RchiOBHm_Chr2g0112171

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005182
Physical Location & Seq
Forward (+)
23991854 .. 23993789
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48567

Sequence Viewer

Length: 642 bp
ATGTATCTCTCTTTCGGTTTGTTTATTTCCGTTTTCTTTCCCTCTACCGTTTTGGGTAGTTTTGCTCGGAGCTCGTCTCCGTTTCTGGCCCTGTGGGTTCCTTTTGTTCCCAATTTTTCTTTTTCCGGTTGTTTCTTTCTTCATCCTCTTCACCTAGTTATTCTTTCTTCTGCCATGATCGGTTACTTCGCTCCTCGGAACTTTTTAAGTGGGGTTTGCTCACTATTGCACTGGGTGATGCTACAAGAGGCTGTGTACCTTTCGGTGCCTGTTTCTTTGGTCCCTTACCGGATCTCACCTAATCCTTTCATCTGGTTTCTACCGGTTGTTGTTGTTCTGGTTACTTTGTTCTTAGTAGATTTGGTTCAATGTGGTGAAGGCGATGTTTGCATTAACCTCTGGAAATTTGATGGTTGGAACATCGAATTCGATATGGGTCCTTCCTCTACGCTTTCGATTTTGTCAGATTTGGTTGATTGGCTACTTTGCTGTGGTGCGGCAGTCTCCTCCTTCTTGTCGGCTGTTGCAGATCGTACTGTTCTGGTGTTGTTTTGCTTTGTTGTTTGTTTGGGGCTTTTCGGTCCTTGTTGTTGGTTTTCTTGGGAGGTTTTGGGCCTCTCTGTGATGACTTGTTTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.65

Weight (kDa)

