RLG00000036824
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011581
Physical Location & Seq
Reverse (-)
85244848 .. 85245588
741 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036824

Sequence Viewer

Length: 417 bp
ATGGGTGTCAGGTTTCTGGTGACGGTCTGGATTGCTGTCAGAATTGGAATTCTCTTTCAAATTCCGAGCACCGCCGCCACGCGAAGGAGAAGCAAGAAGAAGAGGATCGTCGCAATTGCAATATCCGTCGGCGATGACGAGGTTGTCGTCTCGGTCAACTACATTTGTGATGCCCCGCCTCTGGAAGGACCTTCCGGCCAAGCTCCACCACAAGGTCTACAGATTCTCAATGTCGTCGGCGTTTACCTCGATCTCTCTTCGAACGCTTTCTCCGGCGAGATTCCGAGGAGCATCACCAACCTGACTCAGCTTCTGCTCATCAACATGTCGTACAATCAGTTTTCCAGTCAGGTTCCGGTGAGCTTTGGGGCTGGACCACAACCTCTTGGAATGAACACTGCCGTCAGTGACAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048731 GO:0048856 GO:0071944 GO:0090696 GO:0099402
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

139

Amino Acids

14.71

Weight (kDa)

8.98

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 217
AccII CGCG 1 cut(s) 82
AciI CCGC 3 cut(s) 72, 75, 176
AclWI GGATC 1 cut(s) 113
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 2 cut(s) 48, 60
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 4 cut(s) 84, 181, 185, 212
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 1 cut(s) 59
AloI GAACNNNNNNTCC 2 cut(s) 254, 286
AluBI AGCT 4 cut(s) 203, 310, 363, 414
AluI AGCT 4 cut(s) 203, 310, 363, 414
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 154
AlwI GGATC 1 cut(s) 113
AlwNI CAGNNNCTG 1 cut(s) 313
AoxI GGCC 1 cut(s) 196
ApoI RAATTY 2 cut(s) 48, 60
Asp700I GAANNNNTTC 1 cut(s) 266
AspS9I GGNCC 2 cut(s) 188, 374
AsuHPI GGTGA 3 cut(s) 31, 286, 370
AsuII TTCGAA 1 cut(s) 260
AvaII GGWCC 2 cut(s) 188, 374
Bbv12I GWGCWC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 386
BcoDI GTCTC 1 cut(s) 154
BfmI CTRYAG 1 cut(s) 218
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme18I GGWCC 2 cut(s) 188, 374
BmgT120I GGNCC 2 cut(s) 188, 374
BmiI GGNNCC 1 cut(s) 354
BmsI GCATC 2 cut(s) 160, 300
Bpu14I TTCGAA 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 284
BsaWI WCCGGW 1 cut(s) 355
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 181, 185, 212
Bse1I ACTGG 1 cut(s) 345
BseDI CCNNGG 1 cut(s) 284
BseLI CCNNNNNNNGG 4 cut(s) 84, 181, 185, 212
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 345
BseRI GAGGAG 1 cut(s) 301
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 71
BsiSI CCGG 3 cut(s) 195, 273, 356
BslI CCNNNNNNNGG 4 cut(s) 84, 181, 185, 212
BsmAI GTCTC 1 cut(s) 154
BsmBI CGTCTC 1 cut(s) 154
BsnI GGCC 1 cut(s) 198
Bsp119I TTCGAA 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 105, 250
BspACI CCGC 3 cut(s) 72, 75, 176
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 1 cut(s) 319
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 354
BspPI GGATC 1 cut(s) 113
BspT104I TTCGAA 1 cut(s) 260
BsrI ACTGG 1 cut(s) 345
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 2 cut(s) 105, 250
Bst4CI ACNGT 1 cut(s) 25
Bst6I CTCTTC 2 cut(s) 95, 262
BstBI TTCGAA 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 306
BstENI CCTNNNNNAGG 1 cut(s) 183
BstFNI CGCG 1 cut(s) 82
BstKTI GATC 2 cut(s) 108, 253
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 2 cut(s) 105, 250
BstNSI RCATGY 1 cut(s) 328
BstSFI CTRYAG 1 cut(s) 218
BstUI CGCG 1 cut(s) 82
BsuRI GGCC 1 cut(s) 198
BtgZI GCGATG 1 cut(s) 147
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 2 cut(s) 396, 412
