Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011231

Physical Location & Seq

Genomic Coordinates Forward (+)

32118372 .. 32122058

Gene Structure 3687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3132 bp

ATGTTCCGCTCTCTCCTCAAACCCAAACCAAAACCTCGCCGCCCTTCCCACCCTGCTTTCACTTCTCTCGCCGCACCTCTCCCCTCAGACTCACCTCACCACCACCAGTCATCTCACCCCCACACCGAAACCCCACCCCCACATTCCACTCCAACCTACGCCAATCTTCTCCATCAGTTCAAAAACTCCCTCACCCAAAACGAAGCCGAAACCTTTCATTCAAAAATCCTCAAACACGGCTTCACTCAAGACCTCTTCTTATCCAACGCCCTCCTCAACCTCTACGTCAAAATCGGTTCTTTATCCAATGCACGCCACCTGTTCGACGAAATGCCTCACAGAAACTCGGTCACCTGGGCCTGCCTCATTTCAGGGTACGCCCGGAGCATAACACCAGACAAGGCCTGCGGGCATTTCAAACGCATGGTTTGCGATGGCTTCGTGCCGAGTGTGTATGCTTTCGGGGCTGTTCTAAGGGCCTGCCAGGAGTTGGGTCCTGGCAGGCTCAAGTTTGGGATGCAGGTTCATGGGTTGTTGTCGAAAATGCATGAGTGTGATGTGTTGCTAGCTAATGTGGTAATGTCAATGTATGGGAGGTGTTTGGGTGCCGCGGATGATGCTTACCGCGCTTTTTGCGAGAGCAAGTTTAAGAATTTAGTGTCTTGGAATTCGATTATTTCGGTTTATTGTCAACGAGGGGATGCAGTGTCTGCTTATGAGATTTTTTCGAAGATGCAGAAGGATGGTGTGGGTTTTGATTTGCAGCCGAATGAGTATACTTTCGGTAGCTTAGTGCCTGCTTGCTGTAATTTGGCGGATTCTGGTTTGGTTTTGCTGCAGCAGATGCTGAGCAGGGTGTGCAAAGCTGGATTTTTGGGGGATTTGTATGTGGGAAGTGCTTTGGTTAGTGGATTCGCGAGGGTTGGGTTAGTTGATTACGCTAGGAAGATTTTTGAGCAGATGGGGGAGAGGAATGTAGTTTCGATGAATGGTTTGATGGTTGGGCTGGTGAGGCAGAAGCAAGGAGAAGAAGCCGCTCGGGTTTTCATGGAGATGAAGGACTTGGTTGGAATGAACATCGATTCGCTTGTGGTTCTTTTGAGTTCTTTCGCTGAATTTTCTGTTTTAGAGGAAGGGAAAAGAAAGGGAAGGGAGGTTCATGCATATGTAATTGCGACTGGCTTGATTCGCAGCAAGGTTGCAATAGAGAATGGACTTGTAAATATGTATGCCAAATGTGGTGCTATTGATGATGCTTGTTCTGTTTTCAGGCTCATGGTAGACAAAGACTCAATCTCATGGAACTCTCTGATTTCTGGTCTCGACCAGAACGAGCGTTTTGAAGACGCAGTCATGAAGTTCTCTGAAGTGAGAAGATCTGAGTTGACGCCTTCAATTTTCACATTAATTAGTGCTTTGAGTTCATGTGCAAGCTTGGAGTGGATCAAGATGGGACAGCAAATACATTGTGAAGCACTTAAACTGGGACTTGATTTGGATGTCTCAGTTTCAAATGCTCTTCTTGCATTGTATTCCGAGACGGGATGTCTTAATGAATCCCGGAATGTTTTCTTCTTGATGCAGGAGTATGACCAAGTGTCGTGGAATTCAATTGTTGGGGCTTTAGCTAGTTCAGAGGCTTCAGTTTCTGAGGCTGTAGAATATTTATTGGAAATGATGCGATCTGGATGGCAACTTAATAGAGTAACATTTATTAGCATTCTTTCAGCAGTTTCATCTCTCTCACTTCACGATCTAGGCCAGCAGATTCATGCTGTAGTATTAAAATACAATGCTGCAAAAGACTCTGCGATTGAGAATGCACTTATTGCTTGCTATGGTAAGTGTGGATATATAGATGACTGTGAGAAGATATTTTCTAGAATGCCTGAAAGAAGGGATGAAGTAAGTTGGAATTCCATGATTTCTGGATACATACACAATGAGCTCTTACCCAAGGCCATCGATTTGGTCTGGTTTATGATGCAGAAGGGTCAGAAATTAGACTCTTTTACTTTTGCCACTGTTCTGAGTGCTTGTGCCTCAGTTGCAACATTAGAGCGTGGGATGGAAGTTCATGCATGTGCTATAAGATCTTGTTTGGAATCTGATGTTGTAGTTGGGAGTGCACTTGTCGACATGTACTCAAAGTGTGGAAGGATTGATTATGCTTCAAGATTCTTTGAGTCGATGCCAGTTAGAAATGTGTATTCCTGGAATTCATTAATATCAGGATATGCTCGCAATGGCGATGGACAAAATGCTCTTAGGATTTTCACACAAATGAAGCAACAAGATCAGCCGCCAGATCATGTTACCTTTGTTGGGGTCCTATCAGCTTGTAGCCATGCAGGGCTCGTGGATGAAGGGTTTCAGCATTTCAATTCTATGAGTAAGGTACATGGACTGGCTCCTAGGATGGAGCACTTTTCATGTATGGTTGATCTTCTTGGAAGGGCAGGAAAACAAAATATGATAGAGGACTTTATCAAAAAGATGCCAATGAAGCCTAATGTTCTTATTTGGAGGACAGTTTTAGGGGCTTGTTGCCGAGCTAATGGTCGTAACACAGAGCTAGGCAGGATGGCTGGTGAAATGCTTTTGGAGTTGGAACCCCAAAATGCTGTGAACTATGTGCTACTTGCCAACATGTATGCTTCTGGTGGAAAGTGGGATGATGTGGCAAAAGCTAGGATGACAATGAGGAAGGCAGCAGTGAAGAAGGAAGCTGGGTGCAGTTGGGTGACCATGAAAGATGGAGTTCATGTTTTTGTAGCCGGAGACAAATTACACCCAGAGAAAGATTTGATATATGAAAAACTGAAGGAACTTAACAAGAAAATGAGGGATGCTGGATATGTGCCTGAAACGAAATTTGCACTATACGATCTTGAACTGGAAAACAAGGAAGAACTGCTTAGCTATCACAGTGAAAAGCTTGCAGTTGCATATGTTCTTACTCGCCAGTCAGAGTTGCCTATAAGGATTATGAAAAATCTCCGGGTTTGTGGTGACTGCCACTCTGCCTTCAAATACATATCAAAGATTGTTGACAGGCAAATAGTATTGCGGGATTCAAACAGATTTCATCACTTTGCGGATGGCAAGTGTTCTTGTGGGGATTTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

1044

Amino Acids

116.35

Weight (kDa)

7.5

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	218 - 270	8.1e-12	PPR repeat family
PPR	PF01535	220 - 250	1.4e-07	PPR repeat
PPR_2	PF13041	634 - 681	1.7e-08	PPR repeat family
PPR_2	PF13041	734 - 782	1.7e-11	PPR repeat family
PPR_3	PF13812	735 - 781	2.2e-06	Pentatricopeptide repeat domain
PPR	PF01535	737 - 764	6.8e-07	PPR repeat
E_motif	PF20431	856 - 915	2.1e-19	E motif
Eplus_motif	PF20430	921 - 948	6.4e-06	E+ motif
DYW_deaminase	PF14432	952 - 1043	4e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09950 AT5G09950 AT5G09950
fragaria_vesca	FvH4_6g40670
malus_domestica	MD09G1126300.v1.1
prunus_persica	Prupe.3G198300_v2.0.a1
pyrus_communis	pycom09g05060
rosa_chinensis	RchiOBHm_Chr2g0156061 RchiOBHm_Chr2g0156111
rosa_laevigata	RLG00000020884 RLG00000020888
rosa_multiflora	Rmu_sc0000260.1_g000021 Rmu_sc0011922.1_g000009
rosa_roxburghii	Rroxscaffold_2G00093230
rosa_rugosa	Rorug02G0451500
rosa_samantha	Rh2AG518400 Rh2BG529500 Rh2CG503100 Rh2DG538700
rosa_wichuraiana	Rw2G042680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	511
AccB1I	GGYRCC	1 cut(s)	605
