737, 935, 1057
AloI	GAACNNNNNNTCC	2 cut(s)	938, 970
AluBI	AGCT	7 cut(s)	100, 173, 326, 631, 651, 886, 1060
AluI	AGCT	7 cut(s)	100, 173, 326, 631, 651, 886, 1060
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	1 cut(s)	814
AlwI	GGATC	2 cut(s)	980, 993
AoxI	GGCC	2 cut(s)	550, 714
ApeKI	GCWGC	4 cut(s)	28, 173, 244, 326
ApoI	RAATTY	3 cut(s)	189, 224, 1005
AseI	ATTAAT	3 cut(s)	216, 584, 588
AspS9I	GGNCC	2 cut(s)	484, 714
AsuHPI	GGTGA	3 cut(s)	554, 605, 1025
AvaII	GGWCC	1 cut(s)	484
AxyI	CCTNAGG	1 cut(s)	990
BamHI	GGATCC	1 cut(s)	985
Bbv12I	GWGCWC	1 cut(s)	711
BbvI	GCAGC	4 cut(s)	40, 160, 231, 313
BccI	CCATC	3 cut(s)	80, 349, 868
BclI	TGATCA	2 cut(s)	265, 535
BcoDI	GTCTC	1 cut(s)	814
BfaI	CTAG	1 cut(s)	1069
BfmI	CTRYAG	1 cut(s)	975
BfuAI	ACCTGC	2 cut(s)	427, 472
BisI	GCNGC	4 cut(s)	29, 174, 245, 327
BlsI	GCNGC	4 cut(s)	30, 175, 246, 328
Bme18I	GGWCC	1 cut(s)	484
BmgT120I	GGNCC	2 cut(s)	484, 714
BmiI	GGNNCC	1 cut(s)	987
BplI	GAGNNNNNCTC	2 cut(s)	794, 826
BpmI	CTGGAG	1 cut(s)	866
Bpu10I	CCTNAGC	1 cut(s)	710
BpuEI	CTTGAG	1 cut(s)	617
BsaBI	GATNNNNATC	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse21I	CCTNAGG	1 cut(s)	990
Bse8I	GATNNNNATC	1 cut(s)	65
BseGI	GGATG	1 cut(s)	1027
BseJI	GATNNNNATC	1 cut(s)	65
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMII	CTCAG	3 cut(s)	321, 724, 1004
BseXI	GCAGC	4 cut(s)	40, 160, 231, 313
BsgI	GTGCAG	1 cut(s)	399
BshFI	GGCC	2 cut(s)	552, 716
BsiHKAI	GWGCWC	1 cut(s)	711
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	814
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	552, 716
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp143I	GATC	5 cut(s)	265, 396, 535, 786, 985
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	2 cut(s)	552, 716
BspCNI	CTCAG	3 cut(s)	322, 723, 1003
BspLI	GGNNCC	1 cut(s)	987
BspMI	ACCTGC	2 cut(s)	427, 472
BspPI	GGATC	2 cut(s)	980, 993
BspQI	GCTCTTC	1 cut(s)	567
BssMI	GATC	5 cut(s)	265, 396, 535, 786, 985
Bst6I	CTCTTC	3 cut(s)	387, 567, 732
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstDEI	CTNAG	3 cut(s)	330, 710, 990
BstEII	GGTNACC	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	1027
BstKTI	GATC	5 cut(s)	268, 399, 538, 789, 988
BstMAI	GTCTC	1 cut(s)	814
BstMBI	GATC	5 cut(s)	265, 396, 535, 786, 985
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 628
BstNSI	RCATGY	1 cut(s)	458
BstPI	GGTNACC	1 cut(s)	141
BstSFI	CTRYAG	1 cut(s)	975
BstV1I	GCAGC	4 cut(s)	40, 160, 231, 313
BstX2I	RGATCY	1 cut(s)	985
BstXI	CCANNNNNNTGG	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	985
Bsu36I	CCTNAGG	1 cut(s)	990
BsuRI	GGCC	2 cut(s)	552, 716
BtsCI	GGATG	1 cut(s)	1027
BveI	ACCTGC	2 cut(s)	427, 472
Cfr13I	GGNCC	2 cut(s)	484, 714
Csp6I	GTAC	1 cut(s)	411
CviAII	CATG	6 cut(s)	58, 455, 533, 539, 641, 926
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	3 cut(s)	330, 710, 990
DpnI	GATC	5 cut(s)	267, 398, 537, 788, 987
DpnII	GATC	5 cut(s)	265, 396, 535, 786, 985
Eam1104I	CTCTTC	3 cut(s)	387, 567, 732
EarI	CTCTTC	3 cut(s)	387, 567, 732
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	484
Eco81I	CCTNAGG	1 cut(s)	990
Eco91I	GGTNACC	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	484
EcoO65I	GGTNACC	1 cut(s)	141
EcoRV	GATATC	1 cut(s)	277
FaeI	CATG	6 cut(s)	61, 458, 536, 542, 644, 929
FalI	AAGNNNNNCTT	2 cut(s)	640, 672
FatI	CATG	6 cut(s)	57, 454, 532, 538, 640, 925
FbaI	TGATCA	2 cut(s)	265, 535
