Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005182

Physical Location & Seq

Genomic Coordinates Forward (+)

57351052 .. 57351858

Gene Structure 807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33181

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCTGTCACTCATGATTCTCCTCGTCAAACTGCCATTCCTTCCTGGAAAGAGGTATTTTATTCATTTGGTTATGCTGGAAAAAATTCTGCATCAATTCCATGATTTTTGTTTTGATAAGGATCTCAAGAATATATGGGAAGCAATTTCTATGTATCACCATTGCCAACTGAAGACACAACTTATTGATGATGCAGCCAACAAACTGATTAGCGAAAATCTTGCATTTACTGTGGGTGGTGTGTATGCCTTGAGGGGACAAACAGAGTGTGGATATTTTTTGTCAAGTATGTTGTGTGTTTATGCCAAAGGATGTGGTGAGTTTGGTGTCAATGATTATAGTGATAGGATTCCCCGTAATGTGAACGGGCAACAAGTACATGGCCTTATAGTTAATCTTGGGTTTGAGGGAGATCTTCACTTAAACACGTCATTGCTTGCTATGTATGCAAAGAGTGCATGCATGAAGAGTGCTGAGAAGGTTTTTGCTATTATACCTGAAGTTAGTGTTGTTTCTTGGAATGTCATGGTAATTGGGTATGACATGATATTTAAGAATAAAAAAGCTATTGAATATCTACGAAGAATGAAATTTTGGGACTTTGAACAATATGAGGTCACATATAGCAATTTACTTGCAGCATGTATCAAGTCTGGTATTGTTCTACATGATGATGGAATGATGATTGTCGGAGATGATATTGCTGATGGGGATAAGGAGCTTACTATTTCCTTGCTTTGGAATATGTTTGTTCATTTGCGGCTACCTCCTTTGGTCAAGAAAACAACATTAGCTACTGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

268

Amino Acids

30.51

Weight (kDa)

6.3

Isoelectric Point (pI)

