Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011231

Physical Location & Seq

Genomic Coordinates Forward (+)

72817197 .. 72818618

Gene Structure 1422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52490

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGAGATGAAGGACTTGGTTGGAATAAATATTGATTCGCTTGTGGTTCTTTTAAGTTCATTCACTGAATTTTGTGTTTTAGAGGAAGGGAAAAGAAAGGGAAGAGAAGTTCACGCATATGTAATTGCAACTGGCTTGATTAACAGCAAGGTTGCAATAGAGAATGGGCTTGTAAATATGAATGCTAAATGTGGTGCTATTGATGATGCTTGTTCAGTTTTCAGGCTCATGGTAGACAGAGACTTAATCTCATGGAACTCTCTGATCTCTGGTCTCGACCAGAATGAGTGTTTTGAAGATGCAATCATGAAGTTCTCTGAAATGAGAAAATCTGAGTTGACACCTTCAATTTTCACATTAATTAGTGCTTTGAGTTCATGTGCAAGCTTGGAGTGGATCATGATGGGACTGCAAATACATTGTGAAGCACTTAAATTGGGACTTGATTTGGATGTTTCAGTTTCAAATGCTCTTCTTGCACTGTATTCCGACACAGGGTGCCTTAGTGAATCCCGGAATGTTTTTTTCTTGATGCAGGAGTATGACCAAGTGTCGTGGAATTCCATAGTTGGGGCTTTAGCTAGTTCAGAGGCTTCAGTTTTTGAAGCTGTAGAATATTTATTGGAAATGATGCGATCTGGATGGGAACTTAATAGAGTAACATTTATTAGCATTCTTTCAGCAGTTTCATCTTTTTCACTTCATGAGCTAGGCCAGCAGATTCATGTTGTAGTCTTAAAATACAATGCAGCAAAGGACTGTGCTATTGAGAATGCGCTTATTGCTTGCTATGGAAAGTGTGGACAGATAGAGGACTGCGAGAAGATATTTTCTAGAATGCCTGAAAGAAGGGATGAAGTAAGTTGGAATTCCATGATTTCTGGGTACATACATAATGAGCTCTTGCCCAAGGCCATGTATTTGGTCTGGTTTATGATTGAGAGGGGTCAGAAATTAGACTCTTTTACTTTTGCTACTGTTCTGAGTGCTTGTGCTTCAGTTGCAACATTAGAGCGTGGGATGGAAGTTCGTGCTTGTGCGGTAAGAGCTTATTTGGAATCTGATGTTGTAGTTGGGAGTGCACTTGTCGACATGTATTCAAAGTGTGGAAGGATTGATTATGCTTCAAGATTCTTCGAGTTGACGCTGGTAAGGAATGCGTATTCCTGGAATTCATTAATATCAGGATATGCTCGCAATGGAGATGGACAAAAAACTCTGAGGCTTTTCACACAAATGAAGCAACAAGATCAGCCACCAGATCACGTTACCTTTGTTCGGTTCCTATCTGCTTGTAGCCTTGCAGGGCTCGTGGATGAAGGGTTTCAGCATTTCAATTCCATGAGTAAAGTACATGGACTGGCTCCTAGGATGGAGCACTTTTCATGTATTGTTGATCTTCTCGGAAGGGCAGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

473

Amino Acids

52.75

Weight (kDa)

