Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011231

Physical Location & Seq

Genomic Coordinates Reverse (-)

9757200 .. 9760427

Gene Structure 3228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1126300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3228 bp

ATGTGTCGCTGCTTTCTCTCCTTCACTCCCTCTCGCTCTCACAGAAAACTTCCCCACCGTTCAAACCCTGCTCTCACAACATCTGCCGCCGCCTCCCCTGCCGTCTTAAGCCCACCGCGCGCCTCCCTTTTCTTCCAATCTCAAAACCCAACTCGCCATTTGATCCCATTCAAGAGCTTGGCTGATCAGTACACATCATCCGAGCCGCAGATTAAAACCCAAGATTTGGATCATGCCAGCACTGGTGCATATGGGTATCTTGCTACTCGATTCAGGGACTCGCGTACCTCAAACGACGCGCAGAACTTTCATTTGCAGATTTGCAAACTTGGGTTTGCTAATGATTTGTTTTTGTGCAATACTCTTATCAATGTTTACGTCAGAAGCGGTGCTTTGGTGGAAGCAGGCATGCTGTTCGAGGAAATGCCTGACAAGAACTCGGTTACTTGGGCTTGCTTGATTTCGGGGTATACCCAGAATGGCATGCCAAATGAGGCGTGTGCCCATTTTAAACGGATGGTTTCTGGCGGTTTTTCGCCTAGTCCTTACGCTTTTGGTAGCGTTCTTCGAGCTTGCCAGGAGTCTGGTCCTAGCAAGCTTAAGTTTGGGATGCAAACACATGGGTTGATATCTAAAACGGATCATGCTTCTGATATGGTAATGGCTAATGTGCTGATGTCAATGTATGGGAAATGTATGGGGCCTGTTGATGATGCTTACCGGGTTTTTTGCGAGATAAAGATTAGAAATTCAATATCTTGGAACTCAATTATTTCAGTTTATTGCCAAAGAGGTGATGCAGTCTCTGCATACAAGCTTTTCTCGAGCATGCAAAAGGACGGTGTAGGTTTCAATTTGAAACCTAATGAGTACACATTTGGTAGCTTAATAACTGCAGTTTGTTCTTTGGCTGATTCGGGTTTGAGTTTGCTTCAGCAAATGCTGACCAGGATTAAGAAATCTGGAATTTTACAGGACTTGTATGTGGGTAGTGCTTTGGTTAGTGGATTTGCAAAGTTTGGGTTAATTGATTATGCTAGGAATATTTTTGAGCAGATGAGTCAGAGGAATGCAGTGTCAATGAACGGGTTGATGGTTGCATTGGTGAGGCAGAAGCGAGGAGAAGAAGCCACTGAAGTTTTCATGGAGATGAAGGACTTGGTTGGAACAAACCTTGATTCGCTTGTGGTTCTTTTAAGTTCTTTTCCTGAATTTTTGGTTTTGGAGGAAGGGAAAAGAAGGGGAAGAGAGGTTCATGCATACGTAATCGGGGCTGGTTTAATTTACAGAAAAGTTGCAATAGGTAATGGACTGGTTAATATGTATGCTAAATGTGGCGCTATTAATGACGCTTGCTCAGTTTTCAGGCACATGGCTGACAAAGACTTAATCTCATGGAACTCTCTAATCTCTGGTCTTGACCAGAATGAGCGTTTTGAAGATGCAGTCGTGAACTTCCGTGACATGAGGCGATCAGAGTTGATGCCTTCAAATTTTACATTAATTAGTGCTTTGAGTTCATGTGCAAGCTTGGGCTGGATCATGTTGGGACAACAGATACATTGTGAAGCACTTAAATTGGGACTTGATTTCGATGTTTCAGTGTCAAATGCTCTTCTTGCATTATATTCCGACACTGGGTATCTTAGTGAATGCCGAAATGTTTTCTTCTTAATGCCGGAGTATGACCAAGTGTCATGGAATTCCATAATTGGGGCTTTAGCTGGTTCAGAGGCATCAGTTTCAGAAGCTGTACAATATTTCTTGGACATGATGCAATCTGGGTGGGAGCTTAATAGAGTAACACTTTTGAGCATTCTTTCAGCAGTTTCATCTCTCTCACTTCCGGAGCTGGGCCAGCAGATTCATGCTGTAGTCTTAAAATACAATGCTATCGAGGACTGTGCCATTGAGAATGCACTAATTACTTTCTATGGAAAGTGTGGAGGGATAGATGACTGTGAAAGGATATTTTCTAGAATGTCTGAGAGAAGGGATGAAATAAGTTGGAATGCCATGATTTCTGGATACATACACAATGAGCTCTTGCCCAAAGCCATGGGTTTGGTCTGGTTTATGATGCAGAGGGGTCAGAGATTAGACTCGTTTACCTTTGCTACCGTTCTCAGTGCTTGTGCCTCCATAGCAACATTAGAACGTGGAATGGAAGTTCATGCATGCGGGATAAGAGCTTGTTTGGAATCTGATGTTGTAGTTGGAAGTGCACTTGTTGACATGTACTCAAAATGTGGAAGGATTGATTATGCTTCAAGGTTCTTTGAATCAATGCCAGTGAGGAATGCGTATTCTTGGAATTCACTGATATCAGGTTTTGCTCGTAATGGACAGGGACAAGAAGCTCTGAGACTTTTCGCGCAAATGAAGCAACAAGGTCAGATGCCAGATCATGTTACTTTTGTCGGGGTCTTATCAGCTTGTAGCCATGCAGGAATGGTGGATGAAGGGTTTCACCATTTCGAATCCATGACCAAAGTACATGGACTGGCTCCTAGGATGGAGCACTTTTCATGTATGGTTGATCTTCTTGGCAGGGCAGGAAAACTTAATATGATAGAGGACTTCATCCACATAATGCCAATGAAGCCTAATGTTCTTATTTGGAGGACAGTTTTAGGGGCTTGTGGCCGAGCTAGTGGTCGCAACACCGAACTAGGTAGAAGGGCTGCTGAAATGCTATTAGAGTTGGAACCCCAAAACGCTACAAACTACGTGCTTCTTGCTAATATGTATGCTTCTGGAGGGAAGTGGGATGATGTGGCCAAGGCGCGGATGGCAATGAGGAAGGCATCAGCAAAGAAGGAAGCAGGGTGTAGTTGGGTCACCATGAAGGATGGTGTTCATGTGTTTGTAGCAGGAGACAAATCACACCCGGAGAAAGATTTAATATACGATAAACTGAAGGAACTTAATGGAAAAATGAGGGATGCAGGATATGTGCCTGAAACGAAATTTGCGCTTTATGATCTTGAACAGGAGAACAAGGAAGAACTCCTGAGCTATCACAGCGAGAAGCTTGCGGTTGCATATGTTCTTACTCGCCCGTCACAGTTGCCTATAAGGATTATGAAAAACCTCCGTGTTTGTGGTGACTGCCACACCGCCTTCAAATATATATCGAAGATTGTTGGTAGGCAAATAGTATTGCGAGACTCAAACAGATTTCATCATTTTGCAGATGGCAAGTGCTCGTGCGGGGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

1076

Amino Acids

119.48

Weight (kDa)

7.67

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	145 - 192	3.6e-08	PPR repeat family
PPR_2	PF13041	250 - 301	2.3e-12	PPR repeat family
PPR	PF01535	252 - 282	6.5e-07	PPR repeat
PPR_2	PF13041	462 - 509	3.9e-06	PPR repeat family
PPR_2	PF13041	666 - 713	4.3e-07	PPR repeat family
PPR_2	PF13041	767 - 814	2.2e-12	PPR repeat family
PPR	PF01535	769 - 798	4.2e-08	PPR repeat
E_motif	PF20431	888 - 947	1.3e-20	E motif
Eplus_motif	PF20430	953 - 977	7.5e-07	E+ motif
DYW_deaminase	PF14432	984 - 1075	5.1e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09950 AT5G09950 AT5G09950
fragaria_vesca	FvH4_6g40670
malus_domestica	MD09G1126300.v1.1
prunus_persica	Prupe.3G198300_v2.0.a1
pyrus_communis	pycom09g05060
rosa_chinensis	RchiOBHm_Chr2g0156061 RchiOBHm_Chr2g0156111
rosa_laevigata	RLG00000020884 RLG00000020888
rosa_multiflora	Rmu_sc0000260.1_g000021 Rmu_sc0011922.1_g000009
rosa_roxburghii	Rroxscaffold_2G00093230
rosa_rugosa	Rorug02G0451500
