Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G09950 AT5G09950 AT5G09950 |
| fragaria_vesca | FvH4_6g40670 |
| malus_domestica | MD09G1126300.v1.1 |
| prunus_persica | Prupe.3G198300_v2.0.a1 |
| pyrus_communis | pycom09g05060 |
| rosa_chinensis | RchiOBHm_Chr2g0156061 RchiOBHm_Chr2g0156111 |
| rosa_laevigata | RLG00000020884 RLG00000020888 |
| rosa_multiflora | Rmu_sc0000260.1_g000021 Rmu_sc0011922.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00093230 |
| rosa_rugosa | Rorug02G0451500 |
| rosa_samantha | Rh2AG518400 Rh2BG529500 Rh2CG503100 Rh2DG538700 |
| rosa_wichuraiana | Rw2G042680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 741 |
| Acc36I | ACCTGC | 1 cut(s) | 829 |
| Acc65I | GGTACC | 1 cut(s) | 817 |
| AccB1I | GGYRCC | 2 cut(s) | 817, 1569 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 514 |
| AccBSI | CCGCTC | 3 cut(s) | 9, 63, 411 |
| AccI | GTMKAC | 2 cut(s) | 800, 2160 |
| AccII | CGCG | 1 cut(s) | 3096 |
| AciI | CCGC | 9 cut(s) | 7, 58, 61, 93, 140, 247, 411, 2111, 3141 |
| AclI | AACGTT | 1 cut(s) | 303 |
| AclWI | GGATC | 1 cut(s) | 1475 |
| AcoI | YGGCCR | 1 cut(s) | 3076 |
| AcsI | RAATTY | 6 cut(s) | 691, 1139, 1630, 1939, 2242, 2897 |
| AcuI | CTGAAG | 4 cut(s) | 845, 1650, 2052, 2867 |
| AdeI | CACNNNGTG | 1 cut(s) | 1569 |
| AfaI | GTAC | 4 cut(s) | 217, 819, 911, 2424 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 514, 721, 1566, 1641, 2349 |
| AflII | CTTAAG | 1 cut(s) | 530 |
| AflIII | ACRYGT | 2 cut(s) | 2163, 2673 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1621 |
| AjiI | CACGTC | 1 cut(s) | 2704 |
| AjnI | CCWGG | 2 cut(s) | 507, 2237 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1164, 1196 |
| Alw21I | GWGCWC | 3 cut(s) | 1974, 2155, 2451 |
| Alw26I | GTCTC | 1 cut(s) | 1349 |
| Alw44I | GTGCAC | 1 cut(s) | 2151 |
| AlwI | GGATC | 1 cut(s) | 1475 |
| AoxI | GGCC | 4 cut(s) | 1783, 1983, 2377, 3076 |
| ApaLI | GTGCAC | 1 cut(s) | 2151 |
| ApeKI | GCWGC | 2 cut(s) | 1820, 2735 |
| ApoI | RAATTY | 6 cut(s) | 691, 1139, 1630, 1939, 2242, 2897 |
| AseI | ATTAAT | 3 cut(s) | 1430, 2249, 2493 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 237, 1592, 2394 |
| Asp718I | GGTACC | 1 cut(s) | 817 |
| AspA2I | CCTAGG | 1 cut(s) | 2438 |
| AspLEI | GCGC | 1 cut(s) | 1849 |
| AspS9I | GGNCC | 2 cut(s) | 518, 2353 |
| AsuC2I | CCSGG | 3 cut(s) | 406, 650, 1585 |
| AsuHPI | GGTGA | 8 cut(s) | 82, 90, 113, 1001, 1045, 2627, 2761, 3047 |
| AvaII | GGWCC | 2 cut(s) | 518, 2353 |
| AvrII | CCTAGG | 1 cut(s) | 2438 |