5.1

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	81 - 128	2.8e-06	PPR repeat family
PPR_2	PF13041	285 - 332	3.3e-08	PPR repeat family
PPR_2	PF13041	386 - 432	2.7e-10	PPR repeat family
PPR	PF01535	388 - 415	1.5e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09950 AT5G09950 AT5G09950
fragaria_vesca	FvH4_6g40670
malus_domestica	MD09G1126300.v1.1
prunus_persica	Prupe.3G198300_v2.0.a1
pyrus_communis	pycom09g05060
rosa_chinensis	RchiOBHm_Chr2g0156061 RchiOBHm_Chr2g0156111
rosa_laevigata	RLG00000020884 RLG00000020888
rosa_multiflora	Rmu_sc0000260.1_g000021 Rmu_sc0011922.1_g000009
rosa_roxburghii	Rroxscaffold_2G00093230
rosa_rugosa	Rorug02G0451500
rosa_samantha	Rh2AG518400 Rh2BG529500 Rh2CG503100 Rh2DG538700
rosa_wichuraiana	Rw2G042680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	498
AccI	GTMKAC	2 cut(s)	234, 1089
AciI	CCGC	1 cut(s)	1040
AclWI	GGATC	1 cut(s)	404
AcsI	RAATTY	4 cut(s)	68, 559, 868, 1171
AcuI	CTGAAG	2 cut(s)	579, 981
AdeI	CACNNNGTG	1 cut(s)	498
AfaI	GTAC	2 cut(s)	887, 1353
AfiI	CCNNNNNNNGG	3 cut(s)	495, 570, 1278
AflIII	ACRYGT	1 cut(s)	1092
AgsI	TTSAA	7 cut(s)	296, 348, 465, 605, 1101, 1128, 1336
AhdI	GACNNNNNGTC	1 cut(s)	550
AjnI	CCWGG	1 cut(s)	1166
AloI	GAACNNNNNNTCC	2 cut(s)	93, 125
AluBI	AGCT	6 cut(s)	387, 581, 608, 709, 901, 1049
AluI	AGCT	6 cut(s)	387, 581, 608, 709, 901, 1049
Alw21I	GWGCWC	3 cut(s)	903, 1084, 1380
Alw26I	GTCTC	2 cut(s)	234, 278
Alw44I	GTGCAC	1 cut(s)	1080
AlwI	GGATC	1 cut(s)	404
AoxI	GGCC	2 cut(s)	712, 912
ApaLI	GTGCAC	1 cut(s)	1080
ApeKI	GCWGC	1 cut(s)	749
ApoI	RAATTY	4 cut(s)	68, 559, 868, 1171
AseI	ATTAAT	2 cut(s)	359, 1178
Asp700I	GAANNNNTTC	1 cut(s)	1323
AspA2I	CCTAGG	1 cut(s)	1367
AspLEI	GCGC	1 cut(s)	778
AsuC2I	CCSGG	1 cut(s)	514
AvrII	CCTAGG	1 cut(s)	1367
BaeGI	GKGCMC	1 cut(s)	1084
BanI	GGYRCC	1 cut(s)	498
BanII	GRGCYC	2 cut(s)	903, 1311
BauI	CACGAG	1 cut(s)	1310
Bbv12I	GWGCWC	3 cut(s)	903, 1084, 1380
BbvI	GCAGC	1 cut(s)	761
BccI	CCATC	5 cut(s)	397, 636, 1015, 1199, 1366
BciT130I	CCWGG	1 cut(s)	1168
BcnI	CCSGG	1 cut(s)	514
BcoDI	GTCTC	2 cut(s)	234, 278
BfaI	CTAG	4 cut(s)	582, 710, 834, 1368
BfmI	CTRYAG	1 cut(s)	609
BisI	GCNGC	1 cut(s)	750
BlnI	CCTAGG	1 cut(s)	1367
BlsI	GCNGC	1 cut(s)	751
Bme1390I	CCNGG	2 cut(s)	514, 1168
BmeRI	GACNNNNNGTC	1 cut(s)	550
BmiI	GGNNCC	3 cut(s)	500, 1283, 1365
BmrFI	CCNGG	2 cut(s)	514, 1168
BmsI	GCATC	4 cut(s)	196, 289, 522, 621
BpuMI	CCSGG	1 cut(s)	514
