Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011231

Physical Location & Seq

Genomic Coordinates Forward (+)

72851019 .. 72854288

Gene Structure 3270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52495

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3180 bp

ATGTATTATATATTGCCTAATGAAGTGCATAACATATATTATATATTGCCAAAACGAAAACATGAAGGAAGAAAGCACATCACTCTTCTTCACTACAACACCATGTTCCGCTCTTTCTTCATTGCAGGACTACCTTCTCCCACTCACAAAGCAAAACTCCGCCGCTCTTCACACCCTGCTTTCACTTCTCTCACCGCCTCACCTCTCCTCTCAAACTCACTTCACCACACCAACCAATCATCTCCGCCCCACATCGAAACCCAAACCCCACATTCCAATGCTACTTACGGCTATCTTCTCAATCGGTTCAAGGACTCCCGTACCTCAAACGAAGCCGAAACCTTTCATTTGCGGATTTTCAAACACGGGTTCACTCAAGATTTGTTCTTGTGCAATACCCTCATCAACGTTTACGTCAAAATCGGTGCTTTGGCTAATGCACGTAAGCTGTTCGACGAAATGCCTGACAAGAACTCGGTTACTTGGGCTTGCTTGATTTCGGGGTATGCCCGGAGCGGTGTGCCAGAGGAGGCGTGTGGGCAGTTTAAACGGATGGTCTGTGATGGTTTCGTGCCGAGTGTTTATGCTTTTGGGAGTGTTTTAAGGGCTTGCCAGGAGTTGGGTCCTTGCAAACTTAAGTTTGGGATGCAAGTTCAGGGGTTGTTATCGAAAATGCATGATTCGGATGTGTTGTTAGCTAATGTGCTGATGTCAATGTATGGGAGATGTTTGGGTTCTGCCGATGATGCTTACCGGGCTTTTTGTGAGATCAAGTTTAGAAATCTAGTGTCTTGGAATTCTATTATTTCGGTTTACTGCCAAAGAGGGGATGCAGTGTTTGCTTATAAGCTTTTCTCAAACATGCAGAAGGATGGTGTGGATTTTGATTTGCAACCGAATGAGTATACTTTCGGTAGCTTGGTACCTGCCTGTTGTTCTTTGGCTGATTCTGGTTTGGTTTTGCTTCAGCAAATGCTGAGCAGGGTCAGTAAAGCTGGATTTTTACAGGATTTGTACGTAGGAAGTGCTTTGGTTAGTGGATTTGCGAGGGTTGGATTAGTCGATTACGCTAGGAAGATTTTTGAGCAGATGGGTGAGAGGAATGTAGTTTCGATGAATGGGTTGATGGTTGGACTGGTGAGGCAGAAGCGAGGAGAAGAAGCCACTCAAGTTTTCATGGAGATGAAGGACTTGGGAAGAGAGGTTCATGCATATGTAATTGCAACTGGTTTGATTAACAGCAAGGTTGCAATAGAGAATGGGCTTGTAAATATGTATGCTAAATGTGGTGCTATTGATGATGCTTGTTCAGTTTTCAGGCTCATGGTAGACAGAGACTTAATATCATGGAACTCTCTGATCTCTGGTCTCGACCAGAATGAGCGGTTTGAAGATGCAGTAATGAAGTTCTGTGAAATGAGAAAATCTGAGTTGAAGCCTTCAATTTTCACATTAATTAGTGCTTTGAGTTCGTGTGCAAGCTTGGAGTGGATCATGATGGGACAGCAAATACATTGTGAAGCACTTAAATTGGGACTTGATTTGGATGTTTCGGTTTCAAATGCTCTTCTTGCATTGTATTCCGACACAGGGTGTCTTAATGAATCCCGGAATGTTTTCTTCTTGATGCAGGAGTATGACCAAGTGTCGTGGAATTCCATAGTTGGGGCTTTAGCTAGTTCAGAGGCTTCAGTTTTTGAAGCTGTAGAATATTTATTGGAAATGATGCGATCTGGATGGGAACTTAATAGAGTAACATTTATTAGCATTCTTTCAGCAGTTTCATCTCTCTCACTTCATGAGCTAGGCCAGCAGATTCATGCTGTAGTCTTAAAATACAATGCGGCAAAGGACTGTGCTATTGAGAATGCGCTTATTGCTTGCTATGGAAAGTGTGGACAGATAGAGGATTGCGAGAAGATATTTTCTAGAATGCCTGAAAGAAGGGATGAAGTAAGTTGGAATTCCATGATTTCTGGATACATACATAATGAGCTCTTGCCCAAGGCCATGGATTTGGTCTGGTTTATGATGCAGAGGGGTCAGAGATTAGACTCTTTTACTTTTGCTACTGTTCTGAGTGCTTGTGCTTCAGTTGCAACATTAGAGCGTGGGATGGAAGTTCATGCTTCTGCTATAAGAGCTTGTTTGAAATCTGATGTTGTAGTTGGGAGTGCACTTGTCGACATGTATTCAAAGTGTGGAAGGATTGATTATGCTTCAAGATTCTTCAAGTTGATGCCAGTAAGGAATGTGTATTCCTGGAATTCATTAATATCAGGATATGCTCGCAATGGAGATGGACAGAAAGCTCTGAGGCTTTTCACACAAATGAAGCAACAAGATCAGCCACCAGATCATGTTACCTTTGTTGGGGTCCTATCAGCTTGTAGCCATGCAGGGCTCGTGGATGAAGGGTTTCAGCATTTCAATTCCATGAGTAAAGTACATGGACTGGCTCCTAGGATGGAGCACTTTTCATGTATGGTTGATCTTCTTGGAAGGGCAGGAAAAATTAATATGATAGAGGACTTCATAAAAAAAATGCCGTTGAAGCCTAATGTGCTTATTTGGAGGACAGTTTTAGGGGCTTGTTGCCGAGGCAATGGTTGTAACACAGAGCTAGGCAGGATGGCTGGTGAAATGCTATTGGAGTTGGAACCCCAAAATGCTGTGAACTATGTGCTTCTTGCTAACATGTATGCTTCTGGTGGGAAGTGGGATGACGTGGCAAAGGCTAGGATGACAATGAGAAAGGCAGCAGTGAAGAAGGAAGCTGGGTGCAGTTGGGTCACCATGAAAGATGGAGTTCATGTTTTTGTAGCTGGGGACAAATTACACCCAGAGAAAGATTTGATATATGAAAAACTGAAGGAACTTAACAAGAAAATGAGGAATGCTGGATATGTGCCTGAAACAAAATTTGCACTATACGATCTCGAACTGGAGAACAAGGAAGAACTCCTGAGTTATCACAGTGAAAAGCTTGCTGTTGCATATGTTCTTACTCGCCAGTCACAGTTGCCTATAAGGATTATGAAAAACCTTCGGGTTTGTGGTGACTGCCACACTGCCTTCAAATACATATCAAATATTGTTGGCCGGCAAATAGTATTACGCGATTCAAACAGATTTCATCACTTTCAAGATGGCAAGTGTTCTTGCGGGGATTTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

1059

Amino Acids

118.92

Weight (kDa)

8.28

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	157 - 204	1.5e-07	PPR repeat family
PPR_2	PF13041	261 - 312	3.6e-11	PPR repeat family
PPR	PF01535	263 - 293	1.5e-06	PPR repeat
PPR_2	PF13041	446 - 493	5.8e-07	PPR repeat family
PPR_2	PF13041	650 - 697	2.9e-08	PPR repeat family
PPR_2	PF13041	750 - 798	1.2e-12	PPR repeat family
PPR_1	PF12854	750 - 779	8.2e-06	PPR repeat
PPR	PF01535	753 - 780	5.6e-08	PPR repeat
E_motif	PF20431	872 - 931	2.1e-19	E motif
Eplus_motif	PF20430	937 - 964	6.5e-06	E+ motif
DYW_deaminase	PF14432	968 - 1059	6.5e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09950 AT5G09950 AT5G09950
fragaria_vesca	FvH4_6g40670
malus_domestica	MD09G1126300.v1.1
prunus_persica	Prupe.3G198300_v2.0.a1
pyrus_communis	pycom09g05060
rosa_chinensis	RchiOBHm_Chr2g0156061 RchiOBHm_Chr2g0156111
rosa_laevigata	RLG00000020884 RLG00000020888