rosa_samantha	Rh2AG518400 Rh2BG529500 Rh2CG503100 Rh2DG538700
rosa_wichuraiana	Rw2G042680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccI	GTMKAC	1 cut(s)	470
AccII	CGCG	6 cut(s)	118, 120, 283, 299, 2375, 2788
AccIII	TCCGGA	1 cut(s)	1846
AclWI	GGATC	4 cut(s)	157, 237, 648, 1547
AcoI	YGGCCR	2 cut(s)	2644, 2778
AcsI	RAATTY	7 cut(s)	748, 966, 1211, 1492, 1702, 2314, 2969
AcuI	CTGAAG	3 cut(s)	917, 1155, 2939
AfaI	GTAC	6 cut(s)	191, 286, 872, 1755, 2240, 2496
AfiI	CCNNNNNNNGG	5 cut(s)	226, 1638, 1713, 1853, 2787
AflII	CTTAAG	2 cut(s)	106, 599
AflIII	ACRYGT	1 cut(s)	2235
AhdI	GACNNNNNGTC	1 cut(s)	1693
AjnI	CCWGG	2 cut(s)	576, 947
AloI	GAACNNNNNNTCC	4 cut(s)	1236, 1268, 2154, 2186
Alw21I	GWGCWC	4 cut(s)	2046, 2227, 2523, 3209
Alw26I	GTCTC	4 cut(s)	808, 2359, 2871, 3162
Alw44I	GTGCAC	1 cut(s)	2223
AlwI	GGATC	4 cut(s)	157, 237, 648, 1547
AlwNI	CAGNNNCTG	2 cut(s)	806, 1751
Ama87I	CYCGRG	1 cut(s)	823
Aor13HI	TCCGGA	1 cut(s)	1846
AoxI	GGCC	4 cut(s)	701, 1855, 2644, 2778
ApaLI	GTGCAC	1 cut(s)	2223
ApeKI	GCWGC	2 cut(s)	9, 2684
ApoI	RAATTY	7 cut(s)	748, 966, 1211, 1492, 1702, 2314, 2969
AseI	ATTAAT	2 cut(s)	1344, 1502
Asp700I	GAANNNNTTC	1 cut(s)	2466
AspA2I	CCTAGG	1 cut(s)	2510
AspLEI	GCGC	7 cut(s)	120, 122, 301, 1340, 2377, 2788, 2977
AspS9I	GGNCC	3 cut(s)	587, 701, 1855
AsuC2I	CCSGG	2 cut(s)	722, 2891
AsuHPI	GGTGA	5 cut(s)	806, 1117, 2462, 2833, 3119
AsuII	TTCGAA	1 cut(s)	2478
AvaI	CYCGRG	1 cut(s)	823
AvaII	GGWCC	1 cut(s)	587
AvrII	CCTAGG	1 cut(s)	2510
BaeGI	GKGCMC	2 cut(s)	505, 2227
BaeI	ACNNNNGTAYC	2 cut(s)	268, 301
BalI	TGGCCA	1 cut(s)	2780
BanII	GRGCYC	1 cut(s)	2046
BauI	CACGAG	1 cut(s)	3208
Bbv12I	GWGCWC	4 cut(s)	2046, 2227, 2523, 3209
BbvI	GCAGC	1 cut(s)	2671
BccI	CCATC	6 cut(s)	511, 1087, 2509, 2785, 2846, 3191
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	6 cut(s)	397, 431, 1886, 1920, 3017, 3051
BciT130I	CCWGG	2 cut(s)	578, 949
BciVI	GTATCC	1 cut(s)	2021
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	2 cut(s)	722, 2891
BcoDI	GTCTC	4 cut(s)	808, 2359, 2871, 3162
BfaI	CTAG	7 cut(s)	540, 591, 1038, 1977, 2511, 2652, 2672
BfmI	CTRYAG	2 cut(s)	894, 1872
BfoI	RGCGCY	1 cut(s)	1341
BfrI	CTTAAG	2 cut(s)	106, 599
BfuI	GTATCC	1 cut(s)	2021
BisI	GCNGC	5 cut(s)	10, 87, 90, 206, 2685
BlnI	CCTAGG	1 cut(s)	2510
BlsI	GCNGC	5 cut(s)	11, 88, 91, 207, 2686
