Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011231

Physical Location & Seq

Genomic Coordinates Forward (+)

69834517 .. 69837648

Gene Structure 3132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020888

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2820 bp

ATGTTTCGCTCTTTCCTCACTCACAAAGGAAAACTCCACCGTTCACACCCTGCTTTCACTTCTCTCACCGCCTCACCTCTCGTCTCAAACTCAGTTCACCACATCCAATCATCTCGGCCCCACATCGAAACCCCACCCCCACATTCCGATGCAACTTACGGTTATCTTCTCAATCGGTTCAAGGACTCCCGTACCTCAAATGAAGCCGAAAGCTTTCATTTGCGGATTTTCAAACATGGCTTCACTCAAGATTTGTTCTTGTGCAATACCCTTATCAACGTTTATGTCAAAATTGGTGCTTTCGCTAATGCACGTAAGCTGTTCGACGAAATGCCTGAGAAGAACTCGGTTTCTTGGGCTTGCTTGATTTCCGGGTACGCCCGGAGCGGTGTGCCAGAGGAGGCTTGTGTGCATTTTAAAAGGATGGTTTGTGATGGTTTGGTGCCGAGTGTTTATGCTTTTGGGAGTGTTCTAAAGGCTTGCCAGGAGTTGGGCGCTTGCAAGCTTAAGTTTGGGATGCAAATTCATGGGTTGTTATCGAAAATGCATGATTCGGATGTGTTGTTAGCTAATGTGGTGATGTCAATGTATGGGAGATGTTTGGGTTCTGCGGATGATGCTTACCGGGCGTTTTGTGAGATCAAGTTTAGAAATTTAGTGTCTTGGAATTCTATTATTTCGGTTTACTGCCAAAGAGGGGATGCAGTCTCTGCTTATAAGCTTTTCTCAAACATGCAAAGGGATGTTGTGGATTTTGATTTGCAACCGAATGAGTATACTTTCGGTAGCTTGGTACCTGCCTGTTGTGGTTTGGCTGATTCTGGTTTGGTTTTGCTTCAGCAAATGCTGAGCAGGGTCAGCAAAGCTGGATTTTTACAGGACTTGTACGTAGGAAGTGCTTTGGTTAGTGGATTTGCCAGGGTTGGATTAGTCGATTACGCCAGGAAGATTTTTGAGCAGATGGGTGAGAGGAATGTAGTTTCGATGAATGGCTTGATGGTTGGACTGGTGAGGCAGAAGCGAGGAGAAGAAGCCACTCAAGTTTTCATGGAGATGAAGGACTTGGTTGGAATAAATATTGATTCGCTTGTGGTTCTTTTAAGTTCATTCACTGAATTTTCTGCTTTAGAGGAAGGGAAAAGAAAGGGAAGAGAAGTTCATGCATATGTAATTGCAACTGGCTTGATTAACAGCAAGGTTGCAACAGAGAATGGGCTTGTAAATATGTATGCTAAATGTGGTGCTATTGATGATGCTTGTTCAGTTTTCAGGCTCATGGTAGACAGAGACTTAATCTCATGGAACTCTTTGATCTCTGGTCTCGACCAGAATGAGCAGTTTGAAGATGCAGTAATGAAGTTCGGTGAAATGAGAAAATCTGAATTGAAGCCTTCAATTTTCACATTAATTAGTGCTTTGAGTTCATGTGCAAGCTTGGAGTGGATCATGATGGGACAGCAAATACATTGTGAAGCACTTAAATTGGGACTTGATTTGGATGTTTCGGTTTCAAATGCTCTTCTTGCATTGTATTCTGACACAGGGTGTCTTAATGAATCCCAGAATGTTTTCTTCTTGATGCAGGAGTATGACCAAGTGTCGTGGAATTCCATAGTTGGGGCTTTAGCTAGTTCAGAGGCTTCAGTTTTTGAAGCTGTAGAATATTTATTGGAAATGATGCGATCTGGATGGGAACTTAATAGAGTAACATTTATTAGCATTCTTTCAGCAGTTTCATCCCTCTCACTTCACGAGCTAGGCCAGCAGATTCATGCTGTAGTTTTAAAATACAATGCTGCAAAGGACTGTGCTATTGAGAATGCGCTTATTGCTTGCTATGGAAAGTGTGGACAGATAGATGACTGTGAGAAGATATTTTCTAGAATGCCTGAAAGAAGGGATGAAGTAAGTTGGAATTCCATGATTTCTGGATACATACATAATGAGCTCTTGCCTAAGGCCATGGATTTGGTCTGGTTTATGATTGAGAGGGGTCAGAAATTAGACTCTTTTACTTTTGCTACTGTTCTGAGTGCTTGTGCTTCAGTTGCAACATTAGAGCGTGGGATGGAAGTTCATGCTTGTGCGGTAAGAGCTTATTTGGAATCTGATGTTGTAGTTGGGAGTGCACTCGTCGACATGTATTCAAAGTGTGGAAGGATTGATTATGCTTCAAGATTCTTTGAGTTGATGCCAGTAAGGAATGTGTATTCCTGGAATTCATTAATATCAGGATATGCTCGCAATGGAGATGGACAGAAAGCTCTGAGGCTTTTCACACAAATGAAGCAACAAGATCAGCCACCAGATCACGTTACCTTTGTTGGGGTCCTATCAGCTTGTAGCCATGCAGGGCTCGTGGATGAAGGGTTTCAGCATTTCAATTCCATGAGTAAAGTACATGGACTGGCTCCTAGGATGGAGCACTTTTCATGTATGGTTGATCTTCTTGGAAGGGCAGGAAAAATTAATATGATAGAGAACTTCATCAAAAAAATGCCGATGAAGCCTAATGAACTTAACAAGAAAATGAAGGATGCTGGATATGTGCCTGAAACAAAATTTGCACTATATGATCTCGAACTGGAGAACAAGGAAGAACTCCTGAGTTATCACAGTGAAAAGCTTGCTGTTGCATATGTTCTTACTCGCCAGTCACAGTTGCCTATAAGGATTATGAAAAACCTTCGGGTTTGTGGTGACTGCCACACTGCCTTCAAATACATATCAAATATTGTTGGCAGGCAAATAGTATTACGCGATTCAAACAGATTTCATCACTTTCAAGATGGCAAGTGTTCTTGTGGGGATTTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

940

Amino Acids

105.07

Weight (kDa)

6.47

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	114 - 161	2.7e-07	PPR repeat family
PPR_2	PF13041	218 - 269	1.9e-10	PPR repeat family
PPR	PF01535	220 - 247	7.7e-06	PPR repeat
PPR_2	PF13041	430 - 477	1.1e-06	PPR repeat family
PPR_2	PF13041	634 - 681	1.1e-08	PPR repeat family
PPR_2	PF13041	734 - 782	1.1e-12	PPR repeat family
PPR_1	PF12854	734 - 763	7.2e-06	PPR repeat
PPR	PF01535	737 - 764	4.9e-08	PPR repeat
DYW_deaminase	PF14432	848 - 939	5.6e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09950 AT5G09950 AT5G09950
fragaria_vesca	FvH4_6g40670
malus_domestica	MD09G1126300.v1.1
prunus_persica	Prupe.3G198300_v2.0.a1
pyrus_communis	pycom09g05060
rosa_chinensis	RchiOBHm_Chr2g0156061 RchiOBHm_Chr2g0156111
rosa_laevigata	RLG00000020884 RLG00000020888
rosa_multiflora	Rmu_sc0000260.1_g000021 Rmu_sc0011922.1_g000009
rosa_roxburghii	Rroxscaffold_2G00093230