rosa_multiflora	Rmu_sc0000260.1_g000021 Rmu_sc0011922.1_g000009
rosa_roxburghii	Rroxscaffold_2G00093230
rosa_rugosa	Rorug02G0451500
rosa_samantha	Rh2AG518400 Rh2BG529500 Rh2CG503100 Rh2DG538700
rosa_wichuraiana	Rw2G042680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	846
Acc36I	ACCTGC	1 cut(s)	934
Acc65I	GGTACC	1 cut(s)	922
AccB1I	GGYRCC	1 cut(s)	922
AccB7I	CCANNNNNTGG	1 cut(s)	619
AccBSI	CCGCTC	4 cut(s)	111, 165, 516, 1384
AccI	GTMKAC	3 cut(s)	905, 1329, 2184
AccII	CGCG	1 cut(s)	3120
AclI	AACGTT	1 cut(s)	408
AclWI	GGATC	1 cut(s)	1499
AcoI	YGGCCR	1 cut(s)	3100
AcsI	RAATTY	5 cut(s)	796, 1654, 1963, 2266, 2921
AcuI	CTGAAG	4 cut(s)	950, 1674, 2076, 2891
AdeI	CACNNNGTG	1 cut(s)	1593
AfaI	GTAC	4 cut(s)	322, 924, 1016, 2448
AfiI	CCNNNNNNNGG	5 cut(s)	619, 826, 1590, 1665, 2373
AflII	CTTAAG	1 cut(s)	635
AflIII	ACRYGT	2 cut(s)	2187, 2697
AhdI	GACNNNNNGTC	1 cut(s)	1645
AjiI	CACGTC	1 cut(s)	2728
AjnI	CCWGG	2 cut(s)	612, 2261
AloI	GAACNNNNNNTCC	2 cut(s)	1188, 1220
Alw21I	GWGCWC	3 cut(s)	1998, 2179, 2475
Alw26I	GTCTC	2 cut(s)	1329, 1373
Alw44I	GTGCAC	1 cut(s)	2175
AlwI	GGATC	1 cut(s)	1499
AoxI	GGCC	3 cut(s)	1807, 2007, 3100
ApaLI	GTGCAC	1 cut(s)	2175
ApeKI	GCWGC	1 cut(s)	2759
ApoI	RAATTY	5 cut(s)	796, 1654, 1963, 2266, 2921
AseI	ATTAAT	3 cut(s)	1454, 2273, 2517
Asp700I	GAANNNNTTC	3 cut(s)	342, 1616, 2418
Asp718I	GGTACC	1 cut(s)	922
AspA2I	CCTAGG	1 cut(s)	2462
AspLEI	GCGC	1 cut(s)	1873
AspS9I	GGNCC	2 cut(s)	623, 2377
AsuC2I	CCSGG	3 cut(s)	511, 755, 1609
AsuHPI	GGTGA	8 cut(s)	184, 192, 215, 1106, 1150, 2651, 2785, 3071
AvaII	GGWCC	2 cut(s)	623, 2377
AvrII	CCTAGG	1 cut(s)	2462
BaeGI	GKGCMC	1 cut(s)	2179
BaeI	ACNNNNGTAYC	2 cut(s)	304, 337
BanI	GGYRCC	1 cut(s)	922
BanII	GRGCYC	2 cut(s)	1998, 2406
BauI	CACGAG	1 cut(s)	2405
Bbv12I	GWGCWC	3 cut(s)	1998, 2179, 2475
BbvI	GCAGC	1 cut(s)	2771
BceAI	ACGGC	2 cut(s)	304, 2533
BciT130I	CCWGG	2 cut(s)	614, 2263
BciVI	GTATCC	1 cut(s)	1973
BcnI	CCSGG	3 cut(s)	511, 755, 1609
BcoDI	GTCTC	2 cut(s)	1329, 1373
BfaI	CTAG	8 cut(s)	785, 1071, 1677, 1805, 1929, 2463, 2624, 2739
BfmI	CTRYAG	2 cut(s)	1704, 1824
BfrI	CTTAAG	1 cut(s)	635
BfuAI	ACCTGC	1 cut(s)	934
BfuI	GTATCC	1 cut(s)	1973
BisI	GCNGC	3 cut(s)	163, 1845, 2760
BlnI	CCTAGG	1 cut(s)	2462
BlpI	GCTNAGC	1 cut(s)	977