Bme1390I	CCNGG	4 cut(s)	578, 722, 949, 2891
Bme18I	GGWCC	1 cut(s)	587
BmeRI	GACNNNNNGTC	1 cut(s)	1693
BmeT110I	CYCGRG	1 cut(s)	823
BmgT120I	GGNCC	3 cut(s)	587, 701, 1855
BmiI	GGNNCC	3 cut(s)	702, 2508, 2709
BmrFI	CCNGG	4 cut(s)	578, 722, 949, 2891
BmrI	ACTGGG	1 cut(s)	1647
BmuI	ACTGGG	1 cut(s)	1647
BpmI	CTGGAG	1 cut(s)	2778
Bpu10I	CCTNAGC	1 cut(s)	3014
Bpu14I	TTCGAA	1 cut(s)	2478
BpuMI	CCSGG	2 cut(s)	722, 2891
BsaAI	YACGTR	2 cut(s)	1264, 2731
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	3 cut(s)	2058, 2510, 2781
BsaWI	WCCGGW	1 cut(s)	1846
Bsc4I	CCNNNNNNNGG	5 cut(s)	226, 1638, 1713, 1853, 2787
Bse1I	ACTGG	6 cut(s)	247, 1317, 1642, 2291, 2508, 3227
Bse3DI	GCAATG	1 cut(s)	2802
Bse8I	GATNNNNATC	1 cut(s)	228
BseAI	TCCGGA	1 cut(s)	1846
BseBI	CCWGG	2 cut(s)	578, 949
BseDI	CCNNGG	3 cut(s)	2058, 2510, 2781
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	5 cut(s)	226, 1638, 1713, 1853, 2787
BseMI	GCAATG	1 cut(s)	2802
BseMII	CTCAG	5 cut(s)	1371, 1977, 2140, 2354, 3005
BseNI	ACTGG	6 cut(s)	247, 1317, 1642, 2291, 2508, 3227
BsePI	GCGCGC	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	1134
BseSI	GKGCMC	2 cut(s)	505, 2227
BseXI	GCAGC	1 cut(s)	2671
BseYI	CCCAGC	1 cut(s)	1852
Bsh1236I	CGCG	6 cut(s)	118, 120, 283, 299, 2375, 2788
BshFI	GGCC	4 cut(s)	703, 1857, 2646, 2780
BsiHKAI	GWGCWC	4 cut(s)	2046, 2227, 2523, 3209
BsiHKCI	CYCGRG	1 cut(s)	823
BsiSI	CCGG	4 cut(s)	721, 1679, 1847, 2891
BslFI	GGGAC	4 cut(s)	290, 1563, 1596, 2364
BslI	CCNNNNNNNGG	5 cut(s)	226, 1638, 1713, 1853, 2787
BsmAI	GTCTC	4 cut(s)	808, 2359, 2871, 3162
BsmFI	GGGAC	4 cut(s)	290, 1563, 1596, 2364
BsmI	GAATGC	6 cut(s)	1075, 1658, 1815, 1921, 2017, 2305
BsnI	GGCC	4 cut(s)	703, 1857, 2646, 2780
BsoBI	CYCGRG	1 cut(s)	823
Bsp119I	TTCGAA	1 cut(s)	2478
Bsp1286I	GDGCHC	5 cut(s)	505, 2046, 2227, 2523, 3209
Bsp13I	TCCGGA	1 cut(s)	1846
Bsp1407I	TGTACA	1 cut(s)	1753
Bsp143I	GATC	9 cut(s)	162, 184, 229, 640, 1472, 1539, 2404, 2539, 2983
Bsp19I	CCATGG	1 cut(s)	2058
BspANI	GGCC	4 cut(s)	703, 1857, 2646, 2780
BspCNI	CTCAG	5 cut(s)	1370, 1978, 2139, 2355, 3006
BspEI	TCCGGA	1 cut(s)	1846
BspFNI	CGCG	6 cut(s)	118, 120, 283, 299, 2375, 2788
BspLI	GGNNCC	3 cut(s)	702, 2508, 2709
BspMAI	CTGCAG	1 cut(s)	898
BspPI	GGATC	4 cut(s)	157, 237, 648, 1547
BspQI	GCTCTTC	1 cut(s)	1620
BspT104I	TTCGAA	1 cut(s)	2478