rosa_rugosa	Rorug02G0451500
rosa_samantha	Rh2AG518400 Rh2BG529500 Rh2CG503100 Rh2DG538700
rosa_wichuraiana	Rw2G042680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	717
Acc36I	ACCTGC	1 cut(s)	805
Acc65I	GGTACC	1 cut(s)	793
AccB1I	GGYRCC	2 cut(s)	442, 793
AccB7I	CCANNNNNTGG	1 cut(s)	490
AccBSI	CCGCTC	1 cut(s)	387
AccI	GTMKAC	3 cut(s)	776, 1281, 2136
AccII	CGCG	1 cut(s)	2760
AciI	CCGC	5 cut(s)	69, 223, 387, 611, 2087
AclI	AACGTT	1 cut(s)	279
AclWI	GGATC	1 cut(s)	1451
AcsI	RAATTY	8 cut(s)	522, 652, 667, 1115, 1606, 1915, 2218, 2561
AcuI	CTGAAG	3 cut(s)	821, 1626, 2028
AdeI	CACNNNGTG	1 cut(s)	1545
AfaI	GTAC	5 cut(s)	193, 377, 795, 887, 2400
AfiI	CCNNNNNNNGG	4 cut(s)	490, 697, 1617, 2325
AflII	CTTAAG	1 cut(s)	506
AflIII	ACRYGT	1 cut(s)	2139
AhdI	GACNNNNNGTC	1 cut(s)	1597
AjnI	CCWGG	4 cut(s)	483, 917, 941, 2213
AloI	GAACNNNNNNTCC	2 cut(s)	1140, 1172
Alw21I	GWGCWC	3 cut(s)	1950, 2131, 2427
Alw26I	GTCTC	4 cut(s)	88, 712, 1281, 1325
Alw44I	GTGCAC	1 cut(s)	2127
AlwI	GGATC	1 cut(s)	1451
AlwNI	CAGNNNCTG	1 cut(s)	710
AoxI	GGCC	3 cut(s)	116, 1759, 1959
ApaLI	GTGCAC	1 cut(s)	2127
ApeKI	GCWGC	1 cut(s)	1796
ApoI	RAATTY	8 cut(s)	522, 652, 667, 1115, 1606, 1915, 2218, 2561
AseI	ATTAAT	3 cut(s)	1406, 2225, 2469
Asp700I	GAANNNNTTC	3 cut(s)	213, 1568, 2370
Asp718I	GGTACC	1 cut(s)	793
AspA2I	CCTAGG	1 cut(s)	2414
AspLEI	GCGC	2 cut(s)	497, 1825
AspS9I	GGNCC	2 cut(s)	117, 2329
AsuC2I	CCSGG	3 cut(s)	373, 382, 626
AsuHPI	GGTGA	8 cut(s)	58, 66, 89, 589, 977, 1021, 1376, 2711
AvaII	GGWCC	1 cut(s)	2329
AvrII	CCTAGG	1 cut(s)	2414
AxyI	CCTNAGG	1 cut(s)	1956
BaeGI	GKGCMC	1 cut(s)	2131
BaeI	ACNNNNGTAYC	2 cut(s)	175, 208
BanI	GGYRCC	2 cut(s)	442, 793
BanII	GRGCYC	2 cut(s)	1950, 2358
BauI	CACGAG	2 cut(s)	1751, 2357
Bbv12I	GWGCWC	3 cut(s)	1950, 2131, 2427
BbvI	GCAGC	1 cut(s)	1783
BciT130I	CCWGG	4 cut(s)	485, 919, 943, 2215
BciVI	GTATCC	1 cut(s)	1925
BcnI	CCSGG	3 cut(s)	373, 382, 626
BcoDI	GTCTC	4 cut(s)	88, 712, 1281, 1325
BfaI	CTAG	4 cut(s)	1629, 1757, 1881, 2415
BfmI	CTRYAG	2 cut(s)	1656, 1776
