Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009740.1

Orthogroup ID

OG0005182

Physical Location & Seq

Genomic Coordinates Reverse (-)

4026 .. 5603

Gene Structure 1578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009740.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

atgtatggtagcagtaactttggtggatataacttctgtgggagtgacaattattatggatatgactttgtagcaattattgactggttccggtgtgatatatcagaacttggcattgtggctactcaaaatgcatggttgaatgataattatctttgtttacctcttgagaacaaaccggagaaagtaactttgtttcttgctgataagttggaaaaaatgggacataaaaggctacttaaaaaatctgctgttgttatgtttgtcagcaaggatggaaaatatcttgctctgggaagcaaagatggagatatatttttggttgaagttaagaaaattgagcatgaattgattgagctccgaaatcacatttcgtctcaaggagttgtgaacttgcttgaagaggtatttgaacttgcctttgcaaaatttggtcccagtgttattttattgactggttttcatggagttggaaggacaatagtgttcaatacattgaagatggcatttctgttgtgtcaggttgcactaacatgcatgggaaagttacaagataaacgacctttattctctggtgtctttagttatgataattatgcatgttttgatattgtcatggcaaaacaattaccaaacccagcttgtcattcaatcttgtttaggctcatattggcaattcttgctatggtacattggctcgctaattacgatgaaggacctaattggcaaggagcaaagagaaccagtacatggtttatcaaaatgcatggcttccatcatattagcactaacaaagtgctccagcaacacacttgtctgcaatgtttgcaactagttctgaggaaactcattcaggcagaaactcaagtcagtacttctattctgcgtcaatcacatagcaatagttctcatcttgtgtggccattcattgttgtagagagtgagtttttagctaaaatcccaaaagcacaagcactatgtgcctacaatatgaagtatctcagggaattgactcaagtctttaacattaagggtcaaatagaatttgtggactatggagtgaattttctctcatctgatattgtgcttggagaacatttatttgttgttcttcaagatgggttgcgccttcttagagccattcaacttttgaaggatgactgctatatcctaatgaaaatggttgttccatcagatacaaacaaaaagcacctgccaagttgtggcagttctctgcattatcttgaggctgttattgttttacatgatgatggaaatatgattgtggaagatgattttgctgatggagacaaggaactttctatttccttggttcagaatctgtttgttcatttacaggtacatctattggtcaagaaaacaatattagctaatgaaatatgcaaaattcagggaattatggattgctccattaatgctgattctcctccaatattttcatgctttggtgagctagctttgaccatgattttgtactccttatggttgattagagcctggcacaaaagcatgggttacttgccatttgaagactctgattatccaacaatgccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm CH IQ

Protein Analysis

525

Amino Acids

59.52

Weight (kDa)