BspTI	CTTAAG	2 cut(s)	106, 599
BsrDI	GCAATG	1 cut(s)	2802
BsrGI	TGTACA	1 cut(s)	1753
BsrI	ACTGG	6 cut(s)	247, 1317, 1642, 2291, 2508, 3227
BssECI	CCNNGG	3 cut(s)	2058, 2510, 2781
BssHII	GCGCGC	1 cut(s)	118
BssMI	GATC	9 cut(s)	162, 184, 229, 640, 1472, 1539, 2404, 2539, 2983
BssNAI	GTATAC	1 cut(s)	471
BssSI	CACGAG	1 cut(s)	3208
BssT1I	CCWWGG	3 cut(s)	2058, 2510, 2781
Bst1107I	GTATAC	1 cut(s)	471
Bst2BI	CACGAG	1 cut(s)	3208
Bst2UI	CCWGG	2 cut(s)	578, 949
Bst4CI	ACNGT	7 cut(s)	59, 842, 1904, 1961, 2122, 2629, 3069
Bst6I	CTCTTC	2 cut(s)	1240, 1620
BstAFI	CTTAAG	2 cut(s)	106, 599
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstAUI	TGTACA	1 cut(s)	1753
BstBAI	YACGTR	2 cut(s)	1264, 2731
BstBI	TTCGAA	1 cut(s)	2478
BstDEI	CTNAG	6 cut(s)	1357, 1646, 1986, 2126, 2363, 3014
BstDSI	CCRYGG	1 cut(s)	2058
BstEII	GGTNACC	1 cut(s)	2839
BstFNI	CGCG	6 cut(s)	118, 120, 283, 299, 2375, 2788
BstH2I	RGCGCY	1 cut(s)	1341
BstHHI	GCGC	7 cut(s)	120, 122, 301, 1340, 2377, 2788, 2977
BstKTI	GATC	9 cut(s)	165, 187, 232, 643, 1475, 1542, 2407, 2542, 2986
BstMAI	GTCTC	4 cut(s)	808, 2359, 2871, 3162
BstMBI	GATC	9 cut(s)	162, 184, 229, 640, 1472, 1539, 2404, 2539, 2983
BstNI	CCWGG	2 cut(s)	578, 949
BstNSI	RCATGY	5 cut(s)	412, 487, 832, 2181, 2239
BstPI	GGTNACC	1 cut(s)	2839
BstSCI	CCNGG	4 cut(s)	576, 720, 947, 2889
BstSFI	CTRYAG	2 cut(s)	894, 1872
BstSLI	GKGCMC	2 cut(s)	505, 2227
BstSNI	TACGTA	1 cut(s)	1264
BstUI	CGCG	6 cut(s)	118, 120, 283, 299, 2375, 2788
BstV1I	GCAGC	1 cut(s)	2671
BstXI	CCANNNNNNTGG	3 cut(s)	584, 2059, 2065
BstZ17I	GTATAC	1 cut(s)	471
BsuI	GTATCC	1 cut(s)	2021
BsuRI	GGCC	4 cut(s)	703, 1857, 2646, 2780
BtgI	CCRYGG	1 cut(s)	2058
BtsI	GCAGTG	1 cut(s)	1080
BtsIMutI	CAGTG	8 cut(s)	240, 1080, 1131, 1608, 1635, 2134, 2298, 2318
CaiI	CAGNNNCTG	2 cut(s)	806, 1751
CfoI	GCGC	7 cut(s)	120, 122, 301, 1340, 2377, 2788, 2977
Cfr13I	GGNCC	3 cut(s)	587, 701, 1855
CseI	GACGC	2 cut(s)	305, 1358
Csp6I	GTAC	6 cut(s)	190, 285, 871, 1754, 2239, 2495
CspCI	CAANNNNNGTGG	2 cut(s)	1766, 1801
CviQI	GTAC	6 cut(s)	190, 285, 871, 1754, 2239, 2495
DdeI	CTNAG	6 cut(s)	1357, 1646, 1986, 2126, 2363, 3014
DpnI	GATC	9 cut(s)	164, 186, 231, 642, 1474, 1541, 2406, 2541, 2985
DpnII	GATC	9 cut(s)	162, 184, 229, 640, 1472, 1539, 2404, 2539, 2983
DraI	TTTAAA	1 cut(s)	511