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	909, 1367
Bsc4I	CCNNNNNNNGG	3 cut(s)	495, 570, 1278
Bse1I	ACTGG	2 cut(s)	136, 1365
Bse3DI	GCAATG	1 cut(s)	1204
BseBI	CCWGG	1 cut(s)	1168
BseDI	CCNNGG	2 cut(s)	909, 1367
BseGI	GGATG	6 cut(s)	457, 647, 859, 1026, 1321, 1377
BseLI	CCNNNNNNNGG	3 cut(s)	495, 570, 1278
BseMI	GCAATG	1 cut(s)	1204
BseMII	CTCAG	3 cut(s)	324, 974, 1211
BseNI	ACTGG	2 cut(s)	136, 1365
BseSI	GKGCMC	1 cut(s)	1084
BseXI	GCAGC	1 cut(s)	761
BshFI	GGCC	2 cut(s)	714, 914
BshNI	GGYRCC	1 cut(s)	498
BsiHKAI	GWGCWC	3 cut(s)	903, 1084, 1380
BsiSI	CCGG	1 cut(s)	514
BslFI	GGGAC	2 cut(s)	420, 453
BslI	CCNNNNNNNGG	3 cut(s)	495, 570, 1278
BsmAI	GTCTC	2 cut(s)	234, 278
BsmFI	GGGAC	2 cut(s)	420, 453
BsmI	GAATGC	5 cut(s)	187, 672, 778, 843, 1162
BsnI	GGCC	2 cut(s)	714, 914
Bso31I	GGTCTC	1 cut(s)	278
Bsp1286I	GDGCHC	4 cut(s)	903, 1084, 1311, 1380
Bsp143I	GATC	6 cut(s)	264, 396, 635, 1249, 1261, 1396
BspACI	CCGC	1 cut(s)	1040
BspANI	GGCC	2 cut(s)	714, 914
BspCNI	CTCAG	3 cut(s)	325, 975, 1212
BspHI	TCATGA	3 cut(s)	306, 399, 703
BspLI	GGNNCC	3 cut(s)	500, 1283, 1365
BspPI	GGATC	1 cut(s)	404
BspQI	GCTCTTC	1 cut(s)	477
BspT107I	GGYRCC	1 cut(s)	498
BspTNI	GGTCTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	1204
BsrI	ACTGG	2 cut(s)	136, 1365
BssECI	CCNNGG	2 cut(s)	909, 1367
BssMI	GATC	6 cut(s)	264, 396, 635, 1249, 1261, 1396
BssSI	CACGAG	1 cut(s)	1310
BssT1I	CCWWGG	2 cut(s)	909, 1367
Bst2BI	CACGAG	1 cut(s)	1310
Bst2UI	CCWGG	1 cut(s)	1168
Bst4CI	ACNGT	3 cut(s)	483, 761, 979
Bst6I	CTCTTC	2 cut(s)	97, 477
BstC8I	GCNNGC	4 cut(s)	385, 716, 787, 1195
BstDEI	CTNAG	4 cut(s)	333, 503, 983, 1220
BstF5I	GGATG	6 cut(s)	457, 647, 859, 1026, 1321, 1377
BstHHI	GCGC	1 cut(s)	778
BstKTI	GATC	6 cut(s)	267, 399, 638, 1252, 1264, 1399
BstMAI	GTCTC	2 cut(s)	234, 278
BstMBI	GATC	6 cut(s)	264, 396, 635, 1249, 1261, 1396
BstMWI	GCNNNNNNNGC	5 cut(s)	476, 715, 782, 1001, 1046
BstNI	CCWGG	1 cut(s)	1168
BstNSI	RCATGY	1 cut(s)	1096
BstSCI	CCNGG	2 cut(s)	512, 1166
BstSFI	CTRYAG	1 cut(s)	609
BstSLI	GKGCMC	1 cut(s)	1084
BstV1I	GCAGC	1 cut(s)	761
BstXI	CCANNNNNNTGG	1 cut(s)	922
BsuRI	GGCC	2 cut(s)	714, 914
BtsCI	GGATG	6 cut(s)	457, 647, 859, 1026, 1321, 1377
BtsIMutI	CAGTG	2 cut(s)	63, 479
Cac8I	GCNNGC	4 cut(s)	385, 716, 787, 1195
CciI	TCATGA	3 cut(s)	306, 399, 703
CfoI	GCGC	1 cut(s)	778
CseI	GACGC	1 cut(s)	1153
Csp6I	GTAC	2 cut(s)	886, 1352
CspCI	CAANNNNNGTGG	2 cut(s)	536, 571
