Rh6DG131400

mitochondrial fission

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0011581
Physical Location & Seq
Forward (+)
18712841 .. 18731201
18361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG131400.1

Sequence Viewer

Length: 654 bp
ATGGAGAACCTGATCTCGCTGGTCAACAAAATTCAAAGAGCTTGTACAGCTCTTGGTGACCACAGCGAAACCCGCGCATTACAGACTCTTTGGGACTCGCTTCCCTCCATCGCTGCCGTCAGTGGCCAGTGTTCCAGCCTCATAAGATTGATGAACGCAACAGAGAATATGCGGAATTTCTCCACCTTCCAAGGAAAAGGTTCACAGATTTCGGTTCATTATGTTGCAAAGTGGAAGGGTATCACTTTCATGACAAGTAGACAAGGACTTGGTGTTGGTGGAGGAACGTTTGTGGCGGTGTTAGCACCAGCTATTTCCTTCTCCGTTGGGTCTGCAATTAGGCTGAACTTGTGGTGGTGTTCCAATGTCGGGATGAACTTGGTGTATTCCAATTTTCCGATGGTAAACAGTACTGTGATGTCTCTGGGTCACTTAACTAGTCGACAGGTGGCTGGTTATGTTTATGCTGCTGTCCTTTCCTCCCTTGGAGGGTTTGCTACTTGGATGGATAATGATGGGTTGTTCCCACTTGAGGTGTCTGCCACCAATCAGATATGCTGGTATGGTATTTATTCTGCAACCAAAAACTTGGCATGTGGAACAACGATCAAACCTCCCAAACAGGTAGAAGTTTTGCTAGAGTCCTGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

23.39

Weight (kDa)