| BaeGI | GKGCMC | 1 cut(s) | 2155 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 199, 232 |
| BanI | GGYRCC | 2 cut(s) | 817, 1569 |
| BanII | GRGCYC | 1 cut(s) | 1974 |
| BauI | CACGAG | 1 cut(s) | 2381 |
| Bbv12I | GWGCWC | 3 cut(s) | 1974, 2155, 2451 |
| BbvI | GCAGC | 2 cut(s) | 1807, 2747 |
| BceAI | ACGGC | 3 cut(s) | 199, 1970, 2509 |
| BciT130I | CCWGG | 2 cut(s) | 509, 2239 |
| BciVI | GTATCC | 1 cut(s) | 1949 |
| BcnI | CCSGG | 3 cut(s) | 406, 650, 1585 |
| BcoDI | GTCTC | 1 cut(s) | 1349 |
| BfaI | CTAG | 8 cut(s) | 680, 942, 966, 1653, 1781, 1905, 2439, 2600 |
| BfmI | CTRYAG | 3 cut(s) | 1680, 1752, 1800 |
| BfrI | CTTAAG | 1 cut(s) | 530 |
| BfuAI | ACCTGC | 1 cut(s) | 829 |
| BfuI | GTATCC | 1 cut(s) | 1949 |
| BisI | GCNGC | 3 cut(s) | 61, 1821, 2736 |
| BlnI | CCTAGG | 1 cut(s) | 2438 |
| BlpI | GCTNAGC | 1 cut(s) | 872 |
| BlsI | GCNGC | 3 cut(s) | 62, 1822, 2737 |
| Bme1390I | CCNGG | 5 cut(s) | 406, 509, 650, 1585, 2239 |
| Bme18I | GGWCC | 2 cut(s) | 518, 2353 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1621 |
| BmgBI | CACGTC | 1 cut(s) | 2704 |
| BmgT120I | GGNCC | 2 cut(s) | 518, 2353 |
| BmiI | GGNNCC | 6 cut(s) | 519, 819, 1571, 2354, 2436, 2637 |
| BmrFI | CCNGG | 5 cut(s) | 406, 509, 650, 1585, 2239 |
| BmsI | GCATC | 8 cut(s) | 531, 631, 715, 1267, 1360, 1593, 1692, 2205 |
| BpmI | CTGGAG | 1 cut(s) | 2942 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 872 |
| BpuEI | CTTGAG | 2 cut(s) | 255, 1047 |
| BpuMI | CCSGG | 3 cut(s) | 406, 650, 1585 |
| BsaAI | YACGTR | 2 cut(s) | 338, 913 |
| BsaI | GGTCTC | 1 cut(s) | 1349 |
| BsaJI | CCNNGG | 5 cut(s) | 204, 1980, 1986, 2438, 2575 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2775, 2805 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 514, 721, 1566, 1641, 2349 |
| Bse118I | RCCGGY | 1 cut(s) | 3078 |
| Bse1I | ACTGG | 6 cut(s) | 1035, 1207, 2219, 2436, 2925, 2989 |
| Bse3DI | GCAATG | 3 cut(s) | 18, 2275, 2587 |
| BseBI | CCWGG | 2 cut(s) | 509, 2239 |
| BseDI | CCNNGG | 5 cut(s) | 204, 1980, 1986, 2438, 2575 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 514, 721, 1566, 1641, 2349 |
| BseMI | GCAATG | 3 cut(s) | 18, 2275, 2587 |
| BseMII | CTCAG | 5 cut(s) | 863, 1395, 2045, 2282, 2933 |
| BseNI | ACTGG | 6 cut(s) | 1035, 1207, 2219, 2436, 2925, 2989 |
| BseRI | GAGGAG | 3 cut(s) | 95, 437, 1062 |
| BseSI | GKGCMC | 1 cut(s) | 2155 |
| BseXI | GCAGC | 2 cut(s) | 1807, 2747 |
| BseYI | CCCAGC | 2 cut(s) | 2753, 2801 |
| BsgI | GTGCAG | 1 cut(s) | 2779 |