BfoI	RGCGCY	1 cut(s)	498
BfrI	CTTAAG	1 cut(s)	506
BfuAI	ACCTGC	1 cut(s)	805
BfuI	GTATCC	1 cut(s)	1925
BisI	GCNGC	1 cut(s)	1797
BlnI	CCTAGG	1 cut(s)	2414
BlpI	GCTNAGC	1 cut(s)	848
BlsI	GCNGC	1 cut(s)	1798
Bme1390I	CCNGG	7 cut(s)	373, 382, 485, 626, 919, 943, 2215
Bme18I	GGWCC	1 cut(s)	2329
BmeRI	GACNNNNNGTC	1 cut(s)	1597
BmgT120I	GGNCC	2 cut(s)	117, 2329
BmiI	GGNNCC	5 cut(s)	119, 444, 795, 2330, 2412
BmrFI	CCNGG	7 cut(s)	373, 382, 485, 626, 919, 943, 2215
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
BpmI	CTGGAG	1 cut(s)	2606
Bpu1102I	GCTNAGC	1 cut(s)	848
BpuEI	CTTGAG	2 cut(s)	231, 1023
BpuMI	CCSGG	3 cut(s)	373, 382, 626
BsaAI	YACGTR	2 cut(s)	314, 889
BsaI	GGTCTC	1 cut(s)	1325
BsaJI	CCNNGG	3 cut(s)	918, 1962, 2414
Bsc4I	CCNNNNNNNGG	4 cut(s)	490, 697, 1617, 2325
Bse1I	ACTGG	6 cut(s)	1011, 1183, 2195, 2412, 2589, 2653
Bse21I	CCTNAGG	1 cut(s)	1956
Bse3DI	GCAATG	1 cut(s)	2251
BseBI	CCWGG	4 cut(s)	485, 919, 943, 2215
BseDI	CCNNGG	3 cut(s)	918, 1962, 2414
BseLI	CCNNNNNNNGG	4 cut(s)	490, 697, 1617, 2325
BseMI	GCAATG	1 cut(s)	2251
BseMII	CTCAG	6 cut(s)	105, 327, 839, 2021, 2258, 2597
BseNI	ACTGG	6 cut(s)	1011, 1183, 2195, 2412, 2589, 2653
BseRI	GAGGAG	2 cut(s)	413, 1038
BseSI	GKGCMC	1 cut(s)	2131
BseXI	GCAGC	1 cut(s)	1783
Bsh1236I	CGCG	1 cut(s)	2760
BshFI	GGCC	3 cut(s)	118, 1761, 1961
BshNI	GGYRCC	2 cut(s)	442, 793
BsiHKAI	GWGCWC	3 cut(s)	1950, 2131, 2427
BsiSI	CCGG	3 cut(s)	372, 382, 625
BslFI	GGGAC	2 cut(s)	1467, 1500
BslI	CCNNNNNNNGG	4 cut(s)	490, 697, 1617, 2325
BsmAI	GTCTC	4 cut(s)	88, 712, 1281, 1325
BsmBI	CGTCTC	1 cut(s)	88
BsmFI	GGGAC	2 cut(s)	1467, 1500
BsmI	GAATGC	3 cut(s)	1719, 1825, 1890
BsnI	GGCC	3 cut(s)	118, 1761, 1961
Bso31I	GGTCTC	1 cut(s)	1325
Bsp1286I	GDGCHC	4 cut(s)	1950, 2131, 2358, 2427
Bsp143I	GATC	8 cut(s)	639, 1311, 1443, 1682, 2296, 2308, 2443, 2575
Bsp1720I	GCTNAGC	1 cut(s)	848
Bsp19I	CCATGG	1 cut(s)	1962
BspACI	CCGC	5 cut(s)	69, 223, 387, 611, 2087
BspANI	GGCC	3 cut(s)	118, 1761, 1961
BspCNI	CTCAG	6 cut(s)	104, 328, 840, 2022, 2259, 2598
BspFNI	CGCG	1 cut(s)	2760