6.34

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005182)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14300 FvH4_3g19610 FvH4_4g30860 FvH4_5g18841
rosa_chinensis	RchiOBHm_Chr1g0357401 RchiOBHm_Chr2g0112171 RchiOBHm_Chr2g0125391 RchiOBHm_Chr5g0054711 RchiOBHm_Chr5g0064471 RchiOBHm_Chr6g0271351 RchiOBHm_Chr7g0191401 RchiOBHm_Chr7g0214711
rosa_laevigata	RLG00000017451 RLG00000022476
rosa_multiflora	Rmu_sc0000331.1_g000014 Rmu_sc0000795.1_g000108 Rmu_sc0004866.1_g000026 Rmu_sc0005111.1_g000002 Rmu_sc0006642.1_g000002 Rmu_sc0006695.1_g000080 Rmu_sc0009740.1_g000002 Rmu_sc0021244.1_g000001 Rmu_sc0042233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019300 Rroxscaffold_2G00085360
rosa_rugosa	Rorug04G0054100 Rorug05G0017000 Rorug06G0337100 Rorug07G0115500
rosa_samantha	Rh6AG133600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1221
Acc36I	ACCTGC	1 cut(s)	1221
AccB7I	CCANNNNNTGG	2 cut(s)	750, 1223
AcoI	YGGCCR	1 cut(s)	920
AcsI	RAATTY	4 cut(s)	428, 1043, 1063, 1407
AdeI	CACNNNGTG	1 cut(s)	980
AfaI	GTAC	5 cut(s)	690, 748, 874, 1362, 1496
AfiI	CCNNNNNNNGG	2 cut(s)	750, 1223
AhlI	ACTAGT	1 cut(s)	832
AjnI	CCWGG	1 cut(s)	1517
AluBI	AGCT	6 cut(s)	358, 641, 953, 1391, 1474, 1478
AluI	AGCT	6 cut(s)	358, 641, 953, 1391, 1474, 1478
Alw21I	GWGCWC	2 cut(s)	360, 801
Alw26I	GTCTC	2 cut(s)	381, 1302
AlwNI	CAGNNNCTG	1 cut(s)	1342
AoxI	GGCC	1 cut(s)	920
ApoI	RAATTY	4 cut(s)	428, 1043, 1063, 1407
ArsI	GACNNNNNNTTYG	2 cut(s)	1474, 1506
AseI	ATTAAT	1 cut(s)	1434
AspLEI	GCGC	1 cut(s)	1128
AspS9I	GGNCC	2 cut(s)	434, 716
AsuHPI	GGTGA	1 cut(s)	1481
AsuNHI	GCTAGC	1 cut(s)	1474
AvaII	GGWCC	2 cut(s)	434, 716
BalI	TGGCCA	1 cut(s)	922
BanII	GRGCYC	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	1557
Bbv12I	GWGCWC	2 cut(s)	360, 801
BccI	CCATC	8 cut(s)	269, 299, 496, 783, 1112, 1198, 1265, 1298
BciT130I	CCWGG	1 cut(s)	1519
BcoDI	GTCTC	2 cut(s)	381, 1302
BcuI	ACTAGT	1 cut(s)	832
BfaI	CTAG	3 cut(s)	833, 1475, 1576
BfuAI	ACCTGC	1 cut(s)	1221
BmcAI	AGTACT	1 cut(s)	874
Bme1390I	CCNGG	1 cut(s)	1519
Bme18I	GGWCC	2 cut(s)	434, 716
BmgT120I	GGNCC	2 cut(s)	434, 716
BmiI	GGNNCC	2 cut(s)	89, 436
BmrFI	CCNGG	1 cut(s)	1519
BmrI	ACTGGG	1 cut(s)	432
BmtI	GCTAGC	1 cut(s)	1478
BmuI	ACTGGG	1 cut(s)	432
BoxI	GACNNNNGTC	1 cut(s)	1016
BpiI	GAAGAC	1 cut(s)	1557
BpmI	CTGGAG	1 cut(s)	785
BpuEI	CTTGAG	5 cut(s)	188, 363, 849, 999, 1265
BsaBI	GATNNNNATC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	1329
BsaWI	WCCGGW	2 cut(s)	90, 178
Bsc4I	CCNNNNNNNGG	2 cut(s)	750, 1223
Bse1I	ACTGG	4 cut(s)	89, 438, 460, 744
Bse3DI	GCAATG	1 cut(s)	827
Bse8I	GATNNNNATC	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	1519
BseDI	CCNNGG	1 cut(s)	1329
BseGI	GGATG	2 cut(s)	280, 1162
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	750, 1223