| Bsh1236I | CGCG | 1 cut(s) | 3096 |
| BshFI | GGCC | 4 cut(s) | 1785, 1985, 2379, 3078 |
| BshNI | GGYRCC | 2 cut(s) | 817, 1569 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1974, 2155, 2451 |
| BsiSI | CCGG | 4 cut(s) | 406, 649, 1585, 3079 |
| BslFI | GGGAC | 3 cut(s) | 1491, 1524, 2819 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 514, 721, 1566, 1641, 2349 |
| BsmAI | GTCTC | 1 cut(s) | 1349 |
| BsmFI | GGGAC | 3 cut(s) | 1491, 1524, 2819 |
| BsmI | GAATGC | 4 cut(s) | 1743, 1849, 1914, 2878 |
| BsnI | GGCC | 4 cut(s) | 1785, 1985, 2379, 3078 |
| Bso31I | GGTCTC | 1 cut(s) | 1349 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1974, 2155, 2451 |
| Bsp143I | GATC | 8 cut(s) | 663, 1335, 1467, 1706, 2320, 2332, 2467, 2911 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 872 |
| BspACI | CCGC | 9 cut(s) | 7, 58, 61, 93, 140, 247, 411, 2111, 3141 |
| BspANI | GGCC | 4 cut(s) | 1785, 1985, 2379, 3078 |
| BspCNI | CTCAG | 5 cut(s) | 864, 1396, 2046, 2283, 2934 |
| BspFNI | CGCG | 1 cut(s) | 3096 |
| BspHI | TCATGA | 2 cut(s) | 1377, 1470 |
| BspLI | GGNNCC | 6 cut(s) | 519, 819, 1571, 2354, 2436, 2637 |
| BspMAI | CTGCAG | 1 cut(s) | 1756 |
| BspMI | ACCTGC | 1 cut(s) | 829 |
| BspPI | GGATC | 1 cut(s) | 1475 |
| BspQI | GCTCTTC | 1 cut(s) | 70 |
| BspT107I | GGYRCC | 2 cut(s) | 817, 1569 |
| BspTI | CTTAAG | 1 cut(s) | 530 |
| BspTNI | GGTCTC | 1 cut(s) | 1349 |
| BsrBI | CCGCTC | 3 cut(s) | 9, 63, 411 |
| BsrDI | GCAATG | 3 cut(s) | 18, 2275, 2587 |
| BsrFI | RCCGGY | 1 cut(s) | 3078 |
| BsrI | ACTGG | 6 cut(s) | 1035, 1207, 2219, 2436, 2925, 2989 |
| BssAI | RCCGGY | 1 cut(s) | 3078 |
| BssECI | CCNNGG | 5 cut(s) | 204, 1980, 1986, 2438, 2575 |
| BssMI | GATC | 8 cut(s) | 663, 1335, 1467, 1706, 2320, 2332, 2467, 2911 |
| BssNAI | GTATAC | 1 cut(s) | 801 |
| BssSI | CACGAG | 1 cut(s) | 2381 |
| BssT1I | CCWWGG | 3 cut(s) | 204, 1980, 2438 |
| Bst1107I | GTATAC | 1 cut(s) | 801 |
| Bst2BI | CACGAG | 1 cut(s) | 2381 |
| Bst2UI | CCWGG | 2 cut(s) | 509, 2239 |
| Bst4CI | ACNGT | 6 cut(s) | 1832, 1889, 2050, 2557, 2954, 2997 |
| Bst6I | CTCTTC | 2 cut(s) | 70, 1168 |
| BstAFI | CTTAAG | 1 cut(s) | 530 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 734 |
| BstBAI | YACGTR | 2 cut(s) | 338, 913 |
| BstC8I | GCNNGC | 9 cut(s) | 385, 505, 1456, 1787, 1858, 2266, 2377, 2964, 3080 |
| BstDEI | CTNAG | 7 cut(s) | 497, 872, 1404, 1574, 2054, 2291, 2942 |
| BstDSI | CCRYGG | 1 cut(s) | 1986 |
| BstEII | GGTNACC | 1 cut(s) | 2767 |
| BstFNI | CGCG | 1 cut(s) | 3096 |