AccB7I	CCANNNNNTGG	1 cut(s)	490
AccBSI	CCGCTC	2 cut(s)	9, 1037
AccI	GTMKAC	3 cut(s)	776, 1281, 2136
AccII	CGCG	3 cut(s)	611, 627, 917
AclWI	GGATC	1 cut(s)	1451
AcsI	RAATTY	7 cut(s)	652, 667, 1115, 1606, 1915, 2218, 2873
AcuI	CTGAAG	3 cut(s)	1386, 1626, 2843
AcyI	GRCGYC	1 cut(s)	1388
AfaI	GTAC	3 cut(s)	377, 2144, 2400
AfiI	CCNNNNNNNGG	2 cut(s)	490, 2325
AflIII	ACRYGT	2 cut(s)	2139, 2649
AhdI	GACNNNNNGTC	2 cut(s)	1545, 1597
AjnI	CCWGG	4 cut(s)	353, 483, 496, 2213
AloI	GAACNNNNNNTCC	2 cut(s)	1140, 1172
Alw21I	GWGCWC	3 cut(s)	1950, 2131, 2427
Alw26I	GTCTC	4 cut(s)	1325, 1507, 1532, 2775
Alw44I	GTGCAC	1 cut(s)	2127
AlwI	GGATC	1 cut(s)	1451
AlwNI	CAGNNNCTG	3 cut(s)	710, 847, 1649
Ama87I	CYCGRG	1 cut(s)	1038
AoxI	GGCC	5 cut(s)	357, 402, 477, 1759, 1959
ApaLI	GTGCAC	1 cut(s)	2127
ApeKI	GCWGC	6 cut(s)	763, 835, 838, 1191, 1796, 2711
ApoI	RAATTY	7 cut(s)	652, 667, 1115, 1606, 1915, 2218, 2873
AseI	ATTAAT	2 cut(s)	1406, 2225
Asp700I	GAANNNNTTC	3 cut(s)	213, 1568, 2370
AspA2I	CCTAGG	1 cut(s)	2414
AspLEI	GCGC	1 cut(s)	629
AspS9I	GGNCC	4 cut(s)	357, 477, 494, 2329
AsuC2I	CCSGG	3 cut(s)	382, 1561, 3002
AsuHPI	GGTGA	9 cut(s)	84, 89, 107, 184, 343, 1021, 2603, 2755, 3023
AsuII	TTCGAA	1 cut(s)	728
AsuNHI	GCTAGC	1 cut(s)	565
AvaI	CYCGRG	1 cut(s)	1038
AvaII	GGWCC	2 cut(s)	494, 2329
AvrII	CCTAGG	1 cut(s)	2414
BaeGI	GKGCMC	1 cut(s)	2131
BanI	GGYRCC	1 cut(s)	605
BanII	GRGCYC	2 cut(s)	1950, 2358
BauI	CACGAG	1 cut(s)	2357
BbsI	GAAGAC	1 cut(s)	1350
Bbv12I	GWGCWC	3 cut(s)	1950, 2131, 2427
BbvI	GCAGC	6 cut(s)	775, 822, 850, 1203, 1783, 2723
BceAI	ACGGC	1 cut(s)	253
BciT130I	CCWGG	4 cut(s)	355, 485, 498, 2215
BciVI	GTATCC	1 cut(s)	1925
BcnI	CCSGG	3 cut(s)	382, 1561, 3002
BcoDI	GTCTC	4 cut(s)	1325, 1507, 1532, 2775
BfaI	CTAG	8 cut(s)	566, 942, 1629, 1757, 1881, 2415, 2576, 2691
BfmI	CTRYAG	3 cut(s)	836, 1656, 1776
BfuAI	ACCTGC	1 cut(s)	511
BfuI	GTATCC	1 cut(s)	1925
BglII	AGATCT	2 cut(s)	1376, 2093
BlnI	CCTAGG	1 cut(s)	2414
BlpI	GCTNAGC	2 cut(s)	848, 2918
Bme1390I	CCNGG	7 cut(s)	355, 382, 485, 498, 1561, 2215, 3002
Bme18I	GGWCC	2 cut(s)	494, 2329
BmeRI	GACNNNNNGTC	2 cut(s)	1545, 1597
BmeT110I	CYCGRG	1 cut(s)	1038
BmgT120I	GGNCC	4 cut(s)	357, 477, 494, 2329
BmiI	GGNNCC	5 cut(s)	495, 607, 2330, 2412, 2613
BmrFI	CCNGG	7 cut(s)	355, 382, 485, 498, 1561, 2215, 3002