4.63

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 265
AciI CCGC 1 cut(s) 497
AclWI GGATC 1 cut(s) 299
AcsI RAATTY 2 cut(s) 404, 425
AdeI CACNNNGTG 1 cut(s) 235
AfaI GTAC 2 cut(s) 257, 535
AgeI ACCGGT 1 cut(s) 322
AgsI TTSAA 1 cut(s) 368
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 2 cut(s) 81, 508
AlwI GGATC 1 cut(s) 299
AoxI GGCC 2 cut(s) 87, 613
ApoI RAATTY 2 cut(s) 404, 425
AsiGI ACCGGT 1 cut(s) 322
AspS9I GGNCC 5 cut(s) 88, 280, 437, 581, 613
AsuHPI GGTGA 4 cut(s) 143, 247, 288, 386
AvaII GGWCC 3 cut(s) 280, 437, 581
BanI GGYRCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 74
BccI CCATC 1 cut(s) 404
BcoDI GTCTC 2 cut(s) 81, 508
BfaI CTAG 1 cut(s) 155
BisI GCNGC 1 cut(s) 498
BlsI GCNGC 1 cut(s) 499
Bme18I GGWCC 3 cut(s) 280, 437, 581
BmgT120I GGNCC 5 cut(s) 88, 280, 437, 581, 613
BmiI GGNNCC 4 cut(s) 99, 267, 282, 438
BmrI ACTGGG 1 cut(s) 241
BmsI GCATC 1 cut(s) 228
BmuI ACTGGG 1 cut(s) 241
BplI GAGNNNNNCTC 2 cut(s) 61, 93
BsaJI CCNNGG 1 cut(s) 194
BsaWI WCCGGW 3 cut(s) 125, 288, 322
Bse118I RCCGGY 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 236
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 236
BseRI GAGGAG 2 cut(s) 183, 496
BshFI GGCC 2 cut(s) 89, 615
BshNI GGYRCC 1 cut(s) 265
BshTI ACCGGT 1 cut(s) 322
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 3 cut(s) 126, 289, 323
BslFI GGGAC 1 cut(s) 266
BsmAI GTCTC 2 cut(s) 81, 508
BsmBI CGTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 2 cut(s) 89, 615
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 3 cut(s) 177, 291, 529
BspACI CCGC 1 cut(s) 497
BspANI GGCC 2 cut(s) 89, 615
BspLI GGNNCC 4 cut(s) 99, 267, 282, 438
BspPI GGATC 1 cut(s) 299
BspT107I GGYRCC 1 cut(s) 265
BsrFI RCCGGY 1 cut(s) 322
BsrI ACTGG 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 3 cut(s) 177, 291, 529
Bst4CI ACNGT 2 cut(s) 49, 538
Bst6I CTCTTC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 352
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 3 cut(s) 180, 294, 532
BstMAI GTCTC 2 cut(s) 81, 508
BstMBI GATC 3 cut(s) 177, 291, 529
BstMWI GCNNNNNNNGC 1 cut(s) 387
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
BsuRI GGCC 2 cut(s) 89, 615
BtgZI GCGATG 1 cut(s) 396
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 229
Cfr10I RCCGGY 1 cut(s) 322
Cfr13I GGNCC 5 cut(s) 88, 280, 437, 581, 613
Csp6I GTAC 2 cut(s) 256, 534
CspAI ACCGGT 1 cut(s) 322
CviAII CATG 1 cut(s) 175
CviJI RGCY 7 cut(s) 72, 89, 251, 481, 521, 574, 615
CviKI_1 RGCY 7 cut(s) 72, 89, 251, 481, 521, 574, 615
CviQI GTAC 2 cut(s) 256, 534
DdeI CTNAG 1 cut(s) 352
DpnI GATC 3 cut(s) 179, 293, 531
DpnII GATC 3 cut(s) 177, 291, 529
DraIII CACNNNGTG 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Ecl136II GAGCTC 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 74
Eco47I GGWCC 3 cut(s) 280, 437, 581
Eco53kI GAGCTC 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 437
EcoRI GAATTC 1 cut(s) 425
EcoT38I GRGCYC 1 cut(s) 74
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 1 cut(s) 178
FaiI YATR 2 cut(s) 176, 434
FaqI GGGAC 1 cut(s) 266
FatI CATG 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 498
FokI GGATG 1 cut(s) 129
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 498
FspBI CTAG 1 cut(s) 155
GluI GCNGC 1 cut(s) 498
HaeIII GGCC 2 cut(s) 89, 615
HapII CCGG 3 cut(s) 126, 289, 323
Hin1II CATG 1 cut(s) 178
HpaII CCGG 3 cut(s) 126, 289, 323
HphI GGTGA 4 cut(s) 143, 247, 288, 386
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 3 cut(s) 69, 198, 466
Hpy188III TCNNGA 1 cut(s) 400
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 3 cut(s) 371, 450, 520
HpyCH4III ACNGT 2 cut(s) 49, 538
HpyCH4V TGCA 3 cut(s) 229, 390, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 387
HpyF3I CTNAG 1 cut(s) 352
Hsp92II CATG 1 cut(s) 178
Kzo9I GATC 3 cut(s) 177, 291, 529
LmnI GCTCC 2 cut(s) 69, 196
LweI GCATC 1 cut(s) 228
MaeI CTAG 1 cut(s) 155
MaeIII GTNAC 2 cut(s) 182, 340
MalI GATC 3 cut(s) 179, 293, 531
MboI GATC 3 cut(s) 177, 291, 529
MboII GAAGA 3 cut(s) 131, 140, 159
MflI RGATCY 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 4 cut(s) 112, 404, 425, 637
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 9 cut(s) 52, 156, 204, 241, 407, 454, 517, 598, 626
MseI TTAA 4 cut(s) 206, 393, 636, 640
MspI CCGG 3 cut(s) 126, 289, 323
MwoI GCNNNNNNNGC 1 cut(s) 387
NdeII GATC 3 cut(s) 177, 291, 529
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 4 cut(s) 99, 267, 282, 438
PacI TTAATTAA 1 cut(s) 640
PinAI ACCGGT 1 cut(s) 322
PkrI GCNGC 1 cut(s) 499
PpuMI RGGWCCY 1 cut(s) 437
Psp124BI GAGCTC 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 437
PspN4I GGNNCC 4 cut(s) 99, 267, 282, 438
PspPI GGNCC 5 cut(s) 88, 280, 437, 581, 613
PspPPI RGGWCCY 1 cut(s) 437
PsrI GAACNNNNNNTAC 2 cut(s) 348, 380
PsuI RGATCY 1 cut(s) 291
RsaI GTAC 2 cut(s) 257, 535
RsaNI GTAC 2 cut(s) 256, 534
SacI GAGCTC 1 cut(s) 74
SaqAI TTAA 4 cut(s) 206, 393, 636, 640
SatI GCNGC 1 cut(s) 498
Sau3AI GATC 3 cut(s) 177, 291, 529
Sau96I GGNCC 5 cut(s) 88, 280, 437, 581, 613
SduI GDGCHC 1 cut(s) 74
SetI ASST 6 cut(s) 74, 156, 261, 301, 399, 609
SfaNI GCATC 1 cut(s) 228
SinI GGWCC 3 cut(s) 280, 437, 581
Sse9I AATT 4 cut(s) 112, 404, 425, 637
SsiI CCGC 1 cut(s) 497
SspMI CTAG 1 cut(s) 155
SstI GAGCTC 1 cut(s) 74
TaaI ACNGT 2 cut(s) 49, 538
TaqI TCGA 3 cut(s) 423, 429, 455
TaqII GACCGA 1 cut(s) 569
TasI AATT 4 cut(s) 112, 404, 425, 637
TauI GCSGC 1 cut(s) 500
Tru1I TTAA 4 cut(s) 206, 393, 636, 640
Tru9I TTAA 4 cut(s) 206, 393, 636, 640
TscAI CASTG 1 cut(s) 236
TspDTI ATGAA 2 cut(s) 131, 298
TspGWI ACGGA 2 cut(s) 19, 69
TspRI CASTG 1 cut(s) 236
VpaK11BI GGWCC 3 cut(s) 280, 437, 581
XapI RAATTY 2 cut(s) 404, 425
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.