Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005182

Physical Location & Seq

Genomic Coordinates Reverse (-)

20209125 .. 20210174

Gene Structure 1050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG133600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAAAGACTTAGTGGAATGCGGAGCGGTTCCGGCTCTGGTTAATCATCTACGGGCGCCACCGCCGGAGAGAGGTGGAAGCCACTGTCCGATTCCGTCTGAGCACGAGGTCGAGAAAGAAAGTGCTTTCGCGCTTAATCTCATCGCCGTTAAGCCGGAAAATCAACATCTCATAGTTGATGCTGGAGGTTTGTCGCCTCTTATTGATCTGTTAAAGAGGCACAATAGTAGTAGTGGCTCAAATGCGGGGGTGGTTGATGGTGTTATCAGGAGAGCTGCGGATGCAATCTGTAACATTTCGCATGAGAATAGAAACATTAAAAACCTTGTCAGGATTGAAGGTGGTATCCCTCCTCTTGTGGAGTTGCTTAACTTCATTGACACAAAGGTACAGAGGGCAGCTGCTGGGGCCCTGAAGATCCTAGCATTCAAAAATGACAAAAACAAAAATCAGATTTTTGAGTGCAATGCTTTGCCTAACCTGGTACTTATGTTGCTATCTGAGATTGCAACTATGACTTATGAAGCAGTTGGTGTAATTGGTAATCTTGTCCACTCTTCCCCAAGAATCAAGAAACTTGTTCTTCTTGCTGGGGCTTTACAACCTGTTATTGATTTACTGAGTTCACCTTGTTTGGAAAGCCAACGAGAAGCTGCTCTTTTACTTGGTCAGTTTGCTACGGCTGATTCTGATTGCAAGGCACACATTGTTCAAAGGGGTGCGGTACAACCATTAATTAAGATGCTCCAGTCACCTGATTCACAGGTCAGGGAGATGTCGGCTTTTGCAATCAGGAGGTTGGCACAGGACACACATAACCAAGCTGGCATTGCTCATATGCGGGTTACTAACGAAGATGTTCAAAGTCGAATAGCTTTGGCTTTTGCTCATCTCTGTAAGAATGATGATTGCCATGTCATTTTCATTGAACACAAAGGAATGAAGCTGCTGTTGGGGCTTCTTGAGTCAAAAAGCCTGCAGCTGCAACATGATGGTTCATTGGCCTTGCACAAAATGCTACAAAAGCCACTCCACTCTCTCTTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

Arm BTB

Protein Analysis

349

Amino Acids

37.93

Weight (kDa)