BlsI	GCNGC	3 cut(s)	164, 1846, 2761
Bme1390I	CCNGG	5 cut(s)	511, 614, 755, 1609, 2263
Bme18I	GGWCC	2 cut(s)	623, 2377
BmeRI	GACNNNNNGTC	1 cut(s)	1645
BmgBI	CACGTC	1 cut(s)	2728
BmgT120I	GGNCC	2 cut(s)	623, 2377
BmiI	GGNNCC	5 cut(s)	624, 924, 2378, 2460, 2661
BmrFI	CCNGG	5 cut(s)	511, 614, 755, 1609, 2263
BmsI	GCATC	9 cut(s)	636, 736, 820, 1291, 1384, 1617, 1716, 2022, 2229
BpmI	CTGGAG	1 cut(s)	2966
Bpu1102I	GCTNAGC	1 cut(s)	977
BpuEI	CTTGAG	2 cut(s)	360, 1152
BpuMI	CCSGG	3 cut(s)	511, 755, 1609
BsaAI	YACGTR	2 cut(s)	443, 1018
BsaI	GGTCTC	1 cut(s)	1373
BsaJI	CCNNGG	4 cut(s)	2004, 2010, 2462, 2599
BsaXI	ACNNNNNCTCC	2 cut(s)	2799, 2829
Bsc4I	CCNNNNNNNGG	5 cut(s)	619, 826, 1590, 1665, 2373
Bse118I	RCCGGY	1 cut(s)	3102
Bse1I	ACTGG	6 cut(s)	1140, 1231, 2243, 2460, 2949, 3013
Bse3DI	GCAATG	3 cut(s)	120, 2299, 2611
BseBI	CCWGG	2 cut(s)	614, 2263
BseDI	CCNNGG	4 cut(s)	2004, 2010, 2462, 2599
BseLI	CCNNNNNNNGG	5 cut(s)	619, 826, 1590, 1665, 2373
BseMI	GCAATG	3 cut(s)	120, 2299, 2611
BseMII	CTCAG	5 cut(s)	968, 1419, 2069, 2306, 2957
BseNI	ACTGG	6 cut(s)	1140, 1231, 2243, 2460, 2949, 3013
BseRI	GAGGAG	3 cut(s)	197, 542, 1167
BseSI	GKGCMC	1 cut(s)	2179
BseXI	GCAGC	1 cut(s)	2771
BseYI	CCCAGC	2 cut(s)	2777, 2825
BsgI	GTGCAG	1 cut(s)	2803
Bsh1236I	CGCG	1 cut(s)	3120
BshFI	GGCC	3 cut(s)	1809, 2009, 3102
BshNI	GGYRCC	1 cut(s)	922
BsiHKAI	GWGCWC	3 cut(s)	1998, 2179, 2475
BsiSI	CCGG	4 cut(s)	511, 754, 1609, 3103
BslFI	GGGAC	3 cut(s)	1515, 1548, 2843
BslI	CCNNNNNNNGG	5 cut(s)	619, 826, 1590, 1665, 2373
BsmAI	GTCTC	2 cut(s)	1329, 1373
BsmFI	GGGAC	3 cut(s)	1515, 1548, 2843
BsmI	GAATGC	4 cut(s)	1767, 1873, 1938, 2902
BsnI	GGCC	3 cut(s)	1809, 2009, 3102
Bso31I	GGTCTC	1 cut(s)	1373
Bsp1286I	GDGCHC	4 cut(s)	1998, 2179, 2406, 2475
Bsp143I	GATC	8 cut(s)	768, 1359, 1491, 1730, 2344, 2356, 2491, 2935
Bsp1720I	GCTNAGC	1 cut(s)	977
Bsp19I	CCATGG	1 cut(s)	2010
BspANI	GGCC	3 cut(s)	1809, 2009, 3102
BspCNI	CTCAG	5 cut(s)	969, 1420, 2070, 2307, 2958
BspFNI	CGCG	1 cut(s)	3120
BspHI	TCATGA	2 cut(s)	1494, 1798
BspLI	GGNNCC	5 cut(s)	624, 924, 2378, 2460, 2661
BspMI	ACCTGC	1 cut(s)	934
BspPI	GGATC	1 cut(s)	1499
BspQI	GCTCTTC	2 cut(s)	172, 1572
BspT107I	GGYRCC	1 cut(s)	922