| BstHHI | GCGC | 1 cut(s) | 1849 |
| BstKTI | GATC | 8 cut(s) | 666, 1338, 1470, 1709, 2323, 2335, 2470, 2914 |
| BstMAI | GTCTC | 1 cut(s) | 1349 |
| BstMBI | GATC | 8 cut(s) | 663, 1335, 1467, 1706, 2320, 2332, 2467, 2911 |
| BstNI | CCWGG | 2 cut(s) | 509, 2239 |
| BstNSI | RCATGY | 3 cut(s) | 760, 2167, 2677 |
| BstPI | GGTNACC | 1 cut(s) | 2767 |
| BstSCI | CCNGG | 5 cut(s) | 404, 507, 648, 1583, 2237 |
| BstSFI | CTRYAG | 3 cut(s) | 1680, 1752, 1800 |
| BstSLI | GKGCMC | 1 cut(s) | 2155 |
| BstSNI | TACGTA | 1 cut(s) | 913 |
| BstUI | CGCG | 1 cut(s) | 3096 |
| BstV1I | GCAGC | 2 cut(s) | 1807, 2747 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1987 |
| BstZ17I | GTATAC | 1 cut(s) | 801 |
| BsuI | GTATCC | 1 cut(s) | 1949 |
| BsuRI | GGCC | 4 cut(s) | 1785, 1985, 2379, 3078 |
| BtgI | CCRYGG | 1 cut(s) | 1986 |
| BtrI | CACGTC | 1 cut(s) | 2704 |
| BtsI | GCAGTG | 3 cut(s) | 735, 2745, 3045 |
| BtsIMutI | CAGTG | 4 cut(s) | 735, 2745, 2959, 3045 |
| BveI | ACCTGC | 1 cut(s) | 829 |
| Cac8I | GCNNGC | 9 cut(s) | 385, 505, 1456, 1787, 1858, 2266, 2377, 2964, 3080 |
| CciI | TCATGA | 2 cut(s) | 1377, 1470 |
| CfoI | GCGC | 1 cut(s) | 1849 |
| Cfr10I | RCCGGY | 1 cut(s) | 3078 |
| Cfr13I | GGNCC | 2 cut(s) | 518, 2353 |
| Csp6I | GTAC | 4 cut(s) | 216, 818, 910, 2423 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1607, 1642 |
| CviQI | GTAC | 4 cut(s) | 216, 818, 910, 2423 |
| DdeI | CTNAG | 7 cut(s) | 497, 872, 1404, 1574, 2054, 2291, 2942 |
| DpnI | GATC | 8 cut(s) | 665, 1337, 1469, 1708, 2322, 2334, 2469, 2913 |
| DpnII | GATC | 8 cut(s) | 663, 1335, 1467, 1706, 2320, 2332, 2467, 2911 |
| DraI | TTTAAA | 2 cut(s) | 442, 1809 |
| DraIII | CACNNNGTG | 1 cut(s) | 1569 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1621 |
| EaeI | YGGCCR | 1 cut(s) | 3076 |
| Eam1104I | CTCTTC | 2 cut(s) | 70, 1168 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1621 |
| EarI | CTCTTC | 2 cut(s) | 70, 1168 |
| EciI | GGCGGA | 2 cut(s) | 47, 129 |
| Ecl136II | GAGCTC | 1 cut(s) | 1972 |
| Eco105I | TACGTA | 1 cut(s) | 913 |
| Eco130I | CCWWGG | 3 cut(s) | 204, 1980, 2438 |
| Eco147I | AGGCCT | 1 cut(s) | 2379 |
| Eco24I | GRGCYC | 1 cut(s) | 1974 |
| Eco31I | GGTCTC | 1 cut(s) | 1349 |
| Eco47I | GGWCC | 2 cut(s) | 518, 2353 |
| Eco53kI | GAGCTC | 1 cut(s) | 1972 |
| Eco57I | CTGAAG | 4 cut(s) | 845, 1650, 2052, 2867 |
| Eco91I | GGTNACC | 1 cut(s) | 2767 |
| EcoICRI | GAGCTC | 1 cut(s) | 1972 |
| EcoO109I | RGGNCCY | 2 cut(s) | 518, 2353 |
| EcoO65I | GGTNACC | 1 cut(s) | 2767 |