BmrI	ACTGGG	1 cut(s)	1493
BmtI	GCTAGC	1 cut(s)	569
BmuI	ACTGGG	1 cut(s)	1493
BpiI	GAAGAC	1 cut(s)	1350
Bpu1102I	GCTNAGC	2 cut(s)	848, 2918
Bpu14I	TTCGAA	1 cut(s)	728
BpuEI	CTTGAG	2 cut(s)	231, 491
BpuMI	CCSGG	3 cut(s)	382, 1561, 3002
Bsa29I	ATCGAT	2 cut(s)	1080, 1965
BsaHI	GRCGYC	1 cut(s)	1388
BsaI	GGTCTC	1 cut(s)	1325
BsaJI	CCNNGG	4 cut(s)	354, 609, 1956, 2414
BsaXI	ACNNNNNCTCC	2 cut(s)	2751, 2781
Bsc4I	CCNNNNNNNGG	2 cut(s)	490, 2325
Bse1I	ACTGG	7 cut(s)	106, 1183, 1488, 2195, 2412, 2901, 2965
Bse3DI	GCAATG	1 cut(s)	2251
BseBI	CCWGG	4 cut(s)	355, 485, 498, 2215
BseCI	ATCGAT	2 cut(s)	1080, 1965
BseDI	CCNNGG	4 cut(s)	354, 609, 1956, 2414
BseLI	CCNNNNNNNGG	2 cut(s)	490, 2325
BseMI	GCAATG	1 cut(s)	2251
BseMII	CTCAG	7 cut(s)	99, 839, 1371, 1518, 1641, 2021, 2058
BseNI	ACTGG	7 cut(s)	106, 1183, 1488, 2195, 2412, 2901, 2965
BseRI	GAGGAG	2 cut(s)	5, 263
BseSI	GKGCMC	1 cut(s)	2131
BseXI	GCAGC	6 cut(s)	775, 822, 850, 1203, 1783, 2723
BseYI	CCCAGC	1 cut(s)	2729
BsgI	GTGCAG	1 cut(s)	2755
Bsh1236I	CGCG	3 cut(s)	611, 627, 917
BshFI	GGCC	5 cut(s)	359, 404, 479, 1761, 1961
BshNI	GGYRCC	1 cut(s)	605
BshVI	ATCGAT	2 cut(s)	1080, 1965
BsiHKAI	GWGCWC	3 cut(s)	1950, 2131, 2427
BsiHKCI	CYCGRG	1 cut(s)	1038
BsiSI	CCGG	4 cut(s)	382, 1561, 2778, 3001
BslFI	GGGAC	2 cut(s)	1467, 1500
BslI	CCNNNNNNNGG	2 cut(s)	490, 2325
BsmAI	GTCTC	4 cut(s)	1325, 1507, 1532, 2775
BsmBI	CGTCTC	1 cut(s)	1532
BsmFI	GGGAC	2 cut(s)	1467, 1500
BsmI	GAATGC	3 cut(s)	1719, 1825, 1890
BsnI	GGCC	5 cut(s)	359, 404, 479, 1761, 1961
Bso31I	GGTCTC	1 cut(s)	1325
BsoBI	CYCGRG	1 cut(s)	1038
Bsp119I	TTCGAA	1 cut(s)	728
Bsp1286I	GDGCHC	4 cut(s)	1950, 2131, 2358, 2427
Bsp143I	GATC	9 cut(s)	1376, 1443, 1682, 1753, 2093, 2296, 2308, 2443, 2887
Bsp1720I	GCTNAGC	2 cut(s)	848, 2918
Bsp68I	TCGCGA	1 cut(s)	917
BspANI	GGCC	5 cut(s)	359, 404, 479, 1761, 1961
BspCNI	CTCAG	7 cut(s)	98, 840, 1372, 1517, 1642, 2022, 2057
BspDI	ATCGAT	2 cut(s)	1080, 1965
BspFNI	CGCG	3 cut(s)	611, 627, 917
BspHI	TCATGA	1 cut(s)	1353
BspLI	GGNNCC	5 cut(s)	495, 607, 2330, 2412, 2613
BspMAI	CTGCAG	1 cut(s)	840
BspMI	ACCTGC	1 cut(s)	511
BspOI	GCTAGC	1 cut(s)	569
BspPI	GGATC	1 cut(s)	1451
BspQI	GCTCTTC	1 cut(s)	1524
BspT104I	TTCGAA	1 cut(s)	728
BspT107I	GGYRCC	1 cut(s)	605
BspTNI	GGTCTC	1 cut(s)	1325
BsrBI	CCGCTC	2 cut(s)	9, 1037