BspTI	CTTAAG	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	1373
BsrBI	CCGCTC	4 cut(s)	111, 165, 516, 1384
BsrDI	GCAATG	3 cut(s)	120, 2299, 2611
BsrFI	RCCGGY	1 cut(s)	3102
BsrI	ACTGG	6 cut(s)	1140, 1231, 2243, 2460, 2949, 3013
BssAI	RCCGGY	1 cut(s)	3102
BssECI	CCNNGG	4 cut(s)	2004, 2010, 2462, 2599
BssMI	GATC	8 cut(s)	768, 1359, 1491, 1730, 2344, 2356, 2491, 2935
BssNAI	GTATAC	1 cut(s)	906
BssSI	CACGAG	1 cut(s)	2405
BssT1I	CCWWGG	3 cut(s)	2004, 2010, 2462
Bst1107I	GTATAC	1 cut(s)	906
Bst2BI	CACGAG	1 cut(s)	2405
Bst2UI	CCWGG	2 cut(s)	614, 2263
Bst4CI	ACNGT	5 cut(s)	1856, 2074, 2581, 2978, 3021
Bst6I	CTCTTC	4 cut(s)	90, 172, 1192, 1572
BstAFI	CTTAAG	1 cut(s)	635
BstAPI	GCANNNNNTGC	1 cut(s)	839
BstBAI	YACGTR	2 cut(s)	443, 1018
BstC8I	GCNNGC	8 cut(s)	490, 610, 1480, 1811, 1882, 2290, 2988, 3104
BstDEI	CTNAG	5 cut(s)	977, 1428, 2078, 2315, 2966
BstDSI	CCRYGG	1 cut(s)	2010
BstEII	GGTNACC	1 cut(s)	2791
BstFNI	CGCG	1 cut(s)	3120
BstHHI	GCGC	1 cut(s)	1873
BstKTI	GATC	8 cut(s)	771, 1362, 1494, 1733, 2347, 2359, 2494, 2938
BstMAI	GTCTC	2 cut(s)	1329, 1373
BstMBI	GATC	8 cut(s)	768, 1359, 1491, 1730, 2344, 2356, 2491, 2935
BstNI	CCWGG	2 cut(s)	614, 2263
BstNSI	RCATGY	3 cut(s)	865, 2191, 2701
BstPI	GGTNACC	1 cut(s)	2791
BstSCI	CCNGG	5 cut(s)	509, 612, 753, 1607, 2261
BstSFI	CTRYAG	2 cut(s)	1704, 1824
BstSLI	GKGCMC	1 cut(s)	2179
BstSNI	TACGTA	1 cut(s)	1018
BstUI	CGCG	1 cut(s)	3120
BstV1I	GCAGC	1 cut(s)	2771
BstXI	CCANNNNNNTGG	2 cut(s)	2011, 2017
BstZ17I	GTATAC	1 cut(s)	906
BsuI	GTATCC	1 cut(s)	1973
BsuRI	GGCC	3 cut(s)	1809, 2009, 3102
BtgI	CCRYGG	1 cut(s)	2010
BtrI	CACGTC	1 cut(s)	2728
BtsI	GCAGTG	3 cut(s)	840, 2769, 3069
BtsIMutI	CAGTG	4 cut(s)	840, 2769, 2983, 3069
BveI	ACCTGC	1 cut(s)	934
Cac8I	GCNNGC	8 cut(s)	490, 610, 1480, 1811, 1882, 2290, 2988, 3104
CciI	TCATGA	2 cut(s)	1494, 1798
CfoI	GCGC	1 cut(s)	1873
Cfr10I	RCCGGY	1 cut(s)	3102
Cfr13I	GGNCC	2 cut(s)	623, 2377
Csp6I	GTAC	4 cut(s)	321, 923, 1015, 2447
CspCI	CAANNNNNGTGG	2 cut(s)	1631, 1666
CviQI	GTAC	4 cut(s)	321, 923, 1015, 2447
DdeI	CTNAG	5 cut(s)	977, 1428, 2078, 2315, 2966
DpnI	GATC	8 cut(s)	770, 1361, 1493, 1732, 2346, 2358, 2493, 2937
DpnII	GATC	8 cut(s)	768, 1359, 1491, 1730, 2344, 2356, 2491, 2935
DraI	TTTAAA	1 cut(s)	547
DraIII	CACNNNGTG	1 cut(s)	1593