BspHI	TCATGA	1 cut(s)	1446
BspLI	GGNNCC	5 cut(s)	119, 444, 795, 2330, 2412
BspMI	ACCTGC	1 cut(s)	805
BspPI	GGATC	1 cut(s)	1451
BspQI	GCTCTTC	1 cut(s)	1524
BspT107I	GGYRCC	2 cut(s)	442, 793
BspTI	CTTAAG	1 cut(s)	506
BspTNI	GGTCTC	1 cut(s)	1325
BsrBI	CCGCTC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	2251
BsrI	ACTGG	6 cut(s)	1011, 1183, 2195, 2412, 2589, 2653
BssECI	CCNNGG	3 cut(s)	918, 1962, 2414
BssMI	GATC	8 cut(s)	639, 1311, 1443, 1682, 2296, 2308, 2443, 2575
BssNAI	GTATAC	1 cut(s)	777
BssSI	CACGAG	2 cut(s)	1751, 2357
BssT1I	CCWWGG	2 cut(s)	1962, 2414
Bst1107I	GTATAC	1 cut(s)	777
Bst2BI	CACGAG	2 cut(s)	1751, 2357
Bst2UI	CCWGG	4 cut(s)	485, 919, 943, 2215
Bst4CI	ACNGT	7 cut(s)	41, 161, 1808, 1865, 2026, 2618, 2661
Bst6I	CTCTTC	2 cut(s)	1144, 1524
BstAFI	CTTAAG	1 cut(s)	506
BstAPI	GCANNNNNTGC	1 cut(s)	710
BstBAI	YACGTR	2 cut(s)	314, 889
BstDEI	CTNAG	7 cut(s)	91, 336, 848, 1956, 2030, 2267, 2606
BstDSI	CCRYGG	1 cut(s)	1962
BstFNI	CGCG	1 cut(s)	2760
BstH2I	RGCGCY	1 cut(s)	498
BstHHI	GCGC	2 cut(s)	497, 1825
BstKTI	GATC	8 cut(s)	642, 1314, 1446, 1685, 2299, 2311, 2446, 2578
BstMAI	GTCTC	4 cut(s)	88, 712, 1281, 1325
BstMBI	GATC	8 cut(s)	639, 1311, 1443, 1682, 2296, 2308, 2443, 2575
BstNI	CCWGG	4 cut(s)	485, 919, 943, 2215
BstNSI	RCATGY	2 cut(s)	736, 2143
BstSCI	CCNGG	7 cut(s)	371, 380, 483, 624, 917, 941, 2213
BstSFI	CTRYAG	2 cut(s)	1656, 1776
BstSLI	GKGCMC	1 cut(s)	2131
BstSNI	TACGTA	1 cut(s)	889
BstUI	CGCG	1 cut(s)	2760
BstV1I	GCAGC	1 cut(s)	1783
BstXI	CCANNNNNNTGG	1 cut(s)	1969
BstZ17I	GTATAC	1 cut(s)	777
Bsu36I	CCTNAGG	1 cut(s)	1956
BsuI	GTATCC	1 cut(s)	1925
BsuRI	GGCC	3 cut(s)	118, 1761, 1961
BtgI	CCRYGG	1 cut(s)	1962
BtsI	GCAGTG	1 cut(s)	2709
BtsIMutI	CAGTG	3 cut(s)	1110, 2623, 2709
BveI	ACCTGC	1 cut(s)	805
CaiI	CAGNNNCTG	1 cut(s)	710
CciI	TCATGA	1 cut(s)	1446
CfoI	GCGC	2 cut(s)	497, 1825
Cfr13I	GGNCC	2 cut(s)	117, 2329
Csp6I	GTAC	5 cut(s)	192, 376, 794, 886, 2399
CspCI	CAANNNNNGTGG	2 cut(s)	1583, 1618
CviQI	GTAC	5 cut(s)	192, 376, 794, 886, 2399
DdeI	CTNAG	7 cut(s)	91, 336, 848, 1956, 2030, 2267, 2606