BsrDI	GCAATG	1 cut(s)	2251
BsrI	ACTGG	7 cut(s)	106, 1183, 1488, 2195, 2412, 2901, 2965
BssECI	CCNNGG	4 cut(s)	354, 609, 1956, 2414
BssMI	GATC	9 cut(s)	1376, 1443, 1682, 1753, 2093, 2296, 2308, 2443, 2887
BssNAI	GTATAC	1 cut(s)	777
BssNI	GRCGYC	1 cut(s)	1388
BssSI	CACGAG	1 cut(s)	2357
BssT1I	CCWWGG	2 cut(s)	1956, 2414
Bst1107I	GTATAC	1 cut(s)	777
Bst2BI	CACGAG	1 cut(s)	2357
Bst2UI	CCWGG	4 cut(s)	355, 485, 498, 2215
Bst4CI	ACNGT	4 cut(s)	1865, 2026, 2533, 2930
Bst6I	CTCTTC	2 cut(s)	260, 1524
BstACI	GRCGYC	1 cut(s)	1388
BstAPI	GCANNNNNTGC	5 cut(s)	429, 710, 844, 858, 1829
BstBI	TTCGAA	1 cut(s)	728
BstDSI	CCRYGG	1 cut(s)	609
BstEII	GGTNACC	2 cut(s)	349, 2743
BstFNI	CGCG	3 cut(s)	611, 627, 917
BstHHI	GCGC	1 cut(s)	629
BstKTI	GATC	9 cut(s)	1379, 1446, 1685, 1756, 2096, 2299, 2311, 2446, 2890
BstMAI	GTCTC	4 cut(s)	1325, 1507, 1532, 2775
BstMBI	GATC	9 cut(s)	1376, 1443, 1682, 1753, 2093, 2296, 2308, 2443, 2887
BstNI	CCWGG	4 cut(s)	355, 485, 498, 2215
BstNSI	RCATGY	3 cut(s)	2085, 2143, 2653
BstPI	GGTNACC	2 cut(s)	349, 2743
BstSCI	CCNGG	7 cut(s)	353, 380, 483, 496, 1559, 2213, 3000
BstSFI	CTRYAG	3 cut(s)	836, 1656, 1776
BstSLI	GKGCMC	1 cut(s)	2131
BstUI	CGCG	3 cut(s)	611, 627, 917
BstV1I	GCAGC	6 cut(s)	775, 822, 850, 1203, 1783, 2723
BstV2I	GAAGAC	1 cut(s)	1350
BstX2I	RGATCY	2 cut(s)	1376, 2093
BstXI	CCANNNNNNTGG	1 cut(s)	1969
BstYI	RGATCY	2 cut(s)	1376, 2093
BstZ17I	GTATAC	1 cut(s)	777
Bsu15I	ATCGAT	2 cut(s)	1080, 1965
BsuI	GTATCC	1 cut(s)	1925
BsuRI	GGCC	5 cut(s)	359, 404, 479, 1761, 1961
BsuTUI	ATCGAT	2 cut(s)	1080, 1965
BtgI	CCRYGG	1 cut(s)	609
BtgZI	GCGATG	2 cut(s)	447, 2265
BtsI	GCAGTG	2 cut(s)	711, 2721
BtsIMutI	CAGTG	4 cut(s)	711, 2022, 2721, 2935
BtuMI	TCGCGA	1 cut(s)	917
BveI	ACCTGC	1 cut(s)	511
CaiI	CAGNNNCTG	3 cut(s)	710, 847, 1649
CciI	TCATGA	1 cut(s)	1353
CfoI	GCGC	1 cut(s)	629
Cfr13I	GGNCC	4 cut(s)	357, 477, 494, 2329
Cfr42I	CCGCGG	1 cut(s)	612
ClaI	ATCGAT	2 cut(s)	1080, 1965
CseI	GACGC	2 cut(s)	1355, 1396
Csp6I	GTAC	3 cut(s)	376, 2143, 2399
CspCI	CAANNNNNGTGG	2 cut(s)	1583, 1618
CviQI	GTAC	3 cut(s)	376, 2143, 2399
DpnI	GATC	9 cut(s)	1378, 1445, 1684, 1755, 2095, 2298, 2310, 2445, 2889
DpnII	GATC	9 cut(s)	1376, 1443, 1682, 1753, 2093, 2296, 2308, 2443, 2887
DriI	GACNNNNNGTC	2 cut(s)	1545, 1597
Eam1104I	CTCTTC	2 cut(s)	260, 1524