7.7

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm	PF00514	108 - 141	3e-06	Armadillo/beta-catenin-like repeat
Arm	PF00514	229 - 268	7.4e-06	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005182)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14300 FvH4_3g19610 FvH4_4g30860 FvH4_5g18841
rosa_chinensis	RchiOBHm_Chr1g0357401 RchiOBHm_Chr2g0112171 RchiOBHm_Chr2g0125391 RchiOBHm_Chr5g0054711 RchiOBHm_Chr5g0064471 RchiOBHm_Chr6g0271351 RchiOBHm_Chr7g0191401 RchiOBHm_Chr7g0214711
rosa_laevigata	RLG00000017451 RLG00000022476
rosa_multiflora	Rmu_sc0000331.1_g000014 Rmu_sc0000795.1_g000108 Rmu_sc0004866.1_g000026 Rmu_sc0005111.1_g000002 Rmu_sc0006642.1_g000002 Rmu_sc0006695.1_g000080 Rmu_sc0009740.1_g000002 Rmu_sc0021244.1_g000001 Rmu_sc0042233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019300 Rroxscaffold_2G00085360
rosa_rugosa	Rorug04G0054100 Rorug05G0017000 Rorug06G0337100 Rorug07G0115500
rosa_samantha	Rh6AG133600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AccBSI	CCGCTC	1 cut(s)	26
AccII	CGCG	1 cut(s)	131
AciI	CCGC	7 cut(s)	21, 26, 62, 245, 278, 722, 841
AclWI	GGATC	1 cut(s)	412
AcuI	CTGAAG	1 cut(s)	434
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	3 cut(s)	390, 486, 726
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgsI	TTSAA	5 cut(s)	338, 430, 713, 863, 929
AjnI	CCWGG	1 cut(s)	480
AjuI	GAANNNNNNNTTGG	2 cut(s)	935, 967
AluBI	AGCT	7 cut(s)	275, 401, 653, 824, 875, 946, 982
AluI	AGCT	7 cut(s)	275, 401, 653, 824, 875, 946, 982
Alw21I	GWGCWC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	412
AlwNI	CAGNNNCTG	1 cut(s)	404
AoxI	GGCC	2 cut(s)	408, 1002
ApaI	GGGCCC	1 cut(s)	412
ApeKI	GCWGC	7 cut(s)	275, 398, 401, 653, 946, 979, 982
AseI	ATTAAT	1 cut(s)	734
Asp700I	GAANNNNTTC	1 cut(s)	858
AspLEI	GCGC	2 cut(s)	58, 133
AspS9I	GGNCC	2 cut(s)	408, 409
AsuHPI	GGTGA	2 cut(s)	618, 744
BaeGI	GKGCMC	1 cut(s)	412
BaeI	ACNNNNGTAYC	2 cut(s)	476, 509
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	412
BauI	CACGAG	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	7 cut(s)	262, 388, 410, 640, 933, 969, 991
BccI	CCATC	2 cut(s)	251, 986
BceAI	ACGGC	2 cut(s)	131, 696
BciT130I	CCWGG	1 cut(s)	482
BciVI	GTATCC	1 cut(s)	356
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	977
BfoI	RGCGCY	1 cut(s)	59
BfuI	GTATCC	1 cut(s)	356
BisI	GCNGC	7 cut(s)	276, 399, 402, 654, 947, 980, 983
BlsI	GCNGC	7 cut(s)	277, 400, 403, 655, 948, 981, 984
Bme1390I	CCNGG	1 cut(s)	482
BmgT120I	GGNCC	2 cut(s)	408, 409
BmiI	GGNNCC	4 cut(s)	30, 57, 409, 410
BmrFI	CCNGG	1 cut(s)	482
BmsI	GCATC	3 cut(s)	169, 271, 732
BpmI	CTGGAG	2 cut(s)	204, 731
BpuEI	CTTGAG	1 cut(s)	983
BsaHI	GRCGYC	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	748
Bse3DI	GCAATG	2 cut(s)	472, 828
BseBI	CCWGG	1 cut(s)	482
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMI	GCAATG	2 cut(s)	472, 828
BseMII	CTCAG	3 cut(s)	90, 492, 611
BseNI	ACTGG	1 cut(s)	748
BseRI	GAGGAG	1 cut(s)	342
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	7 cut(s)	262, 388, 410, 640, 933, 969, 991
BseYI	CCCAGC	2 cut(s)	404, 590
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	2 cut(s)	410, 1004
BshNI	GGYRCC	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	3 cut(s)	32, 65, 155
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmI	GAATGC	2 cut(s)	23, 425