BseMI	GCAATG	1 cut(s)	827
BseMII	CTCAG	2 cut(s)	830, 1015
BseNI	ACTGG	4 cut(s)	89, 438, 460, 744
BseRI	GAGGAG	1 cut(s)	1437
BseYI	CCCAGC	1 cut(s)	637
BshFI	GGCC	1 cut(s)	922
BsiHKAI	GWGCWC	2 cut(s)	360, 801
BsiSI	CCGG	2 cut(s)	91, 179
BslFI	GGGAC	2 cut(s)	237, 420
BslI	CCNNNNNNNGG	2 cut(s)	750, 1223
BsmAI	GTCTC	2 cut(s)	381, 1302
BsmBI	CGTCTC	1 cut(s)	381
BsmFI	GGGAC	2 cut(s)	237, 420
BsnI	GGCC	1 cut(s)	922
Bsp1286I	GDGCHC	2 cut(s)	360, 801
BspANI	GGCC	1 cut(s)	922
BspCNI	CTCAG	2 cut(s)	831, 1014
BspLI	GGNNCC	2 cut(s)	89, 436
BspMI	ACCTGC	1 cut(s)	1221
BspOI	GCTAGC	1 cut(s)	1478
BsrDI	GCAATG	1 cut(s)	827
BsrI	ACTGG	4 cut(s)	89, 438, 460, 744
BssECI	CCNNGG	1 cut(s)	1329
BssT1I	CCWWGG	1 cut(s)	1329
Bst2UI	CCWGG	1 cut(s)	1519
Bst6I	CTCTTC	1 cut(s)	396
BstAPI	GCANNNNNTGC	3 cut(s)	680, 826, 980
BstC8I	GCNNGC	2 cut(s)	699, 1476
BstDEI	CTNAG	3 cut(s)	839, 1001, 1133
BstF5I	GGATG	2 cut(s)	280, 1162
BstHHI	GCGC	1 cut(s)	1128
BstMAI	GTCTC	2 cut(s)	381, 1302
BstMWI	GCNNNNNNNGC	3 cut(s)	680, 826, 980
BstNI	CCWGG	1 cut(s)	1519
BstNSI	RCATGY	2 cut(s)	537, 603
BstPAI	GACNNNNGTC	1 cut(s)	1016
BstSCI	CCNGG	1 cut(s)	1517
BstV2I	GAAGAC	1 cut(s)	1557
BsuRI	GGCC	1 cut(s)	922
BtsCI	GGATG	2 cut(s)	280, 1162
BtsIMutI	CAGTG	1 cut(s)	445
BveI	ACCTGC	1 cut(s)	1221
Cac8I	GCNNGC	2 cut(s)	699, 1476
CaiI	CAGNNNCTG	1 cut(s)	1342
CfoI	GCGC	1 cut(s)	1128
Cfr13I	GGNCC	2 cut(s)	434, 716
CseI	GACGC	1 cut(s)	875
Csp6I	GTAC	5 cut(s)	689, 747, 873, 1361, 1495
CviQI	GTAC	5 cut(s)	689, 747, 873, 1361, 1495
DdeI	CTNAG	3 cut(s)	839, 1001, 1133
DraIII	CACNNNGTG	1 cut(s)	980
EaeI	YGGCCR	1 cut(s)	920
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Ecl136II	GAGCTC	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	1329
Eco24I	GRGCYC	1 cut(s)	360
Eco47I	GGWCC	2 cut(s)	434, 716
Eco53kI	GAGCTC	1 cut(s)	358
EcoICRI	GAGCTC	1 cut(s)	358
EcoO109I	RGGNCCY	1 cut(s)	716
EcoRII	CCWGG	1 cut(s)	1517
EcoT14I	CCWWGG	1 cut(s)	1329
EcoT22I	ATGCAT	4 cut(s)	136, 539, 601, 768
EcoT38I	GRGCYC	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	1329
Esp3I	CGTCTC	1 cut(s)	381
FaqI	GGGAC	2 cut(s)	237, 420
FokI	GGATG	2 cut(s)	287, 1169
FriOI	GRGCYC	1 cut(s)	360
FspBI	CTAG	3 cut(s)	833, 1475, 1576
GlaI	GCGC	1 cut(s)	1127
GsaI	CCCAGC	1 cut(s)	641
GsuI	CTGGAG	1 cut(s)	785
HaeIII	GGCC	1 cut(s)	922
HapII	CCGG	2 cut(s)	91, 179
HgaI	GACGC	1 cut(s)	875
HhaI	GCGC	1 cut(s)	1128
Hin6I	GCGC	1 cut(s)	1126
HinP1I	GCGC	1 cut(s)	1126
HinfI	GANTC	4 cut(s)	1012, 1339, 1442, 1553
HpaII	CCGG	2 cut(s)	91, 179
HphI	GGTGA	1 cut(s)	1481
Hpy166II	GTNNAC	3 cut(s)	161, 391, 1051
Hpy188I	TCNGA	7 cut(s)	106, 362, 840, 1078, 1195, 1338, 1558
Hpy188III	TCNNGA	4 cut(s)	167, 1115, 1244, 1375
Hpy8I	GTNNAC	3 cut(s)	161, 391, 1051
HpyAV	CCTTC	4 cut(s)	468, 707, 1139, 1147
HpyF10VI	GCNNNNNNNGC	3 cut(s)	680, 826, 980