DriI	GACNNNNNGTC	1 cut(s)	1645
EaeI	YGGCCR	1 cut(s)	3100
Eam1104I	CTCTTC	4 cut(s)	90, 172, 1192, 1572
Eam1105I	GACNNNNNGTC	1 cut(s)	1645
EarI	CTCTTC	4 cut(s)	90, 172, 1192, 1572
EciI	GGCGGA	2 cut(s)	149, 234
Ecl136II	GAGCTC	1 cut(s)	1996
Eco105I	TACGTA	1 cut(s)	1018
Eco130I	CCWWGG	3 cut(s)	2004, 2010, 2462
Eco24I	GRGCYC	2 cut(s)	1998, 2406
Eco31I	GGTCTC	1 cut(s)	1373
Eco47I	GGWCC	2 cut(s)	623, 2377
Eco53kI	GAGCTC	1 cut(s)	1996
Eco57I	CTGAAG	4 cut(s)	950, 1674, 2076, 2891
Eco91I	GGTNACC	1 cut(s)	2791
EcoICRI	GAGCTC	1 cut(s)	1996
EcoO109I	RGGNCCY	2 cut(s)	623, 2377
EcoO65I	GGTNACC	1 cut(s)	2791
EcoRI	GAATTC	4 cut(s)	796, 1654, 1963, 2266
EcoRII	CCWGG	2 cut(s)	612, 2261
EcoT14I	CCWWGG	3 cut(s)	2004, 2010, 2462
EcoT22I	ATGCAT	2 cut(s)	678, 1213
EcoT38I	GRGCYC	2 cut(s)	1998, 2406
ErhI	CCWWGG	3 cut(s)	2004, 2010, 2462
FaqI	GGGAC	3 cut(s)	1515, 1548, 2843
FauI	CCCGC	1 cut(s)	3158
FauNDI	CATATG	2 cut(s)	1213, 2998
FblI	GTMKAC	3 cut(s)	905, 1329, 2184
Fnu4HI	GCNGC	3 cut(s)	163, 1845, 2760
FriOI	GRGCYC	2 cut(s)	1998, 2406
Fsp4HI	GCNGC	3 cut(s)	163, 1845, 2760
FspBI	CTAG	8 cut(s)	785, 1071, 1677, 1805, 1929, 2463, 2624, 2739
GlaI	GCGC	1 cut(s)	1872
GluI	GCNGC	3 cut(s)	163, 1845, 2760
GsaI	CCCAGC	2 cut(s)	2781, 2829
GsuI	CTGGAG	1 cut(s)	2966
HaeIII	GGCC	3 cut(s)	1809, 2009, 3102
HapII	CCGG	4 cut(s)	511, 754, 1609, 3103
HhaI	GCGC	1 cut(s)	1873
Hin6I	GCGC	1 cut(s)	1871
HinP1I	GCGC	1 cut(s)	1871
HincII	GTYRAC	1 cut(s)	2185
HindII	GTYRAC	1 cut(s)	2185
HindIII	AAGCTT	3 cut(s)	848, 1480, 2984
HinfI	GANTC	8 cut(s)	314, 680, 947, 1604, 1816, 2054, 2226, 3122
HpaII	CCGG	4 cut(s)	511, 754, 1609, 3103
HphI	GGTGA	8 cut(s)	184, 192, 215, 1106, 1150, 2651, 2785, 3071
Hpy166II	GTNNAC	9 cut(s)	372, 412, 814, 906, 1330, 1898, 2177, 2185, 2677
Hpy188I	TCNGA	9 cut(s)	685, 1359, 1429, 1585, 1684, 2046, 2079, 2158, 2316
Hpy8I	GTNNAC	9 cut(s)	372, 412, 814, 906, 1330, 1898, 2177, 2185, 2677
Hpy99I	CGWCG	1 cut(s)	458
HpyCH4III	ACNGT	5 cut(s)	1856, 2074, 2581, 2978, 3021
HpyCH4IV	ACGT	5 cut(s)	408, 414, 442, 1017, 2727
HpyF3I	CTNAG	5 cut(s)	977, 1428, 2078, 2315, 2966
HpySE526I	ACGT	5 cut(s)	408, 414, 442, 1017, 2727
HspAI	GCGC	1 cut(s)	1871
KpnI	GGTACC	1 cut(s)	926
KroI	GCCGGC	1 cut(s)	3102