DriI	GACNNNNNGTC	1 cut(s)	1693
EaeI	YGGCCR	2 cut(s)	2644, 2778
Eam1104I	CTCTTC	2 cut(s)	1240, 1620
Eam1105I	GACNNNNNGTC	1 cut(s)	1693
EarI	CTCTTC	2 cut(s)	1240, 1620
Ecl136II	GAGCTC	1 cut(s)	2044
Eco105I	TACGTA	1 cut(s)	1264
Eco130I	CCWWGG	3 cut(s)	2058, 2510, 2781
Eco24I	GRGCYC	1 cut(s)	2046
Eco32I	GATATC	2 cut(s)	630, 2325
Eco47I	GGWCC	1 cut(s)	587
Eco53kI	GAGCTC	1 cut(s)	2044
Eco57I	CTGAAG	3 cut(s)	917, 1155, 2939
Eco88I	CYCGRG	1 cut(s)	823
Eco91I	GGTNACC	1 cut(s)	2839
EcoICRI	GAGCTC	1 cut(s)	2044
EcoO109I	RGGNCCY	1 cut(s)	701
EcoO65I	GGTNACC	1 cut(s)	2839
EcoRI	GAATTC	2 cut(s)	1702, 2314
EcoRII	CCWGG	2 cut(s)	576, 947
EcoRV	GATATC	2 cut(s)	630, 2325
EcoT14I	CCWWGG	3 cut(s)	2058, 2510, 2781
EcoT22I	ATGCAT	2 cut(s)	1261, 2179
EcoT38I	GRGCYC	1 cut(s)	2046
ErhI	CCWWGG	3 cut(s)	2058, 2510, 2781
FalI	AAGNNNNNCTT	2 cut(s)	376, 408
FaqI	GGGAC	4 cut(s)	290, 1563, 1596, 2364
FauI	CCCGC	2 cut(s)	2174, 3206
FauNDI	CATATG	2 cut(s)	250, 3046
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	5 cut(s)	10, 87, 90, 206, 2685
FriOI	GRGCYC	1 cut(s)	2046
Fsp4HI	GCNGC	5 cut(s)	10, 87, 90, 206, 2685
FspBI	CTAG	7 cut(s)	540, 591, 1038, 1977, 2511, 2652, 2672
GlaI	GCGC	7 cut(s)	119, 121, 300, 1339, 2376, 2787, 2976
GluI	GCNGC	5 cut(s)	10, 87, 90, 206, 2685
GsaI	CCCAGC	1 cut(s)	1856
GsuI	CTGGAG	1 cut(s)	2778
HaeII	RGCGCY	1 cut(s)	1341
HaeIII	GGCC	4 cut(s)	703, 1857, 2646, 2780
HapII	CCGG	4 cut(s)	721, 1679, 1847, 2891
HgaI	GACGC	2 cut(s)	305, 1358
HhaI	GCGC	7 cut(s)	120, 122, 301, 1340, 2377, 2788, 2977
Hin6I	GCGC	7 cut(s)	118, 120, 299, 1338, 2375, 2786, 2975
HinP1I	GCGC	7 cut(s)	118, 120, 299, 1338, 2375, 2786, 2975
HincII	GTYRAC	1 cut(s)	2233
HindII	GTYRAC	1 cut(s)	2233
HindIII	AAGCTT	4 cut(s)	596, 815, 1528, 3032
HpaII	CCGG	4 cut(s)	721, 1679, 1847, 2891
HphI	GGTGA	5 cut(s)	806, 1117, 2462, 2833, 3119
Hpy166II	GTNNAC	8 cut(s)	192, 376, 471, 873, 1453, 2109, 2225, 2233
Hpy8I	GTNNAC	8 cut(s)	192, 376, 471, 873, 1453, 2109, 2225, 2233
Hpy99I	CGWCG	1 cut(s)	299
HpyCH4III	ACNGT	7 cut(s)	59, 842, 1904, 1961, 2122, 2629, 3069
HpyCH4IV	ACGT	4 cut(s)	378, 1263, 2158, 2730
HpyF3I	CTNAG	6 cut(s)	1357, 1646, 1986, 2126, 2363, 3014
HpySE526I	ACGT	4 cut(s)	378, 1263, 2158, 2730
HspAI	GCGC	7 cut(s)	118, 120, 299, 1338, 2375, 2786, 2975
Kpn2I	TCCGGA	1 cut(s)	1846