CviQI	GTAC	2 cut(s)	886, 1352
DdeI	CTNAG	4 cut(s)	333, 503, 983, 1220
DpnI	GATC	6 cut(s)	266, 398, 637, 1251, 1263, 1398
DpnII	GATC	6 cut(s)	264, 396, 635, 1249, 1261, 1396
DraIII	CACNNNGTG	1 cut(s)	498
DriI	GACNNNNNGTC	1 cut(s)	550
Eam1104I	CTCTTC	2 cut(s)	97, 477
Eam1105I	GACNNNNNGTC	1 cut(s)	550
EarI	CTCTTC	2 cut(s)	97, 477
Ecl136II	GAGCTC	1 cut(s)	901
Eco130I	CCWWGG	2 cut(s)	909, 1367
Eco24I	GRGCYC	2 cut(s)	903, 1311
Eco31I	GGTCTC	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	901
Eco57I	CTGAAG	2 cut(s)	579, 981
EcoICRI	GAGCTC	1 cut(s)	901
EcoRI	GAATTC	3 cut(s)	559, 868, 1171
EcoRII	CCWGG	1 cut(s)	1166
EcoT14I	CCWWGG	2 cut(s)	909, 1367
EcoT38I	GRGCYC	2 cut(s)	903, 1311
ErhI	CCWWGG	2 cut(s)	909, 1367
FaqI	GGGAC	2 cut(s)	420, 453
FauNDI	CATATG	1 cut(s)	118
FblI	GTMKAC	2 cut(s)	234, 1089
Fnu4HI	GCNGC	1 cut(s)	750
FokI	GGATG	6 cut(s)	464, 654, 866, 1033, 1328, 1384
FriOI	GRGCYC	2 cut(s)	903, 1311
Fsp4HI	GCNGC	1 cut(s)	750
FspBI	CTAG	4 cut(s)	582, 710, 834, 1368
GlaI	GCGC	1 cut(s)	777
GluI	GCNGC	1 cut(s)	750
HaeIII	GGCC	2 cut(s)	714, 914
HapII	CCGG	1 cut(s)	514
HgaI	GACGC	1 cut(s)	1153
HhaI	GCGC	1 cut(s)	778
Hin6I	GCGC	1 cut(s)	776
HinP1I	GCGC	1 cut(s)	776
HincII	GTYRAC	3 cut(s)	339, 1090, 1143
HindII	GTYRAC	3 cut(s)	339, 1090, 1143
HindIII	AAGCTT	1 cut(s)	385
HinfI	GANTC	6 cut(s)	35, 509, 721, 959, 1058, 1131
HpaII	CCGG	1 cut(s)	514
Hpy166II	GTNNAC	7 cut(s)	112, 235, 339, 803, 1082, 1090, 1143
Hpy188III	TCNNGA	9 cut(s)	275, 307, 400, 529, 639, 704, 834, 1128, 1185
Hpy8I	GTNNAC	7 cut(s)	112, 235, 339, 803, 1082, 1090, 1143
HpyAV	CCTTC	7 cut(s)	4, 80, 354, 843, 1104, 1313, 1401
HpyCH4III	ACNGT	3 cut(s)	483, 761, 979
HpyCH4IV	ACGT	1 cut(s)	1266
HpyF10VI	GCNNNNNNNGC	5 cut(s)	476, 715, 782, 1001, 1046
HpyF3I	CTNAG	4 cut(s)	333, 503, 983, 1220
HpySE526I	ACGT	1 cut(s)	1266
HspAI	GCGC	1 cut(s)	776
Kzo9I	GATC	6 cut(s)	264, 396, 635, 1249, 1261, 1396
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	2 cut(s)	1369, 1375
Lsp1109I	GCAGC	1 cut(s)	761
LweI	GCATC	4 cut(s)	196, 289, 522, 621
MaeI	CTAG	4 cut(s)	582, 710, 834, 1368
MaeII	ACGT	1 cut(s)	1266
MaeIII	GTNAC	2 cut(s)	658, 1267
MalI	GATC	6 cut(s)	266, 398, 637, 1251, 1263, 1398
MboI	GATC	6 cut(s)	264, 396, 635, 1249, 1261, 1396
MboII	GAAGA	6 cut(s)	114, 308, 464, 835, 1126, 1391
MhlI	GDGCHC	4 cut(s)	903, 1084, 1311, 1380
MlyI	GAGTC	1 cut(s)	953
MmeI	TCCRAC	2 cut(s)	513, 845
MnlI	CCTC	5 cut(s)	76, 583, 805, 936, 1215