| EcoRI | GAATTC | 4 cut(s) | 691, 1630, 1939, 2242 |
| EcoRII | CCWGG | 2 cut(s) | 507, 2237 |
| EcoT14I | CCWWGG | 3 cut(s) | 204, 1980, 2438 |
| EcoT22I | ATGCAT | 2 cut(s) | 573, 1189 |
| EcoT38I | GRGCYC | 1 cut(s) | 1974 |
| ErhI | CCWWGG | 3 cut(s) | 204, 1980, 2438 |
| FaqI | GGGAC | 3 cut(s) | 1491, 1524, 2819 |
| FauI | CCCGC | 1 cut(s) | 3134 |
| FauNDI | CATATG | 2 cut(s) | 1189, 2974 |
| FblI | GTMKAC | 2 cut(s) | 800, 2160 |
| Fnu4HI | GCNGC | 3 cut(s) | 61, 1821, 2736 |
| FriOI | GRGCYC | 1 cut(s) | 1974 |
| Fsp4HI | GCNGC | 3 cut(s) | 61, 1821, 2736 |
| FspBI | CTAG | 8 cut(s) | 680, 942, 966, 1653, 1781, 1905, 2439, 2600 |
| GlaI | GCGC | 1 cut(s) | 1848 |
| GluI | GCNGC | 3 cut(s) | 61, 1821, 2736 |
| GsaI | CCCAGC | 2 cut(s) | 2757, 2805 |
| GsuI | CTGGAG | 1 cut(s) | 2942 |
| HaeIII | GGCC | 4 cut(s) | 1785, 1985, 2379, 3078 |
| HapII | CCGG | 4 cut(s) | 406, 649, 1585, 3079 |
| HhaI | GCGC | 1 cut(s) | 1849 |
| Hin6I | GCGC | 1 cut(s) | 1847 |
| HinP1I | GCGC | 1 cut(s) | 1847 |
| HincII | GTYRAC | 2 cut(s) | 1410, 2161 |
| HindII | GTYRAC | 2 cut(s) | 1410, 2161 |
| HindIII | AAGCTT | 3 cut(s) | 743, 1456, 2960 |
| HpaII | CCGG | 4 cut(s) | 406, 649, 1585, 3079 |
| HphI | GGTGA | 8 cut(s) | 82, 90, 113, 1001, 1045, 2627, 2761, 3047 |
| Hpy166II | GTNNAC | 9 cut(s) | 307, 709, 801, 1306, 1410, 1874, 2153, 2161, 2653 |
| Hpy8I | GTNNAC | 9 cut(s) | 307, 709, 801, 1306, 1410, 1874, 2153, 2161, 2653 |
| Hpy99I | CGWCG | 2 cut(s) | 353, 2162 |
| HpyCH4III | ACNGT | 6 cut(s) | 1832, 1889, 2050, 2557, 2954, 2997 |
| HpyCH4IV | ACGT | 6 cut(s) | 303, 309, 337, 445, 912, 2703 |
| HpyF3I | CTNAG | 7 cut(s) | 497, 872, 1404, 1574, 2054, 2291, 2942 |
| HpySE526I | ACGT | 6 cut(s) | 303, 309, 337, 445, 912, 2703 |
| HspAI | GCGC | 1 cut(s) | 1847 |
| KpnI | GGTACC | 1 cut(s) | 821 |
| KroI | GCCGGC | 1 cut(s) | 3078 |
| KroNI | GCCGGC | 1 cut(s) | 3080 |
| Kzo9I | GATC | 8 cut(s) | 663, 1335, 1467, 1706, 2320, 2332, 2467, 2911 |
| LguI | GCTCTTC | 1 cut(s) | 70 |
| LmnI | GCTCC | 4 cut(s) | 206, 408, 2440, 2446 |
| Lsp1109I | GCAGC | 2 cut(s) | 1807, 2747 |
| LweI | GCATC | 8 cut(s) | 531, 631, 715, 1267, 1360, 1593, 1692, 2205 |
| MaeI | CTAG | 8 cut(s) | 680, 942, 966, 1653, 1781, 1905, 2439, 2600 |
| MaeII | ACGT | 6 cut(s) | 303, 309, 337, 445, 912, 2703 |
| MaeIII | GTNAC | 6 cut(s) | 373, 1729, 2588, 2767, 2991, 3035 |
| MalI | GATC | 8 cut(s) | 665, 1337, 1469, 1708, 2322, 2334, 2469, 2913 |
| MbiI | CCGCTC | 3 cut(s) | 9, 63, 411 |