HpyF3I	CTNAG	3 cut(s)	839, 1001, 1133
HspAI	GCGC	1 cut(s)	1126
LmnI	GCTCC	4 cut(s)	363, 731, 804, 1433
MaeI	CTAG	3 cut(s)	833, 1475, 1576
MaeIII	GTNAC	5 cut(s)	14, 44, 187, 546, 1535
MboII	GAAGA	5 cut(s)	413, 511, 1103, 1301, 1562
MhlI	GDGCHC	2 cut(s)	360, 801
MlsI	TGGCCA	1 cut(s)	922
MluNI	TGGCCA	1 cut(s)	922
MlyI	GAGTC	2 cut(s)	1006, 1547
MmeI	TCCRAC	2 cut(s)	192, 451
MnlI	CCTC	5 cut(s)	174, 397, 834, 1240, 1458
Mox20I	TGGCCA	1 cut(s)	922
Mph1103I	ATGCAT	4 cut(s)	136, 539, 601, 768
MscI	TGGCCA	1 cut(s)	922
MseI	TTAA	5 cut(s)	240, 330, 1023, 1029, 1434
MslI	CAYNNNNRTG	2 cut(s)	532, 1269
Msp20I	TGGCCA	1 cut(s)	922
MspI	CCGG	2 cut(s)	91, 179
MspR9I	CCNGG	1 cut(s)	1519
MvaI	CCWGG	1 cut(s)	1519
MwoI	GCNNNNNNNGC	3 cut(s)	680, 826, 980
NheI	GCTAGC	1 cut(s)	1474
NlaIV	GGNNCC	2 cut(s)	89, 436
NmuCI	GTSAC	1 cut(s)	44
NsiI	ATGCAT	4 cut(s)	136, 539, 601, 768
NspI	RCATGY	2 cut(s)	537, 603
PaqCI	CACCTGC	1 cut(s)	1221
PcsI	WCGNNNNNNNCGW	1 cut(s)	705
PfeI	GAWTC	2 cut(s)	1339, 1442
PflMI	CCANNNNNTGG	2 cut(s)	750, 1223
PleI	GAGTC	2 cut(s)	1006, 1547
PpsI	GAGTC	2 cut(s)	1006, 1547
PpuMI	RGGWCCY	1 cut(s)	716
PshAI	GACNNNNGTC	1 cut(s)	1016
PshBI	ATTAAT	1 cut(s)	1434
Psp124BI	GAGCTC	1 cut(s)	360
Psp5II	RGGWCCY	1 cut(s)	716
Psp6I	CCWGG	1 cut(s)	1517
PspFI	CCCAGC	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	1517
PspN4I	GGNNCC	2 cut(s)	89, 436
PspPI	GGNCC	2 cut(s)	434, 716
PspPPI	RGGWCCY	1 cut(s)	716
PstNI	CAGNNNCTG	1 cut(s)	1342
RsaI	GTAC	5 cut(s)	690, 748, 874, 1362, 1496
RsaNI	GTAC	5 cut(s)	689, 747, 873, 1361, 1495
RseI	CAYNNNNRTG	2 cut(s)	532, 1269
SacI	GAGCTC	1 cut(s)	360
SaqAI	TTAA	5 cut(s)	240, 330, 1023, 1029, 1434
Sau96I	GGNCC	2 cut(s)	434, 716
ScaI	AGTACT	1 cut(s)	874
SchI	GAGTC	2 cut(s)	1006, 1547
ScrFI	CCNGG	1 cut(s)	1519
SduI	GDGCHC	2 cut(s)	360, 801
SinI	GGWCC	2 cut(s)	434, 716
SmiMI	CAYNNNNRTG	2 cut(s)	532, 1269
SmlI	CTYRAG	5 cut(s)	167, 378, 864, 1014, 1244
SmoI	CTYRAG	5 cut(s)	167, 378, 864, 1014, 1244
SpeI	ACTAGT	1 cut(s)	832
SspI	AATATT	2 cut(s)	1386, 1455
SspMI	CTAG	3 cut(s)	833, 1475, 1576
SstI	GAGCTC	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	1517
StyI	CCWWGG	1 cut(s)	1329
TatI	WGTACW	3 cut(s)	746, 872, 1494
TfiI	GAWTC	2 cut(s)	1339, 1442
Tru1I	TTAA	5 cut(s)	240, 330, 1023, 1029, 1434
Tru9I	TTAA	5 cut(s)	240, 330, 1023, 1029, 1434
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	9 cut(s)	360, 452, 726, 916, 1007, 1190, 1340, 1410, 1449
TspRI	CASTG	1 cut(s)	445
Van91I	CCANNNNNTGG	2 cut(s)	750, 1223
VpaK11BI	GGWCC	2 cut(s)	434, 716
VspI	ATTAAT	1 cut(s)	1434
XapI	RAATTY	4 cut(s)	428, 1043, 1063, 1407
XceI	RCATGY	2 cut(s)	537, 603
XspI	CTAG	3 cut(s)	833, 1475, 1576
ZrmI	AGTACT	1 cut(s)	874
Zsp2I	ATGCAT	4 cut(s)	136, 539, 601, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.