Rh2AG132200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011581
Physical Location & Seq
Reverse (-)
11945320 .. 11946282
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG132200.1

Sequence Viewer

Length: 411 bp
ATGGGATTTGGTGTGTTCACTGGTTGCATTCCTCATGGTGTCTCTGTATTACGCAATGGATCGGTTTGTGGCGGTGTTAGCACCAACTATTTCCTTCTCCGTTGGGTCTGCAATTGGGTTGAAGCTGTGGTGGTGCTCCGATGTCAGATGAACTGGGTGTATTCCAATTTTCCGATGGCAAACAGTACTGTGACGTCTCTGGGTCACTTAACTAGTCGACAGGTGGCTGGTTATGTTTATGCTGCTGTCCTTTCCTCCCTTGGAGGGTTTGCTACTTGGATGGATAATGATGGGTTGTTCCCACTTGTTTTGTTTATCTTCTGTTTGTTTGCGTTTTCCCCACACTGTGGGCTTTGTAAGTGTGTTTGTGTTTGTGTTTGTGTTTGTGTGTGTAAAATTTTGTTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.83

Weight (kDa)

8.25

Isoelectric Point (pI)

21.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 197
AccB7I CCANNNNNTGG 1 cut(s) 347
AccI GTMKAC 1 cut(s) 217
AciI CCGC 1 cut(s) 72
AclWI GGATC 1 cut(s) 67
AcsI RAATTY 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 194
AdeI CACNNNGTG 1 cut(s) 347
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 2 cut(s) 264, 347
AgsI TTSAA 1 cut(s) 122
AhlI ACTAGT 1 cut(s) 212
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 2 cut(s) 46, 201
AlwI GGATC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 229
BccI CCATC 3 cut(s) 169, 274, 284
BcoDI GTCTC 2 cut(s) 46, 201
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 1 cut(s) 213
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
BmcAI AGTACT 1 cut(s) 187
BmrI ACTGGG 1 cut(s) 163
BmuI ACTGGG 1 cut(s) 163
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 2 cut(s) 264, 347
Bse1I ACTGG 2 cut(s) 25, 158
Bse3DI GCAATG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 2 cut(s) 264, 347
BseMI GCAATG 1 cut(s) 61
BseNI ACTGG 2 cut(s) 25, 158
BseXI GCAGC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 138
BslI CCNNNNNNNGG 2 cut(s) 264, 347
BsmAI GTCTC 2 cut(s) 46, 201
BsmBI CGTCTC 1 cut(s) 201
BsmI GAATGC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 1 cut(s) 59
BspACI CCGC 1 cut(s) 72
BspPI GGATC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 61
BsrI ACTGG 2 cut(s) 25, 158
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 1 cut(s) 59
BssNI GRCGYC 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 259
Bst4CI ACNGT 3 cut(s) 185, 190, 347
BstACI GRCGYC 1 cut(s) 194
BstF5I GGATG 1 cut(s) 285
BstKTI GATC 1 cut(s) 62
BstMAI GTCTC 2 cut(s) 46, 201
BstMBI GATC 1 cut(s) 59
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 229
BtsCI GGATG 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 18, 343
Csp6I GTAC 1 cut(s) 186
CspCI CAANNNNNGTGG 2 cut(s) 291, 326
CviAII CATG 1 cut(s) 35
CviJI RGCY 3 cut(s) 125, 227, 352
CviKI_1 RGCY 3 cut(s) 125, 227, 352
CviQI GTAC 1 cut(s) 186
DpnI GATC 1 cut(s) 61
DpnII GATC 1 cut(s) 59
DraIII CACNNNGTG 1 cut(s) 347
Eco130I CCWWGG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
Esp3I CGTCTC 1 cut(s) 201
FaeI CATG 1 cut(s) 38
FaiI YATR 3 cut(s) 36, 234, 240
FatI CATG 1 cut(s) 34
FblI GTMKAC 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 1 cut(s) 213
GluI GCNGC 1 cut(s) 243
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 1 cut(s) 38
HincII GTYRAC 1 cut(s) 218
HindII GTYRAC 1 cut(s) 218
Hpy166II GTNNAC 2 cut(s) 18, 218
Hpy188I TCNGA 3 cut(s) 140, 147, 174
Hpy8I GTNNAC 2 cut(s) 18, 218
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 3 cut(s) 185, 190, 347
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 2 cut(s) 27, 111
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 194
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 1 cut(s) 38
Kzo9I GATC 1 cut(s) 59
LmnI GCTCC 1 cut(s) 141
LpnPI CCDG 5 cut(s) 6, 139, 185, 206, 213
Lsp1109I GCAGC 1 cut(s) 229
MaeI CTAG 1 cut(s) 213
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 2 cut(s) 190, 203
MalI GATC 1 cut(s) 61
MboI GATC 1 cut(s) 59
MboII GAAGA 1 cut(s) 310
MfeI CAATTG 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 3 cut(s) 112, 166, 396
MnlI CCTC 3 cut(s) 42, 257, 265
MseI TTAA 1 cut(s) 209
MunI CAATTG 1 cut(s) 112
Mva1269I GAATGC 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 78
NdeII GATC 1 cut(s) 59
NlaIII CATG 1 cut(s) 38
NmuCI GTSAC 2 cut(s) 190, 203
PctI GAATGC 1 cut(s) 27
PflMI CCANNNNNTGG 1 cut(s) 347
PkrI GCNGC 1 cut(s) 244
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SalI GTCGAC 1 cut(s) 216
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 1 cut(s) 59
ScaI AGTACT 1 cut(s) 187
SduI GDGCHC 1 cut(s) 138
SetI ASST 3 cut(s) 127, 197, 225
SpeI ACTAGT 1 cut(s) 212
Sse9I AATT 3 cut(s) 112, 166, 396
SsiI CCGC 1 cut(s) 72
SspMI CTAG 1 cut(s) 213
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 3 cut(s) 185, 190, 347
TaiI ACGT 1 cut(s) 197
TaqI TCGA 1 cut(s) 217
TasI AATT 3 cut(s) 112, 166, 396
TatI WGTACW 1 cut(s) 185
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 2 cut(s) 25, 350
TseFI GTSAC 2 cut(s) 190, 203
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 2 cut(s) 190, 203
TspDTI ATGAA 1 cut(s) 164
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 2 cut(s) 25, 350
Van91I CCANNNNNTGG 1 cut(s) 347
XapI RAATTY 1 cut(s) 396
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 217
XspI CTAG 1 cut(s) 213
ZraI GACGTC 1 cut(s) 195
ZrmI AGTACT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.