| MboI | GATC | 8 cut(s) | 663, 1335, 1467, 1706, 2320, 2332, 2467, 2911 |
| MhlI | GDGCHC | 3 cut(s) | 1974, 2155, 2451 |
| MlyI | GAGTC | 2 cut(s) | 203, 2024 |
| MmeI | TCCRAC | 6 cut(s) | 928, 1006, 1072, 1584, 1916, 2613 |
| Mph1103I | ATGCAT | 2 cut(s) | 573, 1189 |
| MroNI | GCCGGC | 1 cut(s) | 3078 |
| MroXI | GAANNNNTTC | 3 cut(s) | 237, 1592, 2394 |
| MslI | CAYNNNNRTG | 5 cut(s) | 171, 1076, 1188, 2106, 2306 |
| MspCI | CTTAAG | 1 cut(s) | 530 |
| MspI | CCGG | 4 cut(s) | 406, 649, 1585, 3079 |
| MspR9I | CCNGG | 5 cut(s) | 406, 509, 650, 1585, 2239 |
| Mva1269I | GAATGC | 4 cut(s) | 1743, 1849, 1914, 2878 |
| MvaI | CCWGG | 2 cut(s) | 509, 2239 |
| MvnI | CGCG | 1 cut(s) | 3096 |
| NaeI | GCCGGC | 1 cut(s) | 3080 |
| NciI | CCSGG | 3 cut(s) | 406, 650, 1585 |
| NdeI | CATATG | 2 cut(s) | 1189, 2974 |
| NdeII | GATC | 8 cut(s) | 663, 1335, 1467, 1706, 2320, 2332, 2467, 2911 |
| NgoMIV | GCCGGC | 1 cut(s) | 3078 |
| NlaIV | GGNNCC | 6 cut(s) | 519, 819, 1571, 2354, 2436, 2637 |
| NmeAIII | GCCGAG | 2 cut(s) | 495, 2600 |
| NmuCI | GTSAC | 3 cut(s) | 2767, 2991, 3035 |
| NsiI | ATGCAT | 2 cut(s) | 573, 1189 |
| NspI | RCATGY | 3 cut(s) | 760, 2167, 2677 |
| PagI | TCATGA | 2 cut(s) | 1377, 1470 |
| PceI | AGGCCT | 1 cut(s) | 2379 |
| PciI | ACATGT | 2 cut(s) | 2163, 2673 |
| PciSI | GCTCTTC | 1 cut(s) | 70 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1353 |
| PctI | GAATGC | 4 cut(s) | 1743, 1849, 1914, 2878 |
| PdiI | GCCGGC | 1 cut(s) | 3080 |
| PdmI | GAANNNNTTC | 3 cut(s) | 237, 1592, 2394 |
| PfeI | GAWTC | 9 cut(s) | 575, 842, 1106, 1210, 1580, 1792, 2129, 2202, 3098 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 514 |
| PfoI | TCCNGGA | 2 cut(s) | 1583, 2237 |
| PkrI | GCNGC | 3 cut(s) | 62, 1822, 2737 |
| PleI | GAGTC | 2 cut(s) | 203, 2024 |
| PpsI | GAGTC | 2 cut(s) | 203, 2024 |
| Ppu21I | YACGTR | 2 cut(s) | 338, 913 |
| PpuMI | RGGWCCY | 2 cut(s) | 518, 2353 |
| PscI | ACATGT | 2 cut(s) | 2163, 2673 |
| PshBI | ATTAAT | 3 cut(s) | 1430, 2249, 2493 |
| PsiI | TTATAA | 1 cut(s) | 741 |
| Psp124BI | GAGCTC | 1 cut(s) | 1974 |
| Psp1406I | AACGTT | 1 cut(s) | 303 |
| Psp5II | RGGWCCY | 2 cut(s) | 518, 2353 |
| Psp6I | CCWGG | 2 cut(s) | 507, 2237 |
| PspEI | GGTNACC | 1 cut(s) | 2767 |
| PspFI | CCCAGC | 2 cut(s) | 2753, 2801 |
| PspGI | CCWGG | 2 cut(s) | 507, 2237 |
| PspN4I | GGNNCC | 6 cut(s) | 519, 819, 1571, 2354, 2436, 2637 |
| PspPI | GGNCC | 2 cut(s) | 518, 2353 |
| PspPPI | RGGWCCY | 2 cut(s) | 518, 2353 |
| PstI | CTGCAG | 1 cut(s) | 1756 |
| RsaI | GTAC | 4 cut(s) | 217, 819, 911, 2424 |