33.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005182)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14300 FvH4_3g19610 FvH4_4g30860 FvH4_5g18841
rosa_chinensis	RchiOBHm_Chr1g0357401 RchiOBHm_Chr2g0112171 RchiOBHm_Chr2g0125391 RchiOBHm_Chr5g0054711 RchiOBHm_Chr5g0064471 RchiOBHm_Chr6g0271351 RchiOBHm_Chr7g0191401 RchiOBHm_Chr7g0214711
rosa_laevigata	RLG00000017451 RLG00000022476
rosa_multiflora	Rmu_sc0000331.1_g000014 Rmu_sc0000795.1_g000108 Rmu_sc0004866.1_g000026 Rmu_sc0005111.1_g000002 Rmu_sc0006642.1_g000002 Rmu_sc0006695.1_g000080 Rmu_sc0009740.1_g000002 Rmu_sc0021244.1_g000001 Rmu_sc0042233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019300 Rroxscaffold_2G00085360
rosa_rugosa	Rorug04G0054100 Rorug05G0017000 Rorug06G0337100 Rorug07G0115500
rosa_samantha	Rh6AG133600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	760
AclWI	GGATC	1 cut(s)	129
AcsI	RAATTY	2 cut(s)	84, 590
AcuI	CTGAAG	2 cut(s)	191, 519
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	738
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	2 cut(s)	572, 605
AjiI	CACGTC	1 cut(s)	429
AjnI	CCWGG	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	577, 609
AluBI	AGCT	3 cut(s)	566, 721, 794
AluI	AGCT	3 cut(s)	566, 721, 794
AlwI	GGATC	1 cut(s)	129
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	2 cut(s)	194, 638
ApoI	RAATTY	2 cut(s)	84, 590
Asp700I	GAANNNNTTC	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	149, 329
BbsI	GAAGAC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	206, 650
BccI	CCATC	2 cut(s)	668, 701
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	1 cut(s)	45
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	3 cut(s)	195, 639, 761
BlsI	GCNGC	3 cut(s)	196, 640, 762
Bme1390I	CCNGG	1 cut(s)	45
BmgBI	CACGTC	1 cut(s)	429
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	2 cut(s)	100, 181
BpiI	GAAGAC	1 cut(s)	179
BpuEI	CTTGAG	2 cut(s)	110, 271
BsaBI	GATNNNNATC	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	738
Bse3DI	GCAATG	2 cut(s)	160, 431
Bse8I	GATNNNNATC	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	317
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	738
BseMI	GCAATG	2 cut(s)	160, 431
BseMII	CTCAG	1 cut(s)	465
BseRI	GAGGAG	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	206, 650
BshFI	GGCC	1 cut(s)	384
BslFI	GGGAC	2 cut(s)	270, 611
BslI	CCNNNNNNNGG	1 cut(s)	738
BsmFI	GGGAC	2 cut(s)	270, 611
BsnI	GGCC	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	121, 412
BspACI	CCGC	1 cut(s)	760
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	1 cut(s)	466
BspHI	TCATGA	1 cut(s)	12
BspPI	GGATC	1 cut(s)	129
BsrDI	GCAATG	2 cut(s)	160, 431
BssMI	GATC	2 cut(s)	121, 412
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	461
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstC8I	GCNNGC	2 cut(s)	438, 460
BstDEI	CTNAG	1 cut(s)	474
BstF5I	GGATG	1 cut(s)	317
BstKTI	GATC	2 cut(s)	124, 415
BstMBI	GATC	2 cut(s)	121, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	446, 455
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	2 cut(s)	462, 645
BstSCI	CCNGG	1 cut(s)	43
BstV1I	GCAGC	2 cut(s)	206, 650
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	2 cut(s)	121, 412
BstYI	RGATCY	2 cut(s)	121, 412
BsuRI	GGCC	1 cut(s)	384
BtrI	CACGTC	1 cut(s)	429
BtsCI	GGATG	1 cut(s)	317
Cac8I	GCNNGC	2 cut(s)	438, 460
CciI	TCATGA	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	377
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviAII	CATG	9 cut(s)	13, 101, 380, 459, 463, 526, 544, 642, 668
CviJI	RGCY	6 cut(s)	197, 384, 566, 721, 763, 794
CviKI_1	RGCY	6 cut(s)	197, 384, 566, 721, 763, 794
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	2 cut(s)	123, 414
DpnII	GATC	2 cut(s)	121, 412
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Eco57I	CTGAAG	2 cut(s)	191, 519
EcoRII	CCWGG	1 cut(s)	43
EcoT22I	ATGCAT	1 cut(s)	464
FaeI	CATG	9 cut(s)	16, 104, 383, 462, 466, 529, 547, 645, 671
FaqI	GGGAC	2 cut(s)	270, 611
FatI	CATG	9 cut(s)	12, 100, 379, 458, 462, 525, 543, 641, 667
Fnu4HI	GCNGC	3 cut(s)	195, 639, 761
FokI	GGATG	1 cut(s)	324
Fsp4HI	GCNGC	3 cut(s)	195, 639, 761
GluI	GCNGC	3 cut(s)	195, 639, 761
HaeIII	GGCC	1 cut(s)	384
Hin1II	CATG	9 cut(s)	16, 104, 383, 462, 466, 529, 547, 645, 671
HinfI	GANTC	2 cut(s)	16, 349
HphI	GGTGA	2 cut(s)	149, 329
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	1 cut(s)	692
Hpy188III	TCNNGA	3 cut(s)	13, 127, 778
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	2 cut(s)	50, 472
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	428
HpyCH4V	TGCA	7 cut(s)	91, 194, 224, 449, 458, 462, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	446, 455
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	1 cut(s)	428
Hsp92II	CATG	9 cut(s)	16, 104, 383, 462, 466, 529, 547, 645, 671
Kzo9I	GATC	2 cut(s)	121, 412
LmnI	GCTCC	1 cut(s)	718
LpnPI	CCDG	5 cut(s)	30, 57, 62, 510, 639
Lsp1109I	GCAGC	2 cut(s)	206, 650
LweI	GCATC	2 cut(s)	100, 181
MaeII	ACGT	1 cut(s)	428
MaeIII	GTNAC	2 cut(s)	6, 616
MalI	GATC	2 cut(s)	123, 414
MboI	GATC	2 cut(s)	121, 412
MboII	GAAGA	4 cut(s)	184, 407, 478, 594
MflI	RGATCY	2 cut(s)	121, 412
MluCI	AATT	6 cut(s)	84, 95, 144, 531, 590, 628
MmeI	TCCRAC	1 cut(s)	670
MnlI	CCTC	6 cut(s)	32, 45, 246, 400, 607, 777
Mph1103I	ATGCAT	1 cut(s)	464
MroXI	GAANNNNTTC	1 cut(s)	84
MseI	TTAA	3 cut(s)	393, 422, 552
MslI	CAYNNNNRTG	1 cut(s)	672
MspR9I	CCNGG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	446, 455
NdeII	GATC	2 cut(s)	121, 412
NlaIII	CATG	9 cut(s)	16, 104, 383, 462, 466, 529, 547, 645, 671
NmuCI	GTSAC	2 cut(s)	6, 616
NsiI	ATGCAT	1 cut(s)	464
NspI	RCATGY	2 cut(s)	462, 645
PaeI	GCATGC	1 cut(s)	462
PagI	TCATGA	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	16, 349
PfoI	TCCNGGA	1 cut(s)	43
PkrI	GCNGC	3 cut(s)	196, 640, 762
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PsuI	RGATCY	2 cut(s)	121, 412
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	672
SaqAI	TTAA	3 cut(s)	393, 422, 552
SatI	GCNGC	3 cut(s)	195, 639, 761
Sau3AI	GATC	2 cut(s)	121, 412
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	9 cut(s)	56, 431, 483, 499, 568, 618, 723, 769, 796
SfaNI	GCATC	2 cut(s)	100, 181
SmiMI	CAYNNNNRTG	1 cut(s)	672
SmlI	CTYRAG	2 cut(s)	125, 250
SmoI	CTYRAG	2 cut(s)	125, 250
SphI	GCATGC	1 cut(s)	462
Sse9I	AATT	6 cut(s)	84, 95, 144, 531, 590, 628
SsiI	CCGC	1 cut(s)	760
StyD4I	CCNGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	1 cut(s)	431
TasI	AATT	6 cut(s)	84, 95, 144, 531, 590, 628
TatI	WGTACW	1 cut(s)	376
TauI	GCSGC	1 cut(s)	763
TfiI	GAWTC	2 cut(s)	16, 349
Tru1I	TTAA	3 cut(s)	393, 422, 552
Tru9I	TTAA	3 cut(s)	393, 422, 552
TseFI	GTSAC	2 cut(s)	6, 616
TseI	GCWGC	2 cut(s)	194, 638
Tsp45I	GTSAC	2 cut(s)	6, 616
TspDTI	ATGAA	4 cut(s)	53, 479, 602, 743
XapI	RAATTY	2 cut(s)	84, 590
XceI	RCATGY	2 cut(s)	462, 645
XmnI	GAANNNNTTC	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.