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	9 cut(s)	162, 184, 229, 640, 1472, 1539, 2404, 2539, 2983
LguI	GCTCTTC	1 cut(s)	1620
LmnI	GCTCC	4 cut(s)	1789, 1849, 2512, 2518
Lsp1109I	GCAGC	1 cut(s)	2671
MaeI	CTAG	7 cut(s)	540, 591, 1038, 1977, 2511, 2652, 2672
MaeII	ACGT	4 cut(s)	378, 1263, 2158, 2730
MaeIII	GTNAC	7 cut(s)	442, 1460, 1801, 2410, 2839, 3063, 3107
MalI	GATC	9 cut(s)	164, 186, 231, 642, 1474, 1541, 2406, 2541, 2985
MboI	GATC	9 cut(s)	162, 184, 229, 640, 1472, 1539, 2404, 2539, 2983
MhlI	GDGCHC	5 cut(s)	505, 2046, 2227, 2523, 3209
MlsI	TGGCCA	1 cut(s)	2780
MluNI	TGGCCA	1 cut(s)	2780
MlyI	GAGTC	5 cut(s)	272, 590, 1069, 2096, 3164
MmeI	TCCRAC	5 cut(s)	1144, 1656, 1988, 2197, 2685
Mox20I	TGGCCA	1 cut(s)	2780
Mph1103I	ATGCAT	2 cut(s)	1261, 2179
MroI	TCCGGA	1 cut(s)	1846
MroXI	GAANNNNTTC	1 cut(s)	2466
MscI	TGGCCA	1 cut(s)	2780
MslI	CAYNNNNRTG	1 cut(s)	1148
Msp20I	TGGCCA	1 cut(s)	2780
MspCI	CTTAAG	2 cut(s)	106, 599
MspI	CCGG	4 cut(s)	721, 1679, 1847, 2891
MspR9I	CCNGG	4 cut(s)	578, 722, 949, 2891
Mva1269I	GAATGC	6 cut(s)	1075, 1658, 1815, 1921, 2017, 2305
MvaI	CCWGG	2 cut(s)	578, 949
MvnI	CGCG	6 cut(s)	118, 120, 283, 299, 2375, 2788
NciI	CCSGG	2 cut(s)	722, 2891
NcoI	CCATGG	1 cut(s)	2058
NdeI	CATATG	2 cut(s)	250, 3046
NdeII	GATC	9 cut(s)	162, 184, 229, 640, 1472, 1539, 2404, 2539, 2983
NlaIV	GGNNCC	3 cut(s)	702, 2508, 2709
NmeAIII	GCCGAG	1 cut(s)	2672
NmuCI	GTSAC	4 cut(s)	1460, 2839, 3063, 3107
NsiI	ATGCAT	2 cut(s)	1261, 2179
NspI	RCATGY	5 cut(s)	412, 487, 832, 2181, 2239
NspV	TTCGAA	1 cut(s)	2478
PaeI	GCATGC	4 cut(s)	412, 487, 832, 2181
PaeR7I	CTCGAG	1 cut(s)	823
PauI	GCGCGC	1 cut(s)	118
PciI	ACATGT	1 cut(s)	2235
PciSI	GCTCTTC	1 cut(s)	1620
PctI	GAATGC	6 cut(s)	1075, 1658, 1815, 1921, 2017, 2305
PdmI	GAANNNNTTC	1 cut(s)	2466
PfeI	GAWTC	7 cut(s)	270, 914, 1178, 1864, 2201, 2282, 2480
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	5 cut(s)	11, 88, 91, 207, 2686
PleI	GAGTC	5 cut(s)	272, 589, 1068, 2096, 3164
PpsI	GAGTC	5 cut(s)	272, 589, 1068, 2096, 3164
Ppu21I	YACGTR	2 cut(s)	1264, 2731
PscI	ACATGT	1 cut(s)	2235
PshBI	ATTAAT	2 cut(s)	1344, 1502
Psp124BI	GAGCTC	1 cut(s)	2046
Psp6I	CCWGG	2 cut(s)	576, 947
PspEI	GGTNACC	1 cut(s)	2839
PspFI	CCCAGC	1 cut(s)	1852
PspGI	CCWGG	2 cut(s)	576, 947
PspN4I	GGNNCC	3 cut(s)	702, 2508, 2709