Eam1105I	GACNNNNNGTC	2 cut(s)	1545, 1597
EarI	CTCTTC	2 cut(s)	260, 1524
EciI	GGCGGA	1 cut(s)	830
Ecl136II	GAGCTC	1 cut(s)	1948
Eco130I	CCWWGG	2 cut(s)	1956, 2414
Eco147I	AGGCCT	1 cut(s)	404
Eco24I	GRGCYC	2 cut(s)	1950, 2358
Eco31I	GGTCTC	1 cut(s)	1325
Eco47I	GGWCC	2 cut(s)	494, 2329
Eco53kI	GAGCTC	1 cut(s)	1948
Eco57I	CTGAAG	3 cut(s)	1386, 1626, 2843
Eco88I	CYCGRG	1 cut(s)	1038
Eco91I	GGTNACC	2 cut(s)	349, 2743
EcoICRI	GAGCTC	1 cut(s)	1948
EcoO109I	RGGNCCY	3 cut(s)	477, 494, 2329
EcoO65I	GGTNACC	2 cut(s)	349, 2743
EcoRI	GAATTC	4 cut(s)	667, 1606, 1915, 2218
EcoRII	CCWGG	4 cut(s)	353, 483, 496, 2213
EcoT14I	CCWWGG	2 cut(s)	1956, 2414
EcoT22I	ATGCAT	3 cut(s)	549, 1165, 2083
EcoT38I	GRGCYC	2 cut(s)	1950, 2358
ErhI	CCWWGG	2 cut(s)	1956, 2414
Esp3I	CGTCTC	1 cut(s)	1532
FalI	AAGNNNNNCTT	2 cut(s)	2901, 2933
FaqI	GGGAC	2 cut(s)	1467, 1500
FauI	CCCGC	2 cut(s)	401, 3063
FauNDI	CATATG	2 cut(s)	1165, 2950
FblI	GTMKAC	3 cut(s)	776, 1281, 2136
FriOI	GRGCYC	2 cut(s)	1950, 2358
FspBI	CTAG	8 cut(s)	566, 942, 1629, 1757, 1881, 2415, 2576, 2691
GlaI	GCGC	1 cut(s)	628
GsaI	CCCAGC	1 cut(s)	2733
HaeIII	GGCC	5 cut(s)	359, 404, 479, 1761, 1961
HapII	CCGG	4 cut(s)	382, 1561, 2778, 3001
HgaI	GACGC	2 cut(s)	1355, 1396
HhaI	GCGC	1 cut(s)	629
Hin1I	GRCGYC	1 cut(s)	1388
Hin6I	GCGC	1 cut(s)	627
HinP1I	GCGC	1 cut(s)	627
HincII	GTYRAC	4 cut(s)	692, 1386, 2137, 3052
HindII	GTYRAC	4 cut(s)	692, 1386, 2137, 3052
HindIII	AAGCTT	2 cut(s)	1432, 2936
HpaII	CCGG	4 cut(s)	382, 1561, 2778, 3001
HphI	GGTGA	9 cut(s)	84, 89, 107, 184, 343, 1021, 2603, 2755, 3023
Hpy166II	GTNNAC	8 cut(s)	692, 777, 1282, 1386, 2129, 2137, 2629, 3052
Hpy8I	GTNNAC	8 cut(s)	692, 777, 1282, 1386, 2129, 2137, 2629, 3052
Hpy99I	CGWCG	1 cut(s)	329
HpyCH4III	ACNGT	4 cut(s)	1865, 2026, 2533, 2930
HpyCH4IV	ACGT	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	285
Hsp92I	GRCGYC	1 cut(s)	1388
HspAI	GCGC	1 cut(s)	627
KspI	CCGCGG	1 cut(s)	612
Kzo9I	GATC	9 cut(s)	1376, 1443, 1682, 1753, 2093, 2296, 2308, 2443, 2887
LguI	GCTCTTC	1 cut(s)	1524
LmnI	GCTCC	3 cut(s)	384, 2416, 2422
Lsp1109I	GCAGC	6 cut(s)	775, 822, 850, 1203, 1783, 2723
MaeI	CTAG	8 cut(s)	566, 942, 1629, 1757, 1881, 2415, 2576, 2691
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	6 cut(s)	349, 1705, 2314, 2564, 2743, 3011