FblI	GTMKAC	1 cut(s)	795
Fnu4HI	GCNGC	4 cut(s)	29, 174, 245, 327
FokI	GGATG	1 cut(s)	1034
Fsp4HI	GCNGC	4 cut(s)	29, 174, 245, 327
FspBI	CTAG	1 cut(s)	1069
GluI	GCNGC	4 cut(s)	29, 174, 245, 327
GsuI	CTGGAG	1 cut(s)	866
HaeIII	GGCC	2 cut(s)	552, 716
Hin1II	CATG	6 cut(s)	61, 458, 536, 542, 644, 929
HindIII	AAGCTT	1 cut(s)	1058
HinfI	GANTC	2 cut(s)	596, 637
HphI	GGTGA	3 cut(s)	554, 605, 1025
Hpy166II	GTNNAC	1 cut(s)	796
Hpy188I	TCNGA	3 cut(s)	71, 442, 703
Hpy188III	TCNNGA	4 cut(s)	157, 518, 634, 983
Hpy8I	GTNNAC	1 cut(s)	796
Hpy99I	CGWCG	1 cut(s)	794
HpyCH4IV	ACGT	1 cut(s)	782
HpyCH4V	TGCA	8 cut(s)	28, 186, 313, 368, 382, 416, 422, 481
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 628
HpyF3I	CTNAG	3 cut(s)	330, 710, 990
HpySE526I	ACGT	1 cut(s)	782
Hsp92II	CATG	6 cut(s)	61, 458, 536, 542, 644, 929
Ksp22I	TGATCA	2 cut(s)	265, 535
Kzo9I	GATC	5 cut(s)	265, 396, 535, 786, 985
LguI	GCTCTTC	1 cut(s)	567
LmnI	GCTCC	1 cut(s)	97
Lsp1109I	GCAGC	4 cut(s)	40, 160, 231, 313
MaeI	CTAG	1 cut(s)	1069
MaeII	ACGT	1 cut(s)	782
MaeIII	GTNAC	5 cut(s)	6, 141, 542, 593, 1013
MalI	GATC	5 cut(s)	267, 398, 537, 788, 987
MboI	GATC	5 cut(s)	265, 396, 535, 786, 985
MboII	GAAGA	4 cut(s)	404, 455, 554, 749
MfeI	CAATTG	2 cut(s)	308, 616
MflI	RGATCY	1 cut(s)	985
MhlI	GDGCHC	1 cut(s)	711
MlyI	GAGTC	2 cut(s)	590, 631
MnlI	CCTC	4 cut(s)	156, 514, 999, 1057
MseI	TTAA	4 cut(s)	216, 584, 588, 998
MslI	CAYNNNNRTG	3 cut(s)	318, 537, 722
MspA1I	CMGCKG	1 cut(s)	886
MunI	CAATTG	2 cut(s)	308, 616
Mva1269I	GAATGC	1 cut(s)	313
MwoI	GCNNNNNNNGC	2 cut(s)	365, 628
NdeII	GATC	5 cut(s)	265, 396, 535, 786, 985
NlaIII	CATG	6 cut(s)	61, 458, 536, 542, 644, 929
NlaIV	GGNNCC	1 cut(s)	987
NmuCI	GTSAC	4 cut(s)	6, 542, 593, 1013
NspI	RCATGY	1 cut(s)	458
PacI	TTAATTAA	1 cut(s)	588
PaqCI	CACCTGC	1 cut(s)	427
PciI	ACATGT	1 cut(s)	454
PciSI	GCTCTTC	1 cut(s)	567
PctI	GAATGC	1 cut(s)	313
PkrI	GCNGC	4 cut(s)	30, 175, 246, 328
PleI	GAGTC	2 cut(s)	590, 631
PpsI	GAGTC	2 cut(s)	590, 631
PpuMI	RGGWCCY	1 cut(s)	484
PscI	ACATGT	1 cut(s)	454
PshBI	ATTAAT	3 cut(s)	216, 584, 588
Psp5II	RGGWCCY	1 cut(s)	484
PspEI	GGTNACC	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	987
PspPI	GGNCC	2 cut(s)	484, 714
PspPPI	RGGWCCY	1 cut(s)	484
PsuI	RGATCY	1 cut(s)	985
PvuII	CAGCTG	1 cut(s)	886
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
RseI	CAYNNNNRTG	3 cut(s)	318, 537, 722
SapI	GCTCTTC	1 cut(s)	567
SaqAI	TTAA	4 cut(s)	216, 584, 588, 998
SatI	GCNGC	4 cut(s)	29, 174, 245, 327
Sau3AI	GATC	5 cut(s)	265, 396, 535, 786, 985
Sau96I	GGNCC	2 cut(s)	484, 714
SchI	GAGTC	2 cut(s)	590, 631
SduI	GDGCHC	1 cut(s)	711
SfcI	CTRYAG	1 cut(s)	975
SinI	GGWCC	1 cut(s)	484
SmiMI	CAYNNNNRTG	3 cut(s)	318, 537, 722
SmlI	CTYRAG	2 cut(s)	632, 1061
SmoI	CTYRAG	2 cut(s)	632, 1061
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	1 cut(s)	1069
TaiI	ACGT	1 cut(s)	785
TatI	WGTACW	1 cut(s)	410
Tru1I	TTAA	4 cut(s)	216, 584, 588, 998
Tru9I	TTAA	4 cut(s)	216, 584, 588, 998
TseFI	GTSAC	4 cut(s)	6, 542, 593, 1013
TseI	GCWGC	4 cut(s)	28, 173, 244, 326
Tsp45I	GTSAC	4 cut(s)	6, 542, 593, 1013
TspDTI	ATGAA	7 cut(s)	122, 202, 336, 465, 554, 758, 1041
TspGWI	ACGGA	1 cut(s)	1048
VpaK11BI	GGWCC	1 cut(s)	484
VspI	ATTAAT	3 cut(s)	216, 584, 588
XapI	RAATTY	3 cut(s)	189, 224, 1005
XceI	RCATGY	1 cut(s)	458
XmiI	GTMKAC	1 cut(s)	795
XspI	CTAG	1 cut(s)	1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.