| RsaNI | GTAC | 4 cut(s) | 216, 818, 910, 2423 |
| RseI | CAYNNNNRTG | 5 cut(s) | 171, 1076, 1188, 2106, 2306 |
| SacI | GAGCTC | 1 cut(s) | 1974 |
| SalI | GTCGAC | 1 cut(s) | 2159 |
| SapI | GCTCTTC | 1 cut(s) | 70 |
| SatI | GCNGC | 3 cut(s) | 61, 1821, 2736 |
| Sau3AI | GATC | 8 cut(s) | 663, 1335, 1467, 1706, 2320, 2332, 2467, 2911 |
| Sau96I | GGNCC | 2 cut(s) | 518, 2353 |
| SchI | GAGTC | 2 cut(s) | 203, 2024 |
| ScrFI | CCNGG | 5 cut(s) | 406, 509, 650, 1585, 2239 |
| SduI | GDGCHC | 3 cut(s) | 1974, 2155, 2451 |
| SfaNI | GCATC | 8 cut(s) | 531, 631, 715, 1267, 1360, 1593, 1692, 2205 |
| SfcI | CTRYAG | 3 cut(s) | 1680, 1752, 1800 |
| SinI | GGWCC | 2 cut(s) | 518, 2353 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 171, 1076, 1188, 2106, 2306 |
| SmlI | CTYRAG | 3 cut(s) | 270, 530, 1062 |
| SmoI | CTYRAG | 3 cut(s) | 270, 530, 1062 |
| SnaBI | TACGTA | 1 cut(s) | 913 |
| SseBI | AGGCCT | 1 cut(s) | 2379 |
| SsiI | CCGC | 9 cut(s) | 7, 58, 61, 93, 140, 247, 411, 2111, 3141 |
| SspI | AATATT | 3 cut(s) | 1102, 1688, 3070 |
| SspMI | CTAG | 8 cut(s) | 680, 942, 966, 1653, 1781, 1905, 2439, 2600 |
| SstI | GAGCTC | 1 cut(s) | 1974 |
| StuI | AGGCCT | 1 cut(s) | 2379 |
| StyD4I | CCNGG | 5 cut(s) | 404, 507, 648, 1583, 2237 |
| StyI | CCWWGG | 3 cut(s) | 204, 1980, 2438 |
| TaaI | ACNGT | 6 cut(s) | 1832, 1889, 2050, 2557, 2954, 2997 |
| TaiI | ACGT | 6 cut(s) | 306, 312, 340, 448, 915, 2706 |
| TaqI | TCGA | 8 cut(s) | 150, 348, 563, 1007, 1347, 2160, 2208, 2916 |
| TatI | WGTACW | 1 cut(s) | 2422 |
| TauI | GCSGC | 1 cut(s) | 63 |
| TfiI | GAWTC | 9 cut(s) | 575, 842, 1106, 1210, 1580, 1792, 2129, 2202, 3098 |
| TscAI | CASTG | 4 cut(s) | 735, 2745, 2959, 3052 |
| TseFI | GTSAC | 3 cut(s) | 2767, 2991, 3035 |
| TseI | GCWGC | 2 cut(s) | 1820, 2735 |
| Tsp45I | GTSAC | 3 cut(s) | 2767, 2991, 3035 |
| TspRI | CASTG | 4 cut(s) | 735, 2745, 2959, 3052 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 514 |
| Vha464I | CTTAAG | 1 cut(s) | 530 |
| VneI | GTGCAC | 1 cut(s) | 2151 |
| VpaK11BI | GGWCC | 2 cut(s) | 518, 2353 |
| VspI | ATTAAT | 3 cut(s) | 1430, 2249, 2493 |
| XapI | RAATTY | 6 cut(s) | 691, 1139, 1630, 1939, 2242, 2897 |
| XbaI | TCTAGA | 1 cut(s) | 1904 |
| XceI | RCATGY | 3 cut(s) | 760, 2167, 2677 |
| XmaJI | CCTAGG | 1 cut(s) | 2438 |
| XmiI | GTMKAC | 2 cut(s) | 800, 2160 |
| XmnI | GAANNNNTTC | 3 cut(s) | 237, 1592, 2394 |
| XspI | CTAG | 8 cut(s) | 680, 942, 966, 1653, 1781, 1905, 2439, 2600 |
| Zsp2I | ATGCAT | 2 cut(s) | 573, 1189 |