Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005182

Physical Location & Seq

Genomic Coordinates Forward (+)

32118453 .. 32119111

Gene Structure 659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19209

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCTCGGCCTTTTAATTTCAGTTTTCTTTCCGTCTGTTGTCCCGGGCGATTTTACTCAGAGTTTGTCTCCGTTTTGGCCCTGTTTGGTTCTTGTTGTTCCCAATCTTCCTTTTTCCAGTTTCTTCTGTCTTCATCCTCTTCCCCTTGTTCATCTTTCTTCTGCCAATATCGGTTCTCTCGCTCTTTGGAGCTTTCAAAGTGGGGTTTACCTCCTATCGCATTGGGTGGTGCTACAAGATTTTGTGTACCCTGTGGTGCCTGTTTCTATTTGGTTTGATGTGGTGGAGATGGTGTTGGCTTTGATCCTTGGAAATCTGATGGCTTGGTGCATCGAATTTGGCATGGGTCTCACTCCTGCGCGTTCGACATGGTTGGATTTGGTTGCTGACTTCTTTGCCATGGCTCGGTTGCTTCGTCCTTCTTGTCGGTGGTTGCAGTTAGTTGGTGGCTGTTGTTTGTTTGTTTTGTTCTTAGTTTGGGCTTTTTTTAGCCTTGTTGGTGGTTGTTGCTTCCTTTGGGAGGCTGTTGTCTCAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.96

Weight (kDa)