BsnI	GGCC	2 cut(s)	410, 1004
Bsp120I	GGGCCC	1 cut(s)	408
Bsp1286I	GDGCHC	2 cut(s)	105, 412
Bsp143I	GATC	2 cut(s)	205, 417
BspACI	CCGC	7 cut(s)	21, 26, 62, 245, 278, 722, 841
BspANI	GGCC	2 cut(s)	410, 1004
BspCNI	CTCAG	3 cut(s)	91, 493, 612
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	4 cut(s)	30, 57, 409, 410
BspMAI	CTGCAG	1 cut(s)	981
BspPI	GGATC	1 cut(s)	412
BspT107I	GGYRCC	1 cut(s)	55
BsrBI	CCGCTC	1 cut(s)	26
BsrDI	GCAATG	2 cut(s)	472, 828
BsrI	ACTGG	1 cut(s)	748
BssMI	GATC	2 cut(s)	205, 417
BssNI	GRCGYC	1 cut(s)	56
BssSI	CACGAG	1 cut(s)	104
Bst2BI	CACGAG	1 cut(s)	104
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	1 cut(s)	86
Bst6I	CTCTTC	1 cut(s)	562
BstACI	GRCGYC	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	1015
BstC8I	GCNNGC	2 cut(s)	826, 977
BstDEI	CTNAG	4 cut(s)	10, 99, 501, 620
BstF5I	GGATG	1 cut(s)	286
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	2 cut(s)	58, 133
BstKTI	GATC	2 cut(s)	208, 420
BstMBI	GATC	2 cut(s)	205, 417
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 281, 407, 830, 955, 1015, 1024
BstNI	CCWGG	1 cut(s)	482
BstSCI	CCNGG	1 cut(s)	480
BstSFI	CTRYAG	1 cut(s)	977
BstSLI	GKGCMC	1 cut(s)	412
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	7 cut(s)	262, 388, 410, 640, 933, 969, 991
BstX2I	RGATCY	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	417
BsuI	GTATCC	1 cut(s)	356
BsuRI	GGCC	2 cut(s)	410, 1004
BtgZI	GCGATG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	2 cut(s)	826, 977
CaiI	CAGNNNCTG	1 cut(s)	404
CfoI	GCGC	2 cut(s)	58, 133
Cfr13I	GGNCC	2 cut(s)	408, 409
CsiI	ACCWGGT	1 cut(s)	480
Csp6I	GTAC	3 cut(s)	389, 485, 725
CviAII	CATG	3 cut(s)	302, 914, 989
CviQI	GTAC	3 cut(s)	389, 485, 725
DdeI	CTNAG	4 cut(s)	10, 99, 501, 620
DinI	GGCGCC	1 cut(s)	57
DpnI	GATC	2 cut(s)	207, 419
DpnII	GATC	2 cut(s)	205, 417
Eam1104I	CTCTTC	1 cut(s)	562
EarI	CTCTTC	1 cut(s)	562
Eco24I	GRGCYC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	434
EcoO109I	RGGNCCY	2 cut(s)	408, 409
EcoRII	CCWGG	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	412
EgeI	GGCGCC	1 cut(s)	57
EheI	GGCGCC	1 cut(s)	57
FaeI	CATG	3 cut(s)	305, 917, 992
FalI	AAGNNNNNCTT	2 cut(s)	642, 674
FatI	CATG	3 cut(s)	301, 913, 988
FauI	CCCGC	2 cut(s)	238, 834
FauNDI	CATATG	1 cut(s)	837
Fnu4HI	GCNGC	7 cut(s)	276, 399, 402, 654, 947, 980, 983
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	1 cut(s)	412
Fsp4HI	GCNGC	7 cut(s)	276, 399, 402, 654, 947, 980, 983
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	2 cut(s)	57, 132
GluI	GCNGC	7 cut(s)	276, 399, 402, 654, 947, 980, 983
GsaI	CCCAGC	2 cut(s)	408, 594
GsuI	CTGGAG	2 cut(s)	204, 731
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	410, 1004
HapII	CCGG	3 cut(s)	32, 65, 155
HhaI	GCGC	2 cut(s)	58, 133
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	3 cut(s)	305, 917, 992
Hin6I	GCGC	2 cut(s)	56, 131
HinP1I	GCGC	2 cut(s)	56, 131
HinfI	GANTC	5 cut(s)	91, 567, 686, 758, 965
HpaII	CCGG	3 cut(s)	32, 65, 155
HphI	GGTGA	2 cut(s)	618, 744
Hpy166II	GTNNAC	2 cut(s)	553, 626
Hpy188I	TCNGA	5 cut(s)	90, 100, 453, 502, 691
Hpy188III	TCNNGA	7 cut(s)	112, 268, 331, 571, 793, 962, 1042
Hpy8I	GTNNAC	2 cut(s)	553, 626
HpyAV	CCTTC	1 cut(s)	332
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4V	TGCA	8 cut(s)	284, 465, 509, 696, 788, 979, 985, 1009