MalI	GATC	9 cut(s)	1378, 1445, 1684, 1755, 2095, 2298, 2310, 2445, 2889
MbiI	CCGCTC	2 cut(s)	9, 1037
MboI	GATC	9 cut(s)	1376, 1443, 1682, 1753, 2093, 2296, 2308, 2443, 2887
MfeI	CAATTG	1 cut(s)	1611
MflI	RGATCY	2 cut(s)	1376, 2093
MhlI	GDGCHC	4 cut(s)	1950, 2131, 2358, 2427
MlyI	GAGTC	5 cut(s)	83, 1283, 1799, 2000, 2195
MmeI	TCCRAC	5 cut(s)	176, 288, 1048, 1892, 2589
Mph1103I	ATGCAT	3 cut(s)	549, 1165, 2083
MroXI	GAANNNNTTC	3 cut(s)	213, 1568, 2370
MseI	TTAA	8 cut(s)	648, 1406, 1479, 1551, 1698, 1784, 2225, 2832
MslI	CAYNNNNRTG	5 cut(s)	552, 1052, 1164, 2082, 2282
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	4 cut(s)	382, 1561, 2778, 3001
MspR9I	CCNGG	7 cut(s)	355, 382, 485, 498, 1561, 2215, 3002
MunI	CAATTG	1 cut(s)	1611
Mva1269I	GAATGC	3 cut(s)	1719, 1825, 1890
MvaI	CCWGG	4 cut(s)	355, 485, 498, 2215
MvnI	CGCG	3 cut(s)	611, 627, 917
NciI	CCSGG	3 cut(s)	382, 1561, 3002
NdeI	CATATG	2 cut(s)	1165, 2950
NdeII	GATC	9 cut(s)	1376, 1443, 1682, 1753, 2093, 2296, 2308, 2443, 2887
NheI	GCTAGC	1 cut(s)	565
NlaIV	GGNNCC	5 cut(s)	495, 607, 2330, 2412, 2613
NmeAIII	GCCGAG	2 cut(s)	471, 2576
NmuCI	GTSAC	3 cut(s)	349, 2743, 3011
NruI	TCGCGA	1 cut(s)	917
NsiI	ATGCAT	3 cut(s)	549, 1165, 2083
NspI	RCATGY	3 cut(s)	2085, 2143, 2653
NspV	TTCGAA	1 cut(s)	728
PagI	TCATGA	1 cut(s)	1353
PceI	AGGCCT	1 cut(s)	404
PciI	ACATGT	2 cut(s)	2139, 2649
PciSI	GCTCTTC	1 cut(s)	1524
PcsI	WCGNNNNNNNCGW	1 cut(s)	1329
PctI	GAATGC	3 cut(s)	1719, 1825, 1890
PdmI	GAANNNNTTC	3 cut(s)	213, 1568, 2370
PfeI	GAWTC	9 cut(s)	818, 912, 1082, 1186, 1556, 1768, 2105, 2178, 3074
PflFI	GACNNNGTC	1 cut(s)	1349
PflMI	CCANNNNNTGG	1 cut(s)	490
PfoI	TCCNGGA	2 cut(s)	1559, 2213
PleI	GAGTC	5 cut(s)	83, 1283, 1799, 2000, 2194
PpsI	GAGTC	5 cut(s)	83, 1283, 1799, 2000, 2194
PpuMI	RGGWCCY	2 cut(s)	494, 2329
PscI	ACATGT	2 cut(s)	2139, 2649
PshBI	ATTAAT	2 cut(s)	1406, 2225
Psp124BI	GAGCTC	1 cut(s)	1950
Psp5II	RGGWCCY	2 cut(s)	494, 2329
Psp6I	CCWGG	4 cut(s)	353, 483, 496, 2213
PspEI	GGTNACC	2 cut(s)	349, 2743
PspFI	CCCAGC	1 cut(s)	2729
PspGI	CCWGG	4 cut(s)	353, 483, 496, 2213
PspN4I	GGNNCC	5 cut(s)	495, 607, 2330, 2412, 2613
PspPI	GGNCC	4 cut(s)	357, 477, 494, 2329
PspPPI	RGGWCCY	2 cut(s)	494, 2329
PstI	CTGCAG	1 cut(s)	840
PstNI	CAGNNNCTG	3 cut(s)	710, 847, 1649
PsuI	RGATCY	2 cut(s)	1376, 2093