4.97

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005182)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14300 FvH4_3g19610 FvH4_4g30860 FvH4_5g18841
rosa_chinensis	RchiOBHm_Chr1g0357401 RchiOBHm_Chr2g0112171 RchiOBHm_Chr2g0125391 RchiOBHm_Chr5g0054711 RchiOBHm_Chr5g0064471 RchiOBHm_Chr6g0271351 RchiOBHm_Chr7g0191401 RchiOBHm_Chr7g0214711
rosa_laevigata	RLG00000017451 RLG00000022476
rosa_multiflora	Rmu_sc0000331.1_g000014 Rmu_sc0000795.1_g000108 Rmu_sc0004866.1_g000026 Rmu_sc0005111.1_g000002 Rmu_sc0006642.1_g000002 Rmu_sc0006695.1_g000080 Rmu_sc0009740.1_g000002 Rmu_sc0021244.1_g000001 Rmu_sc0042233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019300 Rroxscaffold_2G00085360
rosa_rugosa	Rorug04G0054100 Rorug05G0017000 Rorug06G0337100 Rorug07G0115500
rosa_samantha	Rh6AG133600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	256
AccII	CGCG	1 cut(s)	361
AclWI	GGATC	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	335
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	405, 520
AgsI	TTSAA	1 cut(s)	197
AluBI	AGCT	1 cut(s)	192
AluI	AGCT	1 cut(s)	192
Alw26I	GTCTC	3 cut(s)	72, 353, 535
AlwI	GGATC	1 cut(s)	298
Ama87I	CYCGRG	1 cut(s)	43
AoxI	GGCC	2 cut(s)	7, 77
ApoI	RAATTY	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	78
AsuC2I	CCSGG	2 cut(s)	44, 45
AvaI	CYCGRG	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	122
BccI	CCATC	2 cut(s)	283, 313
BcnI	CCSGG	2 cut(s)	44, 45
BcoDI	GTCTC	3 cut(s)	72, 353, 535
Bme1390I	CCNGG	2 cut(s)	44, 45
BmeT110I	CYCGRG	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	2 cut(s)	44, 45
BmsI	GCATC	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	122
BplI	GAGNNNNNCTC	2 cut(s)	52, 84
BpuMI	CCSGG	2 cut(s)	44, 45
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	3 cut(s)	43, 307, 399
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	405, 520
Bse1I	ACTGG	1 cut(s)	117
BseDI	CCNNGG	3 cut(s)	43, 307, 399
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	2 cut(s)	405, 520
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	361
BshFI	GGCC	2 cut(s)	9, 79
BshNI	GGYRCC	1 cut(s)	256
BsiHKCI	CYCGRG	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	405, 520
BsmAI	GTCTC	3 cut(s)	72, 353, 535
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	9, 79
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	303
Bsp19I	CCATGG	1 cut(s)	399
BspANI	GGCC	2 cut(s)	9, 79
BspCNI	CTCAG	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	298
BspT107I	GGYRCC	1 cut(s)	256
BspTNI	GGTCTC	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	3 cut(s)	43, 307, 399
BssMI	GATC	1 cut(s)	303
BssT1I	CCWWGG	2 cut(s)	307, 399
Bst6I	CTCTTC	1 cut(s)	144
BstDEI	CTNAG	3 cut(s)	57, 472, 532
BstDSI	CCRYGG	1 cut(s)	399
BstENI	CCTNNNNNAGG	1 cut(s)	518
BstF5I	GGATG	1 cut(s)	133
BstFNI	CGCG	1 cut(s)	361
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	1 cut(s)	306
BstMAI	GTCTC	3 cut(s)	72, 353, 535
BstMBI	GATC	1 cut(s)	303
BstSCI	CCNGG	2 cut(s)	42, 43
BstUI	CGCG	1 cut(s)	361
BstV2I	GAAGAC	1 cut(s)	122
BsuRI	GGCC	2 cut(s)	9, 79
BtgI	CCRYGG	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	540
CfoI	GCGC	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	78
Cfr9I	CCCGGG	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	3 cut(s)	343, 369, 400
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	3 cut(s)	57, 472, 532
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco130I	CCWWGG	2 cut(s)	307, 399
Eco31I	GGTCTC	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	518
EcoT14I	CCWWGG	2 cut(s)	307, 399
ErhI	CCWWGG	2 cut(s)	307, 399
FaeI	CATG	3 cut(s)	346, 372, 403
FaiI	YATR	3 cut(s)	344, 370, 401
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	3 cut(s)	342, 368, 399
FokI	GGATG	1 cut(s)	120
GlaI	GCGC	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	9, 79
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	361
Hin1II	CATG	3 cut(s)	346, 372, 403
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HpaII	CCGG	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	208, 247
Hpy188I	TCNGA	2 cut(s)	60, 318
Hpy8I	GTNNAC	2 cut(s)	208, 247
HpyAV	CCTTC	1 cut(s)	429
HpyCH4V	TGCA	2 cut(s)	330, 436
HpyF3I	CTNAG	3 cut(s)	57, 472, 532
Hsp92II	CATG	3 cut(s)	346, 372, 403
HspAI	GCGC	1 cut(s)	359
Kzo9I	GATC	1 cut(s)	303
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	6 cut(s)	57, 94, 130, 264, 273, 369
LweI	GCATC	1 cut(s)	339
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MboII	GAAGA	5 cut(s)	98, 115, 122, 131, 150
MluCI	AATT	2 cut(s)	15, 335
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	3 cut(s)	147, 221, 514
MseI	TTAA	1 cut(s)	14
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	44, 45
MvnI	CGCG	1 cut(s)	361
NciI	CCSGG	2 cut(s)	44, 45
NcoI	CCATGG	1 cut(s)	399
NdeII	GATC	1 cut(s)	303
NlaIII	CATG	3 cut(s)	346, 372, 403
NlaIV	GGNNCC	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	78
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	14
Sau3AI	GATC	1 cut(s)	303
Sau96I	GGNCC	1 cut(s)	78
ScrFI	CCNGG	2 cut(s)	44, 45
SetI	ASST	2 cut(s)	194, 213
SfaNI	GCATC	1 cut(s)	339
SmaI	CCCGGG	1 cut(s)	45
Sse9I	AATT	2 cut(s)	15, 335
StyD4I	CCNGG	2 cut(s)	42, 43
StyI	CCWWGG	2 cut(s)	307, 399
TaqI	TCGA	2 cut(s)	333, 365
TasI	AATT	2 cut(s)	15, 335
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	1 cut(s)	540
TspDTI	ATGAA	2 cut(s)	122, 140
TspGWI	ACGGA	2 cut(s)	21, 60
TspMI	CCCGGG	1 cut(s)	43
TspRI	CASTG	1 cut(s)	540
XagI	CCTNNNNNAGG	1 cut(s)	518
XapI	RAATTY	1 cut(s)	335
XmaI	CCCGGG	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.