MroXI	GAANNNNTTC	1 cut(s)	1323
MseI	TTAA	8 cut(s)	53, 141, 245, 359, 432, 651, 737, 1178
MslI	CAYNNNNRTG	2 cut(s)	117, 1235
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	2 cut(s)	514, 1168
Mva1269I	GAATGC	5 cut(s)	187, 672, 778, 843, 1162
MvaI	CCWGG	1 cut(s)	1168
MwoI	GCNNNNNNNGC	5 cut(s)	476, 715, 782, 1001, 1046
NciI	CCSGG	1 cut(s)	514
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	6 cut(s)	264, 396, 635, 1249, 1261, 1396
NlaIV	GGNNCC	3 cut(s)	500, 1283, 1365
NspI	RCATGY	1 cut(s)	1096
PagI	TCATGA	3 cut(s)	306, 399, 703
PciI	ACATGT	1 cut(s)	1092
PciSI	GCTCTTC	1 cut(s)	477
PctI	GAATGC	5 cut(s)	187, 672, 778, 843, 1162
PdmI	GAANNNNTTC	1 cut(s)	1323
PfeI	GAWTC	5 cut(s)	35, 509, 721, 1058, 1131
PfoI	TCCNGGA	2 cut(s)	512, 1166
PkrI	GCNGC	1 cut(s)	751
PleI	GAGTC	1 cut(s)	953
PpsI	GAGTC	1 cut(s)	953
PscI	ACATGT	1 cut(s)	1092
PshBI	ATTAAT	2 cut(s)	359, 1178
Psp124BI	GAGCTC	1 cut(s)	903
Psp6I	CCWGG	1 cut(s)	1166
PspGI	CCWGG	1 cut(s)	1166
PspN4I	GGNNCC	3 cut(s)	500, 1283, 1365
RsaI	GTAC	2 cut(s)	887, 1353
RsaNI	GTAC	2 cut(s)	886, 1352
RseI	CAYNNNNRTG	2 cut(s)	117, 1235
SacI	GAGCTC	1 cut(s)	903
SalI	GTCGAC	1 cut(s)	1088
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	8 cut(s)	53, 141, 245, 359, 432, 651, 737, 1178
SatI	GCNGC	1 cut(s)	750
Sau3AI	GATC	6 cut(s)	264, 396, 635, 1249, 1261, 1396
SchI	GAGTC	1 cut(s)	953
ScrFI	CCNGG	2 cut(s)	514, 1168
SduI	GDGCHC	4 cut(s)	903, 1084, 1311, 1380
SfaNI	GCATC	4 cut(s)	196, 289, 522, 621
SfcI	CTRYAG	1 cut(s)	609
SmiMI	CAYNNNNRTG	2 cut(s)	117, 1235
SsiI	CCGC	1 cut(s)	1040
SspI	AATATT	2 cut(s)	31, 617
SspMI	CTAG	4 cut(s)	582, 710, 834, 1368
SstI	GAGCTC	1 cut(s)	903
StyD4I	CCNGG	2 cut(s)	512, 1166
StyI	CCWWGG	2 cut(s)	909, 1367
TaaI	ACNGT	3 cut(s)	483, 761, 979
TaiI	ACGT	1 cut(s)	1269
TaqI	TCGA	3 cut(s)	276, 1089, 1137
TatI	WGTACW	1 cut(s)	1351
TfiI	GAWTC	5 cut(s)	35, 509, 721, 1058, 1131
Tru1I	TTAA	8 cut(s)	53, 141, 245, 359, 432, 651, 737, 1178
Tru9I	TTAA	8 cut(s)	53, 141, 245, 359, 432, 651, 737, 1178
TscAI	CASTG	2 cut(s)	70, 486
TseI	GCWGC	1 cut(s)	749
TspRI	CASTG	2 cut(s)	70, 486
VneI	GTGCAC	1 cut(s)	1080
VspI	ATTAAT	2 cut(s)	359, 1178
XapI	RAATTY	4 cut(s)	68, 559, 868, 1171
XbaI	TCTAGA	1 cut(s)	833
XceI	RCATGY	1 cut(s)	1096
XmaJI	CCTAGG	1 cut(s)	1367
XmiI	GTMKAC	2 cut(s)	234, 1089
XmnI	GAANNNNTTC	1 cut(s)	1323
XspI	CTAG	4 cut(s)	582, 710, 834, 1368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.