DpnI	GATC	8 cut(s)	641, 1313, 1445, 1684, 2298, 2310, 2445, 2577
DpnII	GATC	8 cut(s)	639, 1311, 1443, 1682, 2296, 2308, 2443, 2575
DraI	TTTAAA	2 cut(s)	418, 1785
DraIII	CACNNNGTG	1 cut(s)	1545
DriI	GACNNNNNGTC	1 cut(s)	1597
Eam1104I	CTCTTC	2 cut(s)	1144, 1524
Eam1105I	GACNNNNNGTC	1 cut(s)	1597
EarI	CTCTTC	2 cut(s)	1144, 1524
Ecl136II	GAGCTC	1 cut(s)	1948
Eco105I	TACGTA	1 cut(s)	889
Eco130I	CCWWGG	2 cut(s)	1962, 2414
Eco24I	GRGCYC	2 cut(s)	1950, 2358
Eco31I	GGTCTC	1 cut(s)	1325
Eco47I	GGWCC	1 cut(s)	2329
Eco53kI	GAGCTC	1 cut(s)	1948
Eco57I	CTGAAG	3 cut(s)	821, 1626, 2028
Eco81I	CCTNAGG	1 cut(s)	1956
EcoICRI	GAGCTC	1 cut(s)	1948
EcoO109I	RGGNCCY	1 cut(s)	2329
EcoRI	GAATTC	4 cut(s)	667, 1606, 1915, 2218
EcoRII	CCWGG	4 cut(s)	483, 917, 941, 2213
EcoT14I	CCWWGG	2 cut(s)	1962, 2414
EcoT22I	ATGCAT	2 cut(s)	549, 1165
EcoT38I	GRGCYC	2 cut(s)	1950, 2358
ErhI	CCWWGG	2 cut(s)	1962, 2414
Esp3I	CGTCTC	1 cut(s)	88
FaqI	GGGAC	2 cut(s)	1467, 1500
FauNDI	CATATG	2 cut(s)	1165, 2638
FblI	GTMKAC	3 cut(s)	776, 1281, 2136
Fnu4HI	GCNGC	1 cut(s)	1797
FriOI	GRGCYC	2 cut(s)	1950, 2358
Fsp4HI	GCNGC	1 cut(s)	1797
FspBI	CTAG	4 cut(s)	1629, 1757, 1881, 2415
GlaI	GCGC	2 cut(s)	496, 1824
GluI	GCNGC	1 cut(s)	1797
GsuI	CTGGAG	1 cut(s)	2606
HaeII	RGCGCY	1 cut(s)	498
HaeIII	GGCC	3 cut(s)	118, 1761, 1961
HapII	CCGG	3 cut(s)	372, 382, 625
HhaI	GCGC	2 cut(s)	497, 1825
Hin6I	GCGC	2 cut(s)	495, 1823
HinP1I	GCGC	2 cut(s)	495, 1823
HincII	GTYRAC	1 cut(s)	2137
HindII	GTYRAC	1 cut(s)	2137
HindIII	AAGCTT	5 cut(s)	211, 503, 719, 1432, 2624
HpaII	CCGG	3 cut(s)	372, 382, 625
HphI	GGTGA	8 cut(s)	58, 66, 89, 589, 977, 1021, 1376, 2711
Hpy166II	GTNNAC	8 cut(s)	44, 97, 685, 777, 1282, 1850, 2129, 2137
Hpy188I	TCNGA	9 cut(s)	148, 556, 1381, 1537, 1636, 1998, 2031, 2110, 2268
Hpy8I	GTNNAC	8 cut(s)	44, 97, 685, 777, 1282, 1850, 2129, 2137
Hpy99I	CGWCG	2 cut(s)	329, 2138
HpyCH4III	ACNGT	7 cut(s)	41, 161, 1808, 1865, 2026, 2618, 2661
HpyCH4IV	ACGT	4 cut(s)	279, 313, 888, 2313
HpyF3I	CTNAG	7 cut(s)	91, 336, 848, 1956, 2030, 2267, 2606