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 281, 407, 830, 955, 1015, 1024
HpyF3I	CTNAG	4 cut(s)	10, 99, 501, 620
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	3 cut(s)	305, 917, 992
HspAI	GCGC	2 cut(s)	56, 131
KasI	GGCGCC	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	205, 417
LmnI	GCTCC	2 cut(s)	23, 750
Lsp1109I	GCAGC	7 cut(s)	262, 388, 410, 640, 933, 969, 991
LweI	GCATC	3 cut(s)	169, 271, 732
MabI	ACCWGGT	1 cut(s)	480
MaeI	CTAG	1 cut(s)	422
MaeIII	GTNAC	3 cut(s)	290, 750, 844
MalI	GATC	2 cut(s)	207, 419
MbiI	CCGCTC	1 cut(s)	26
MboI	GATC	2 cut(s)	205, 417
MboII	GAAGA	4 cut(s)	427, 549, 575, 866
MflI	RGATCY	1 cut(s)	417
MhlI	GDGCHC	2 cut(s)	105, 412
MluCI	AATT	2 cut(s)	537, 735
Mly113I	GGCGCC	1 cut(s)	56
MlyI	GAGTC	1 cut(s)	974
MnlI	CCTC	9 cut(s)	65, 100, 179, 207, 210, 360, 363, 387, 789
MroXI	GAANNNNTTC	1 cut(s)	858
MseI	TTAA	8 cut(s)	42, 135, 150, 212, 318, 369, 734, 738
MspA1I	CMGCKG	2 cut(s)	401, 982
MspI	CCGG	3 cut(s)	32, 65, 155
MspR9I	CCNGG	1 cut(s)	482
Mva1269I	GAATGC	2 cut(s)	23, 425
MvaI	CCWGG	1 cut(s)	482
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	7 cut(s)	32, 281, 407, 830, 955, 1015, 1024
NarI	GGCGCC	1 cut(s)	56
NdeI	CATATG	1 cut(s)	837
NdeII	GATC	2 cut(s)	205, 417
NlaIII	CATG	3 cut(s)	305, 917, 992
NlaIV	GGNNCC	4 cut(s)	30, 57, 409, 410
NmuCI	GTSAC	1 cut(s)	750
PacI	TTAATTAA	1 cut(s)	738
PctI	GAATGC	2 cut(s)	23, 425
PdmI	GAANNNNTTC	1 cut(s)	858
PfeI	GAWTC	4 cut(s)	91, 567, 686, 758
PkrI	GCNGC	7 cut(s)	277, 400, 403, 655, 948, 981, 984
PleI	GAGTC	1 cut(s)	973
PluTI	GGCGCC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	973
PshBI	ATTAAT	1 cut(s)	734
Psp6I	CCWGG	1 cut(s)	480
PspFI	CCCAGC	2 cut(s)	404, 590
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	4 cut(s)	30, 57, 409, 410
PspOMI	GGGCCC	1 cut(s)	408
PspPI	GGNCC	2 cut(s)	408, 409
PstI	CTGCAG	1 cut(s)	981
PstNI	CAGNNNCTG	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	417
PvuII	CAGCTG	2 cut(s)	401, 982
RsaI	GTAC	3 cut(s)	390, 486, 726
RsaNI	GTAC	3 cut(s)	389, 485, 725
SaqAI	TTAA	8 cut(s)	42, 135, 150, 212, 318, 369, 734, 738
SatI	GCNGC	7 cut(s)	276, 399, 402, 654, 947, 980, 983
Sau3AI	GATC	2 cut(s)	205, 417
Sau96I	GGNCC	2 cut(s)	408, 409
SchI	GAGTC	1 cut(s)	974
ScrFI	CCNGG	1 cut(s)	482
SduI	GDGCHC	2 cut(s)	105, 412
SexAI	ACCWGGT	1 cut(s)	480
SfaNI	GCATC	3 cut(s)	169, 271, 732
SfcI	CTRYAG	1 cut(s)	977
SfoI	GGCGCC	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	962
SmoI	CTYRAG	1 cut(s)	962
Sse9I	AATT	2 cut(s)	537, 735
SsiI	CCGC	7 cut(s)	21, 26, 62, 245, 278, 722, 841
SspDI	GGCGCC	1 cut(s)	55
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	1 cut(s)	480
TaaI	ACNGT	1 cut(s)	86
TaqI	TCGA	2 cut(s)	111, 868
TasI	AATT	2 cut(s)	537, 735
TfiI	GAWTC	4 cut(s)	91, 567, 686, 758
Tru1I	TTAA	8 cut(s)	42, 135, 150, 212, 318, 369, 734, 738
Tru9I	TTAA	8 cut(s)	42, 135, 150, 212, 318, 369, 734, 738
TscAI	CASTG	1 cut(s)	89
TseFI	GTSAC	1 cut(s)	750
TseI	GCWGC	7 cut(s)	275, 398, 401, 653, 946, 979, 982
Tsp45I	GTSAC	1 cut(s)	750
TspDTI	ATGAA	6 cut(s)	17, 364, 537, 913, 956, 987
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	89
VspI	ATTAAT	1 cut(s)	734
XmnI	GAANNNNTTC	1 cut(s)	858
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.