KroNI	GCCGGC	1 cut(s)	3104
Kzo9I	GATC	8 cut(s)	768, 1359, 1491, 1730, 2344, 2356, 2491, 2935
LguI	GCTCTTC	2 cut(s)	172, 1572
LmnI	GCTCC	3 cut(s)	513, 2464, 2470
Lsp1109I	GCAGC	1 cut(s)	2771
LweI	GCATC	9 cut(s)	636, 736, 820, 1291, 1384, 1617, 1716, 2022, 2229
MaeI	CTAG	8 cut(s)	785, 1071, 1677, 1805, 1929, 2463, 2624, 2739
MaeII	ACGT	5 cut(s)	408, 414, 442, 1017, 2727
MaeIII	GTNAC	7 cut(s)	478, 1753, 2362, 2612, 2791, 3015, 3059
MalI	GATC	8 cut(s)	770, 1361, 1493, 1732, 2346, 2358, 2493, 2937
MbiI	CCGCTC	4 cut(s)	111, 165, 516, 1384
MboI	GATC	8 cut(s)	768, 1359, 1491, 1730, 2344, 2356, 2491, 2935
MhlI	GDGCHC	4 cut(s)	1998, 2179, 2406, 2475
MlyI	GAGTC	2 cut(s)	308, 2048
MmeI	TCCRAC	5 cut(s)	1033, 1111, 1608, 1940, 2637
Mph1103I	ATGCAT	2 cut(s)	678, 1213
MroNI	GCCGGC	1 cut(s)	3102
MroXI	GAANNNNTTC	3 cut(s)	342, 1616, 2418
MslI	CAYNNNNRTG	4 cut(s)	276, 1181, 1212, 2330
MspCI	CTTAAG	1 cut(s)	635
MspI	CCGG	4 cut(s)	511, 754, 1609, 3103
MspR9I	CCNGG	5 cut(s)	511, 614, 755, 1609, 2263
MssI	GTTTAAAC	1 cut(s)	547
Mva1269I	GAATGC	4 cut(s)	1767, 1873, 1938, 2902
MvaI	CCWGG	2 cut(s)	614, 2263
MvnI	CGCG	1 cut(s)	3120
NaeI	GCCGGC	1 cut(s)	3104
NciI	CCSGG	3 cut(s)	511, 755, 1609
NcoI	CCATGG	1 cut(s)	2010
NdeI	CATATG	2 cut(s)	1213, 2998
NdeII	GATC	8 cut(s)	768, 1359, 1491, 1730, 2344, 2356, 2491, 2935
NgoMIV	GCCGGC	1 cut(s)	3102
NlaIV	GGNNCC	5 cut(s)	624, 924, 2378, 2460, 2661
NmeAIII	GCCGAG	2 cut(s)	600, 2624
NmuCI	GTSAC	3 cut(s)	2791, 3015, 3059
NsiI	ATGCAT	2 cut(s)	678, 1213
NspI	RCATGY	3 cut(s)	865, 2191, 2701
PagI	TCATGA	2 cut(s)	1494, 1798
PciI	ACATGT	2 cut(s)	2187, 2697
PciSI	GCTCTTC	2 cut(s)	172, 1572
PctI	GAATGC	4 cut(s)	1767, 1873, 1938, 2902
PdiI	GCCGGC	1 cut(s)	3104
PdmI	GAANNNNTTC	3 cut(s)	342, 1616, 2418
PfeI	GAWTC	6 cut(s)	680, 947, 1604, 1816, 2226, 3122
PflMI	CCANNNNNTGG	1 cut(s)	619
PfoI	TCCNGGA	2 cut(s)	1607, 2261
PkrI	GCNGC	3 cut(s)	164, 1846, 2761
PleI	GAGTC	2 cut(s)	308, 2048
PmeI	GTTTAAAC	1 cut(s)	547
PpsI	GAGTC	2 cut(s)	308, 2048
Ppu21I	YACGTR	2 cut(s)	443, 1018
PpuMI	RGGWCCY	2 cut(s)	623, 2377
PscI	ACATGT	2 cut(s)	2187, 2697
PshBI	ATTAAT	3 cut(s)	1454, 2273, 2517
PsiI	TTATAA	1 cut(s)	846
Psp124BI	GAGCTC	1 cut(s)	1998
Psp1406I	AACGTT	1 cut(s)	408
Psp5II	RGGWCCY	2 cut(s)	623, 2377