CaiI CAGNNNCTG 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 188, 374
Csp6I GTAC 1 cut(s) 331
CviAII CATG 1 cut(s) 325
CviJI RGCY 6 cut(s) 198, 203, 310, 363, 371, 414
CviKI_1 RGCY 6 cut(s) 198, 203, 310, 363, 371, 414
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 1 cut(s) 306
DpnI GATC 2 cut(s) 107, 252
DpnII GATC 2 cut(s) 105, 250
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 196
Eam1104I CTCTTC 2 cut(s) 95, 262
EarI CTCTTC 2 cut(s) 95, 262
Eco47I GGWCC 2 cut(s) 188, 374
EcoNI CCTNNNNNAGG 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 188
EcoRI GAATTC 1 cut(s) 48
Esp3I CGTCTC 1 cut(s) 154
FaeI CATG 1 cut(s) 328
FaiI YATR 1 cut(s) 326
FatI CATG 1 cut(s) 324
FauI CCCGC 1 cut(s) 183
FblI GTMKAC 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
HaeIII GGCC 1 cut(s) 198
HapII CCGG 3 cut(s) 195, 273, 356
Hin1II CATG 1 cut(s) 328
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 3 cut(s) 223, 280, 304
HpaII CCGG 3 cut(s) 195, 273, 356
HphI GGTGA 3 cut(s) 31, 286, 370
Hpy166II GTNNAC 3 cut(s) 157, 218, 244
Hpy188I TCNGA 3 cut(s) 41, 66, 285
Hpy188III TCNNGA 2 cut(s) 28, 182
Hpy8I GTNNAC 3 cut(s) 157, 218, 244
Hpy99I CGWCG 3 cut(s) 113, 131, 239
HpyAV CCTTC 3 cut(s) 78, 179, 201
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 306
Hsp92II CATG 1 cut(s) 328
Kzo9I GATC 2 cut(s) 105, 250
LmnI GCTCC 2 cut(s) 208, 288
LweI GCATC 2 cut(s) 160, 300
MaeIII GTNAC 2 cut(s) 19, 407
MalI GATC 2 cut(s) 107, 252
MboI GATC 2 cut(s) 105, 250
MboII GAAGA 3 cut(s) 109, 112, 249
MfeI CAATTG 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 4 cut(s) 42, 48, 60, 114
MlyI GAGTC 1 cut(s) 298
MnlI CCTC 6 cut(s) 96, 133, 189, 257, 279, 393
MroXI GAANNNNTTC 1 cut(s) 266
MslI CAYNNNNRTG 1 cut(s) 323
MspI CCGG 3 cut(s) 195, 273, 356
MunI CAATTG 1 cut(s) 114
MvnI CGCG 1 cut(s) 82
NdeII GATC 2 cut(s) 105, 250
NlaIII CATG 1 cut(s) 328
NlaIV GGNNCC 1 cut(s) 354
NmuCI GTSAC 2 cut(s) 19, 407
NspI RCATGY 1 cut(s) 328
NspV TTCGAA 1 cut(s) 260
PciI ACATGT 1 cut(s) 324
PcsI WCGNNNNNNNCGW 2 cut(s) 135, 144
PdmI GAANNNNTTC 1 cut(s) 266
PfeI GAWTC 2 cut(s) 223, 280
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PpuMI RGGWCCY 1 cut(s) 188
PscI ACATGT 1 cut(s) 324
Psp5II RGGWCCY 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 2 cut(s) 188, 374
PspPPI RGGWCCY 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 313
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
RseI CAYNNNNRTG 1 cut(s) 323
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 105, 250
Sau96I GGNCC 2 cut(s) 188, 374
SchI GAGTC 1 cut(s) 298
SduI GDGCHC 1 cut(s) 71
SfaNI GCATC 2 cut(s) 160, 300
SfcI CTRYAG 1 cut(s) 218
SfuI TTCGAA 1 cut(s) 260
SinI GGWCC 2 cut(s) 188, 374
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 4 cut(s) 42, 48, 60, 114
SsiI CCGC 3 cut(s) 72, 75, 176
TaaI ACNGT 1 cut(s) 25
TaqI TCGA 2 cut(s) 249, 260
TaqII GACCGA 1 cut(s) 142
TasI AATT 4 cut(s) 42, 48, 60, 114
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 2 cut(s) 223, 280
TscAI CASTG 2 cut(s) 403, 412
TseFI GTSAC 2 cut(s) 19, 407
Tsp45I GTSAC 2 cut(s) 19, 407
TspDTI ATGAA 1 cut(s) 407
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 2 cut(s) 403, 412
VpaK11BI GGWCC 2 cut(s) 188, 374
XagI CCTNNNNNAGG 1 cut(s) 183
XapI RAATTY 2 cut(s) 48, 60
XceI RCATGY 1 cut(s) 328
XmiI GTMKAC 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.