HpySE526I	ACGT	4 cut(s)	279, 313, 888, 2313
HspAI	GCGC	2 cut(s)	495, 1823
KpnI	GGTACC	1 cut(s)	797
Kzo9I	GATC	8 cut(s)	639, 1311, 1443, 1682, 2296, 2308, 2443, 2575
LguI	GCTCTTC	1 cut(s)	1524
LmnI	GCTCC	3 cut(s)	384, 2416, 2422
Lsp1109I	GCAGC	1 cut(s)	1783
MaeI	CTAG	4 cut(s)	1629, 1757, 1881, 2415
MaeII	ACGT	4 cut(s)	279, 313, 888, 2313
MaeIII	GTNAC	4 cut(s)	1705, 2314, 2655, 2699
MalI	GATC	8 cut(s)	641, 1313, 1445, 1684, 2298, 2310, 2445, 2577
MbiI	CCGCTC	1 cut(s)	387
MboI	GATC	8 cut(s)	639, 1311, 1443, 1682, 2296, 2308, 2443, 2575
MhlI	GDGCHC	4 cut(s)	1950, 2131, 2358, 2427
MlyI	GAGTC	2 cut(s)	179, 2000
MmeI	TCCRAC	4 cut(s)	904, 982, 1048, 1892
Mph1103I	ATGCAT	2 cut(s)	549, 1165
MroXI	GAANNNNTTC	3 cut(s)	213, 1568, 2370
MslI	CAYNNNNRTG	5 cut(s)	147, 1052, 1164, 2082, 2282
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	3 cut(s)	372, 382, 625
MspR9I	CCNGG	7 cut(s)	373, 382, 485, 626, 919, 943, 2215
Mva1269I	GAATGC	3 cut(s)	1719, 1825, 1890
MvaI	CCWGG	4 cut(s)	485, 919, 943, 2215
MvnI	CGCG	1 cut(s)	2760
NciI	CCSGG	3 cut(s)	373, 382, 626
NcoI	CCATGG	1 cut(s)	1962
NdeI	CATATG	2 cut(s)	1165, 2638
NdeII	GATC	8 cut(s)	639, 1311, 1443, 1682, 2296, 2308, 2443, 2575
NlaIV	GGNNCC	5 cut(s)	119, 444, 795, 2330, 2412
NmeAIII	GCCGAG	2 cut(s)	94, 471
NmuCI	GTSAC	2 cut(s)	2655, 2699
NsiI	ATGCAT	2 cut(s)	549, 1165
NspI	RCATGY	2 cut(s)	736, 2143
PagI	TCATGA	1 cut(s)	1446
PciI	ACATGT	1 cut(s)	2139
PciSI	GCTCTTC	1 cut(s)	1524
PctI	GAATGC	3 cut(s)	1719, 1825, 1890
PdmI	GAANNNNTTC	3 cut(s)	213, 1568, 2370
PfeI	GAWTC	8 cut(s)	551, 818, 1082, 1556, 1768, 2105, 2178, 2762
PflMI	CCANNNNNTGG	1 cut(s)	490
PfoI	TCCNGGA	1 cut(s)	2213
PkrI	GCNGC	1 cut(s)	1798
PleI	GAGTC	2 cut(s)	179, 2000
PpsI	GAGTC	2 cut(s)	179, 2000
Ppu21I	YACGTR	2 cut(s)	314, 889
PpuMI	RGGWCCY	1 cut(s)	2329
PscI	ACATGT	1 cut(s)	2139
PshBI	ATTAAT	3 cut(s)	1406, 2225, 2469
PsiI	TTATAA	1 cut(s)	717
Psp124BI	GAGCTC	1 cut(s)	1950
Psp1406I	AACGTT	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	2329
Psp6I	CCWGG	4 cut(s)	483, 917, 941, 2213