Psp6I	CCWGG	2 cut(s)	612, 2261
PspEI	GGTNACC	1 cut(s)	2791
PspFI	CCCAGC	2 cut(s)	2777, 2825
PspGI	CCWGG	2 cut(s)	612, 2261
PspN4I	GGNNCC	5 cut(s)	624, 924, 2378, 2460, 2661
PspPI	GGNCC	2 cut(s)	623, 2377
PspPPI	RGGWCCY	2 cut(s)	623, 2377
RsaI	GTAC	4 cut(s)	322, 924, 1016, 2448
RsaNI	GTAC	4 cut(s)	321, 923, 1015, 2447
RseI	CAYNNNNRTG	4 cut(s)	276, 1181, 1212, 2330
SacI	GAGCTC	1 cut(s)	1998
SalI	GTCGAC	1 cut(s)	2183
SapI	GCTCTTC	2 cut(s)	172, 1572
SatI	GCNGC	3 cut(s)	163, 1845, 2760
Sau3AI	GATC	8 cut(s)	768, 1359, 1491, 1730, 2344, 2356, 2491, 2935
Sau96I	GGNCC	2 cut(s)	623, 2377
SchI	GAGTC	2 cut(s)	308, 2048
ScrFI	CCNGG	5 cut(s)	511, 614, 755, 1609, 2263
SduI	GDGCHC	4 cut(s)	1998, 2179, 2406, 2475
SfaNI	GCATC	9 cut(s)	636, 736, 820, 1291, 1384, 1617, 1716, 2022, 2229
SfcI	CTRYAG	2 cut(s)	1704, 1824
SinI	GGWCC	2 cut(s)	623, 2377
SmiMI	CAYNNNNRTG	4 cut(s)	276, 1181, 1212, 2330
SmlI	CTYRAG	3 cut(s)	375, 635, 1167
SmoI	CTYRAG	3 cut(s)	375, 635, 1167
SnaBI	TACGTA	1 cut(s)	1018
SspI	AATATT	2 cut(s)	1712, 3094
SspMI	CTAG	8 cut(s)	785, 1071, 1677, 1805, 1929, 2463, 2624, 2739
SstI	GAGCTC	1 cut(s)	1998
StyD4I	CCNGG	5 cut(s)	509, 612, 753, 1607, 2261
StyI	CCWWGG	3 cut(s)	2004, 2010, 2462
TaaI	ACNGT	5 cut(s)	1856, 2074, 2581, 2978, 3021
TaiI	ACGT	5 cut(s)	411, 417, 445, 1020, 2730
TaqI	TCGA	8 cut(s)	255, 453, 668, 1062, 1112, 1371, 2184, 2940
TatI	WGTACW	1 cut(s)	2446
TauI	GCSGC	2 cut(s)	165, 1847
TfiI	GAWTC	6 cut(s)	680, 947, 1604, 1816, 2226, 3122
TscAI	CASTG	4 cut(s)	840, 2769, 2983, 3076
TseFI	GTSAC	3 cut(s)	2791, 3015, 3059
TseI	GCWGC	1 cut(s)	2759
Tsp45I	GTSAC	3 cut(s)	2791, 3015, 3059
TspGWI	ACGGA	1 cut(s)	565
TspRI	CASTG	4 cut(s)	840, 2769, 2983, 3076
Van91I	CCANNNNNTGG	1 cut(s)	619
Vha464I	CTTAAG	1 cut(s)	635
VneI	GTGCAC	1 cut(s)	2175
VpaK11BI	GGWCC	2 cut(s)	623, 2377
VspI	ATTAAT	3 cut(s)	1454, 2273, 2517
XapI	RAATTY	5 cut(s)	796, 1654, 1963, 2266, 2921
XbaI	TCTAGA	1 cut(s)	1928
XceI	RCATGY	3 cut(s)	865, 2191, 2701
XmaJI	CCTAGG	1 cut(s)	2462
XmiI	GTMKAC	3 cut(s)	905, 1329, 2184
XmnI	GAANNNNTTC	3 cut(s)	342, 1616, 2418
XspI	CTAG	8 cut(s)	785, 1071, 1677, 1805, 1929, 2463, 2624, 2739
Zsp2I	ATGCAT	2 cut(s)	678, 1213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.