8.78

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 259, 442
AccII CGCG 1 cut(s) 75
AciI CCGC 3 cut(s) 73, 172, 296
AclI AACGTT 1 cut(s) 287
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 2 cut(s) 30, 175
AfaI GTAC 2 cut(s) 46, 412
AfiI CCNNNNNNNGG 3 cut(s) 369, 489, 532
AgsI TTSAA 1 cut(s) 35
AhlI ACTAGT 1 cut(s) 437
AluBI AGCT 3 cut(s) 41, 50, 311
AluI AGCT 3 cut(s) 41, 50, 311
Alw26I GTCTC 1 cut(s) 426
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 2 cut(s) 113, 467
ApoI RAATTY 2 cut(s) 30, 175
Asp700I GAANNNNTTC 1 cut(s) 199
AspLEI GCGC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 68
BalI TGGCCA 1 cut(s) 126
BbvI GCAGC 2 cut(s) 100, 454
BccI CCATC 4 cut(s) 116, 394, 499, 509
BceAI ACGGC 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 426
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 2 cut(s) 438, 638
BisI GCNGC 2 cut(s) 114, 468
BlsI GCNGC 2 cut(s) 115, 469
BmcAI AGTACT 1 cut(s) 412
BpuEI CTTGAG 1 cut(s) 551
BsaJI CCNNGG 2 cut(s) 190, 484
Bsc4I CCNNNNNNNGG 3 cut(s) 369, 489, 532
Bse1I ACTGG 1 cut(s) 127
BseDI CCNNGG 2 cut(s) 190, 484
BseGI GGATG 2 cut(s) 378, 510
BseLI CCNNNNNNNGG 3 cut(s) 369, 489, 532
BseNI ACTGG 1 cut(s) 127
BseXI GCAGC 2 cut(s) 100, 454
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 126
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 3 cut(s) 369, 489, 532
BsmAI GTCTC 1 cut(s) 426
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 1 cut(s) 126
Bsp1407I TGTACA 1 cut(s) 44
Bsp143I GATC 2 cut(s) 12, 606
BspACI CCGC 3 cut(s) 73, 172, 296
BspANI GGCC 1 cut(s) 126
BspFNI CGCG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 249
BsrGI TGTACA 1 cut(s) 44
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 190, 484
BssMI GATC 2 cut(s) 12, 606
BssT1I CCWWGG 2 cut(s) 190, 484
Bst4CI ACNGT 2 cut(s) 410, 415
BstAUI TGTACA 1 cut(s) 44
BstEII GGTNACC 1 cut(s) 56
BstF5I GGATG 2 cut(s) 378, 510
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 2 cut(s) 15, 609
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 2 cut(s) 12, 606
BstMWI GCNNNNNNNGC 3 cut(s) 47, 72, 302
BstNSI RCATGY 1 cut(s) 597
BstPI GGTNACC 1 cut(s) 56
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 100, 454
BstXI CCANNNNNNTGG 1 cut(s) 589
BsuRI GGCC 1 cut(s) 126
BtgZI GCGATG 1 cut(s) 94
BtsCI GGATG 2 cut(s) 378, 510
BtsIMutI CAGTG 2 cut(s) 127, 134
CciI TCATGA 1 cut(s) 249
CfoI GCGC 1 cut(s) 77
Csp6I GTAC 2 cut(s) 45, 411
CviAII CATG 2 cut(s) 250, 594
CviJI RGCY 7 cut(s) 41, 50, 126, 138, 311, 343, 452
CviKI_1 RGCY 7 cut(s) 41, 50, 126, 138, 311, 343, 452
CviQI GTAC 2 cut(s) 45, 411
DpnI GATC 2 cut(s) 14, 608
DpnII GATC 2 cut(s) 12, 606
EaeI YGGCCR 1 cut(s) 124
Eco130I CCWWGG 2 cut(s) 190, 484
Eco91I GGTNACC 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 56
EcoT14I CCWWGG 2 cut(s) 190, 484
ErhI CCWWGG 2 cut(s) 190, 484
FaeI CATG 2 cut(s) 253, 597
FaiI YATR 9 cut(s) 143, 170, 222, 251, 459, 465, 556, 564, 595
FaqI GGGAC 1 cut(s) 107
FatI CATG 2 cut(s) 249, 593
FauI CCCGC 1 cut(s) 80
FblI GTMKAC 2 cut(s) 259, 442
Fnu4HI GCNGC 2 cut(s) 114, 468
FokI GGATG 2 cut(s) 385, 517
Fsp4HI GCNGC 2 cut(s) 114, 468
FspBI CTAG 2 cut(s) 438, 638
GlaI GCGC 1 cut(s) 76
GluI GCNGC 2 cut(s) 114, 468
HaeIII GGCC 1 cut(s) 126
HhaI GCGC 1 cut(s) 77
Hin1II CATG 2 cut(s) 253, 597
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HincII GTYRAC 2 cut(s) 25, 443
HindII GTYRAC 2 cut(s) 25, 443
HinfI GANTC 3 cut(s) 85, 95, 641
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 5 cut(s) 25, 203, 260, 406, 443
Hpy188I TCNGA 2 cut(s) 399, 552
Hpy188III TCNNGA 3 cut(s) 250, 370, 651
Hpy8I GTNNAC 5 cut(s) 25, 203, 260, 406, 443
HpyAV CCTTC 3 cut(s) 196, 229, 328
HpyCH4III ACNGT 2 cut(s) 410, 415
HpyCH4IV ACGT 1 cut(s) 287
HpyCH4V TGCA 3 cut(s) 227, 335, 578
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 72, 302
HpySE526I ACGT 1 cut(s) 287
Hsp92II CATG 2 cut(s) 253, 597
HspAI GCGC 1 cut(s) 75
Kzo9I GATC 2 cut(s) 12, 606
Lsp1109I GCAGC 2 cut(s) 100, 454
MaeI CTAG 2 cut(s) 438, 638
MaeII ACGT 1 cut(s) 287
MaeIII GTNAC 2 cut(s) 56, 428
MalI GATC 2 cut(s) 14, 608
MboI GATC 2 cut(s) 12, 606
MlsI TGGCCA 1 cut(s) 126
MluCI AATT 4 cut(s) 30, 175, 336, 391
MluNI TGGCCA 1 cut(s) 126
MlyI GAGTC 3 cut(s) 79, 89, 650
MnlI CCTC 7 cut(s) 115, 149, 275, 482, 490, 526, 624
Mox20I TGGCCA 1 cut(s) 126
MroXI GAANNNNTTC 1 cut(s) 199
MscI TGGCCA 1 cut(s) 126
MseI TTAA 1 cut(s) 434
MslI CAYNNNNRTG 1 cut(s) 248
Msp20I TGGCCA 1 cut(s) 126
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 3 cut(s) 47, 72, 302
NdeII GATC 2 cut(s) 12, 606
NlaIII CATG 2 cut(s) 253, 597
NmuCI GTSAC 2 cut(s) 56, 428
NspI RCATGY 1 cut(s) 597
PagI TCATGA 1 cut(s) 249
PdmI GAANNNNTTC 1 cut(s) 199
PkrI GCNGC 2 cut(s) 115, 469
PleI GAGTC 3 cut(s) 79, 89, 649
PpsI GAGTC 3 cut(s) 79, 89, 649
Psp1406I AACGTT 1 cut(s) 287
PspEI GGTNACC 1 cut(s) 56
RsaI GTAC 2 cut(s) 46, 412
RsaNI GTAC 2 cut(s) 45, 411
RseI CAYNNNNRTG 1 cut(s) 248
SalI GTCGAC 1 cut(s) 441
SaqAI TTAA 1 cut(s) 434
SatI GCNGC 2 cut(s) 114, 468
Sau3AI GATC 2 cut(s) 12, 606
ScaI AGTACT 1 cut(s) 412
SchI GAGTC 3 cut(s) 79, 89, 650
SmiMI CAYNNNNRTG 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
SpeI ACTAGT 1 cut(s) 437
Sse9I AATT 4 cut(s) 30, 175, 336, 391
SsiI CCGC 3 cut(s) 73, 172, 296
SspMI CTAG 2 cut(s) 438, 638
StyI CCWWGG 2 cut(s) 190, 484
TaaI ACNGT 2 cut(s) 410, 415
TaiI ACGT 1 cut(s) 290
TaqI TCGA 1 cut(s) 442
TasI AATT 4 cut(s) 30, 175, 336, 391
TatI WGTACW 2 cut(s) 44, 410
Tru1I TTAA 1 cut(s) 434
Tru9I TTAA 1 cut(s) 434
TscAI CASTG 2 cut(s) 127, 134
TseFI GTSAC 2 cut(s) 56, 428
TseI GCWGC 2 cut(s) 113, 467
Tsp45I GTSAC 2 cut(s) 56, 428
TspDTI ATGAA 4 cut(s) 167, 206, 238, 389
TspGWI ACGGA 1 cut(s) 313
TspRI CASTG 2 cut(s) 127, 134
XapI RAATTY 2 cut(s) 30, 175
XceI RCATGY 1 cut(s) 597
XcmI CCANNNNNNNNNTGG 1 cut(s) 397
XmiI GTMKAC 2 cut(s) 259, 442
XmnI GAANNNNTTC 1 cut(s) 199
XspI CTAG 2 cut(s) 438, 638
ZrmI AGTACT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.