PspPI	GGNCC	3 cut(s)	587, 701, 1855
PstI	CTGCAG	1 cut(s)	898
PstNI	CAGNNNCTG	2 cut(s)	806, 1751
PteI	GCGCGC	1 cut(s)	118
RsaI	GTAC	6 cut(s)	191, 286, 872, 1755, 2240, 2496
RsaNI	GTAC	6 cut(s)	190, 285, 871, 1754, 2239, 2495
RseI	CAYNNNNRTG	1 cut(s)	1148
SacI	GAGCTC	1 cut(s)	2046
SapI	GCTCTTC	1 cut(s)	1620
SatI	GCNGC	5 cut(s)	10, 87, 90, 206, 2685
Sau3AI	GATC	9 cut(s)	162, 184, 229, 640, 1472, 1539, 2404, 2539, 2983
Sau96I	GGNCC	3 cut(s)	587, 701, 1855
SchI	GAGTC	5 cut(s)	272, 590, 1069, 2096, 3164
ScrFI	CCNGG	4 cut(s)	578, 722, 949, 2891
SduI	GDGCHC	5 cut(s)	505, 2046, 2227, 2523, 3209
SfcI	CTRYAG	2 cut(s)	894, 1872
Sfr274I	CTCGAG	1 cut(s)	823
SfuI	TTCGAA	1 cut(s)	2478
SinI	GGWCC	1 cut(s)	587
SlaI	CTCGAG	1 cut(s)	823
SmiMI	CAYNNNNRTG	1 cut(s)	1148
SmlI	CTYRAG	3 cut(s)	106, 599, 823
SmoI	CTYRAG	3 cut(s)	106, 599, 823
SnaBI	TACGTA	1 cut(s)	1264
SphI	GCATGC	4 cut(s)	412, 487, 832, 2181
SspI	AATATT	2 cut(s)	1045, 1760
SspMI	CTAG	7 cut(s)	540, 591, 1038, 1977, 2511, 2652, 2672
SstI	GAGCTC	1 cut(s)	2046
StyD4I	CCNGG	4 cut(s)	576, 720, 947, 2889
StyI	CCWWGG	3 cut(s)	2058, 2510, 2781
TaaI	ACNGT	7 cut(s)	59, 842, 1904, 1961, 2122, 2629, 3069
TaiI	ACGT	4 cut(s)	381, 1266, 2161, 2733
TaqI	TCGA	8 cut(s)	268, 417, 568, 824, 1593, 1896, 2478, 3137
TatI	WGTACW	5 cut(s)	189, 870, 1753, 2238, 2494
TauI	GCSGC	3 cut(s)	89, 92, 208
TfiI	GAWTC	7 cut(s)	270, 914, 1178, 1864, 2201, 2282, 2480
TscAI	CASTG	8 cut(s)	247, 1080, 1138, 1608, 1642, 2134, 2298, 2325
TseFI	GTSAC	4 cut(s)	1460, 2839, 3063, 3107
TseI	GCWGC	2 cut(s)	9, 2684
Tsp45I	GTSAC	4 cut(s)	1460, 2839, 3063, 3107
TspGWI	ACGGA	4 cut(s)	529, 653, 1448, 3086
TspRI	CASTG	8 cut(s)	247, 1080, 1138, 1608, 1642, 2134, 2298, 2325
Van91I	CCANNNNNTGG	1 cut(s)	226
Vha464I	CTTAAG	2 cut(s)	106, 599
VneI	GTGCAC	1 cut(s)	2223
VpaK11BI	GGWCC	1 cut(s)	587
VspI	ATTAAT	2 cut(s)	1344, 1502
XapI	RAATTY	7 cut(s)	748, 966, 1211, 1492, 1702, 2314, 2969
XbaI	TCTAGA	1 cut(s)	1976
XceI	RCATGY	5 cut(s)	412, 487, 832, 2181, 2239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2788
XhoI	CTCGAG	1 cut(s)	823
XmaJI	CCTAGG	1 cut(s)	2510
XmiI	GTMKAC	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	2466
XspI	CTAG	7 cut(s)	540, 591, 1038, 1977, 2511, 2652, 2672
Zsp2I	ATGCAT	2 cut(s)	1261, 2179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.