PsyI	GACNNNGTC	1 cut(s)	1349
RruI	TCGCGA	1 cut(s)	917
RsaI	GTAC	3 cut(s)	377, 2144, 2400
RsaNI	GTAC	3 cut(s)	376, 2143, 2399
RseI	CAYNNNNRTG	5 cut(s)	552, 1052, 1164, 2082, 2282
SacI	GAGCTC	1 cut(s)	1950
SacII	CCGCGG	1 cut(s)	612
SalI	GTCGAC	1 cut(s)	2135
SapI	GCTCTTC	1 cut(s)	1524
SaqAI	TTAA	8 cut(s)	648, 1406, 1479, 1551, 1698, 1784, 2225, 2832
Sau3AI	GATC	9 cut(s)	1376, 1443, 1682, 1753, 2093, 2296, 2308, 2443, 2887
Sau96I	GGNCC	4 cut(s)	357, 477, 494, 2329
SchI	GAGTC	5 cut(s)	83, 1283, 1799, 2000, 2195
ScrFI	CCNGG	7 cut(s)	355, 382, 485, 498, 1561, 2215, 3002
SduI	GDGCHC	4 cut(s)	1950, 2131, 2358, 2427
SfcI	CTRYAG	3 cut(s)	836, 1656, 1776
Sfr303I	CCGCGG	1 cut(s)	612
SfuI	TTCGAA	1 cut(s)	728
SgrBI	CCGCGG	1 cut(s)	612
SinI	GGWCC	2 cut(s)	494, 2329
SmiMI	CAYNNNNRTG	5 cut(s)	552, 1052, 1164, 2082, 2282
SmlI	CTYRAG	2 cut(s)	246, 506
SmoI	CTYRAG	2 cut(s)	246, 506
SseBI	AGGCCT	1 cut(s)	404
SspI	AATATT	1 cut(s)	1664
SspMI	CTAG	8 cut(s)	566, 942, 1629, 1757, 1881, 2415, 2576, 2691
SstI	GAGCTC	1 cut(s)	1950
StuI	AGGCCT	1 cut(s)	404
StyD4I	CCNGG	7 cut(s)	353, 380, 483, 496, 1559, 2213, 3000
StyI	CCWWGG	2 cut(s)	1956, 2414
TaaI	ACNGT	4 cut(s)	1865, 2026, 2533, 2930
TaiI	ACGT	1 cut(s)	288
TaqII	GACCGA	1 cut(s)	337
TatI	WGTACW	1 cut(s)	2142
TauI	GCSGC	5 cut(s)	42, 74, 611, 1037, 2305
TfiI	GAWTC	9 cut(s)	818, 912, 1082, 1186, 1556, 1768, 2105, 2178, 3074
Tru1I	TTAA	8 cut(s)	648, 1406, 1479, 1551, 1698, 1784, 2225, 2832
Tru9I	TTAA	8 cut(s)	648, 1406, 1479, 1551, 1698, 1784, 2225, 2832
TscAI	CASTG	4 cut(s)	711, 2029, 2721, 2935
TseFI	GTSAC	3 cut(s)	349, 2743, 3011
TseI	GCWGC	6 cut(s)	763, 835, 838, 1191, 1796, 2711
Tsp45I	GTSAC	3 cut(s)	349, 2743, 3011
TspRI	CASTG	4 cut(s)	711, 2029, 2721, 2935
Tth111I	GACNNNGTC	1 cut(s)	1349
Van91I	CCANNNNNTGG	1 cut(s)	490
VneI	GTGCAC	1 cut(s)	2127
VpaK11BI	GGWCC	2 cut(s)	494, 2329
VspI	ATTAAT	2 cut(s)	1406, 2225
XapI	RAATTY	7 cut(s)	652, 667, 1115, 1606, 1915, 2218, 2873
XbaI	TCTAGA	1 cut(s)	1880
XceI	RCATGY	3 cut(s)	2085, 2143, 2653
XmaJI	CCTAGG	1 cut(s)	2414
XmiI	GTMKAC	3 cut(s)	776, 1281, 2136
XmnI	GAANNNNTTC	3 cut(s)	213, 1568, 2370
XspI	CTAG	8 cut(s)	566, 942, 1629, 1757, 1881, 2415, 2576, 2691
Zsp2I	ATGCAT	3 cut(s)	549, 1165, 2083

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.