PspGI	CCWGG	4 cut(s)	483, 917, 941, 2213
PspN4I	GGNNCC	5 cut(s)	119, 444, 795, 2330, 2412
PspPI	GGNCC	2 cut(s)	117, 2329
PspPPI	RGGWCCY	1 cut(s)	2329
PstNI	CAGNNNCTG	1 cut(s)	710
RsaI	GTAC	5 cut(s)	193, 377, 795, 887, 2400
RsaNI	GTAC	5 cut(s)	192, 376, 794, 886, 2399
RseI	CAYNNNNRTG	5 cut(s)	147, 1052, 1164, 2082, 2282
SacI	GAGCTC	1 cut(s)	1950
SalI	GTCGAC	1 cut(s)	2135
SapI	GCTCTTC	1 cut(s)	1524
SatI	GCNGC	1 cut(s)	1797
Sau3AI	GATC	8 cut(s)	639, 1311, 1443, 1682, 2296, 2308, 2443, 2575
Sau96I	GGNCC	2 cut(s)	117, 2329
SchI	GAGTC	2 cut(s)	179, 2000
ScrFI	CCNGG	7 cut(s)	373, 382, 485, 626, 919, 943, 2215
SduI	GDGCHC	4 cut(s)	1950, 2131, 2358, 2427
SfcI	CTRYAG	2 cut(s)	1656, 1776
SinI	GGWCC	1 cut(s)	2329
SmiMI	CAYNNNNRTG	5 cut(s)	147, 1052, 1164, 2082, 2282
SmlI	CTYRAG	3 cut(s)	246, 506, 1038
SmoI	CTYRAG	3 cut(s)	246, 506, 1038
SnaBI	TACGTA	1 cut(s)	889
SsiI	CCGC	5 cut(s)	69, 223, 387, 611, 2087
SspI	AATATT	3 cut(s)	1078, 1664, 2734
SspMI	CTAG	4 cut(s)	1629, 1757, 1881, 2415
SstI	GAGCTC	1 cut(s)	1950
StyD4I	CCNGG	7 cut(s)	371, 380, 483, 624, 917, 941, 2213
StyI	CCWWGG	2 cut(s)	1962, 2414
TaaI	ACNGT	7 cut(s)	41, 161, 1808, 1865, 2026, 2618, 2661
TaiI	ACGT	4 cut(s)	282, 316, 891, 2316
TaqI	TCGA	8 cut(s)	126, 324, 539, 933, 983, 1323, 2136, 2580
TatI	WGTACW	1 cut(s)	2398
TfiI	GAWTC	8 cut(s)	551, 818, 1082, 1556, 1768, 2105, 2178, 2762
TscAI	CASTG	3 cut(s)	1117, 2623, 2716
TseFI	GTSAC	2 cut(s)	2655, 2699
TseI	GCWGC	1 cut(s)	1796
Tsp45I	GTSAC	2 cut(s)	2655, 2699
TspRI	CASTG	3 cut(s)	1117, 2623, 2716
Van91I	CCANNNNNTGG	1 cut(s)	490
Vha464I	CTTAAG	1 cut(s)	506
VneI	GTGCAC	1 cut(s)	2127
VpaK11BI	GGWCC	1 cut(s)	2329
VspI	ATTAAT	3 cut(s)	1406, 2225, 2469
XapI	RAATTY	8 cut(s)	522, 652, 667, 1115, 1606, 1915, 2218, 2561
XbaI	TCTAGA	1 cut(s)	1880
XceI	RCATGY	2 cut(s)	736, 2143
XmaJI	CCTAGG	1 cut(s)	2414
XmiI	GTMKAC	3 cut(s)	776, 1281, 2136
XmnI	GAANNNNTTC	3 cut(s)	213, 1568, 2370
XspI	CTAG	4 cut(s)	1629, 1757, 1881, 2415
Zsp2I	ATGCAT	2 cut(s)	549, 1165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.