Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0011231

Physical Location & Seq

Genomic Coordinates Forward (+)

69013916 .. 69017287

Gene Structure 3372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G042680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3372 bp

ATGATCCACCTTGGGAGAGAATTTTATGTAGGAAGCAAAGATGGCATAATTCCCTCTCTTACTCGTACCTTTGTGGTCGAGGATGTTAATTATGATCCACCTTCTGTTAACTTTGATGAATCATATATATATATATATATATATATGTATTGCGAAAACGAAAACATATATGAAGTAAGAAAGCACATCACTCTTCTTCACTACAACACCATTATGTTCCGCTCTTTCTTCATTACAGGACTATCTTCTCCCACTCACAAAGCAAAACTCCGCCGCTCTTCACACCCTGCTTTCACTTCTCTCACCGCCTCACCTCTCCTCTCAAACTCACTTCACCACACCAACCAATCATCTCCGCCCCACATCGAAACCCAAACCCCACATTCCAATGCTACTTACGGCTATCTTCTCAATCGGTTCAACGACTCCCGTACCTCAAACGAAGCCGAAACCTTTCATTTGCGGATTTTCAAACACGGGTTCACTCAAGATTTGTTCTTGTGCAATACCCTCATCAACGTTTACGTCAAAATCGGTGCTTTGGCTAATGCGCGTAAGCTGTTCGACGAAATGCCTGAGAAGAACTCGGTTACTTGGGCTTGCTTGATTTCGGGCTATGCCCGGAGCGGTGTGCCAGAGGAGGCGTGTGGGCAGTTTAAACGGATGGTCTGTGATGGTTTCGTGCCGAGTGTTTATGCTTTTGGGAGTGTTTTAAGGGCTTGCCAGGAGTTGGGTCCTTGCAAACTTAAGTTTGGGATGCAAGTTCAGGGGTTGTTATCGAAAATGCATGATTCGGATGTGTTGTTAGCTAATGTGCTGATGTCAATGTATGGGAGATGTTTGGGTTCTGCGGATGATGCTTACCGGGCTTTTTGTGAGATCAAGTTTAGAAATTTAGTGTCTTGGAATTCTATTATTTCGGTTTACTGCCAAAGAGGGGATGCAGTGTTTGCTTATAAGCTTTTCTCAAAGATGCAGAAGGATGGTGTGGATTTTGATTTGCAACCGAATGAGTATACTTTTGGTAGCTTGGTACCTGCCTGTTGTGCTTTGGCTGATTCTGGTTTGGTTTTGCTTCAGCAAATGCTGAGCAGGGTCAGCAAAGCTGGATTTTTACAGGATTTGTATGTAGGAAGTGCTTTGGTTAGTGGATTTGCGAGGGTTGGATTAGTCGATTACGCTAGGAAGATTTTTGAGCAGATGGGTGAGAGGAATGTAGTTTCGATGAATGGGTTGATGGTTGGACTGGTGAGGCAGAAGCGAGGAGAAGAAGCCACTCAAGTTTTCATGGAGATGAAGGACTTGGTTGGAATAAATATTGATTCGCTTGTGGTTCTTTTAAGTTCATTCACTGAATTTTCTGCTTTAGAGGAAGGGAAAAGAAAGGGAAGAGAAGTTCATGCATATGTAATTGCAACTGGCTTGATTCACAGCAAGGTTGCAATAGAGAATGGGCTTGTAAATATGTATGCCAAATGTGGTGCTATTGATGATGCTTGTTCAGTTTTTAGGCTCATGGTAGACAAAGACTTAATCTCATGGAACTCTCTGATCTCTGGTCTCGACCAGAACAAGTGTTTTGAAGATGCAGTCATTAAGTTCTCTGAAATGAGAACATCTGAGTTGACACCTTCAATTTTCACATTAATTAGTGCTTTGAGTTCATGTGCAAGCTTGGAGTGGATCATGATGGGACAGCAAATACATTGTGAAGCACTTAAATTGGGACTTGATTTGGATGTTTCGGTTTCAAATGCTCTTCTTGCATTGTATTCTGACACAGGGTGTCTTAATGAATCCCGGAATGTTTTCTTCTTGATGCAGGAATATGACCAAGTGTCGTGGAATTCCATAGTTGGGGCTTTGGCTAGTTCAGAGGCTTCAGTTTTTGAAGCTGTAGAATATTTATTGGAAATGATGCGATCTGGATGGGAACTTAATAGAGTAACATTTATTAGCATTCTTTCTGCAGTTTCATCTCTCTCACTTCACGAGCTAGGCCAGCAGATTCATGCTGTAGTTTTAAAATACAATGCTGTGAAGGACTGTGCTATTGAGAATGCACTTATTGCTTGCTATGGAAAGTGTGGACAGATAGATGACTGTGAGAAGATATTTTCCAGAATGCCTGAAAGAAGGGATGAAGTAAGTTGGAATTCCATGATTTCTGGATACATACATAATGAGCTCTTGCCCAGGGCCATGGATTTGGTCTGGTTTATGATTGAGAGGGGTCAGAAATTAGACTCTTTTACTTTTGCTACTGTTCTGAGTGCTTGTGCTTCAGTTGCAACATTAGAGCGTGGGATGGAAGTTCATGCTTGTGCGGTAAGAGCTTATTTGGAATCTGATGTTGTAGTTGGGAGTGCACTCGTCGACATGTATTCAAAGTGTGGAAGGATTGATTATGCTTCAAGATTCTTTGAGTTGATGCCAGTAAGGAATGTGTATTCCTGGAATTCATTAATATCAGGATATGCTCGCAATGGAGATGGACAGAAAGCTCTGAGGCTTTTCACACAAATGAAGCAACAAGATCAGCCACCAGATCACGTTACCTTTGTTGGGGTCCTATCAGCTTGTAGCCACGCAGGGCTTGTGGATGAAGGGTTTCAGCATTTCAATTCCATGAGTAAAGTACATGGACTGGCTCCTAGGATGGAGCACTTTTCATGTATGGTTGATCTTCTTGGAAGGGCAGGAAAAATTAATATGATAGAGGACTTCATAAAAAAAATGCCGTTGAAGCCTAATGTGCTTATTTGGAGGACAGTTTTAGGGGCTTGTTGCCGAGGCAATGGTCGTAACACAGAGCTAGGCAGGATGGCTGGTGAAATGCTATTGGAGTTGGAACCCCAAAATGCTGTGAACTATGTGCTTCTTGCTAACATGTATGCTTCTGGTGGGAAGTGGGATGACGTGGCAAAGGCTAGGATGACAATGAGAAAGGCAGCAGTGAAGAAGGAAGCTGGGTGCAGTTGGGTCACCATGAAAGATGGGGTTCATGTTTTTGTAGCTGGGGACAAATTACACCCAGAGAAAGATTTGATATATGAAAAACTGAAGGAACTTAACGAGAAAATGAGGAATGCTGGATATGTGCCTGAAACAAAATTTGCACTATACGATCTCGAACTGGAGAACAAGGAAGAACTCCTGAGTTATCACAGTGAAAAGCTTGCTGTTGCATATGTTCTTACTCGCCAGTCACAGTTGCCTATAAGGATTATGAAAAACCTTCGGGTTTGTGGTGACTGCCACACTGCCTTCAAATACATATCAAATATTGTTGGCCGGCAAATAGTATTACGCGATTCAAACAGATTTCATCACTTTCAAGATGGCAAGTGTTCTTGCGGGGATTTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

1123

Amino Acids

126.09

Weight (kDa)

6.46

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	194 - 241	1.6e-07	PPR repeat family
PPR_2	PF13041	298 - 349	3.4e-11	PPR repeat family
PPR	PF01535	300 - 330	2.6e-07	PPR repeat
PPR_2	PF13041	714 - 761	5e-08	PPR repeat family
PPR_2	PF13041	814 - 862	1.3e-12	PPR repeat family
PPR_1	PF12854	814 - 843	8.8e-06	PPR repeat
PPR	PF01535	817 - 844	6e-08	PPR repeat
E_motif	PF20431	936 - 995	2.2e-19	E motif
DYW_deaminase	PF14432	1032 - 1123	7e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09950 AT5G09950 AT5G09950
fragaria_vesca	FvH4_6g40670
malus_domestica	MD09G1126300.v1.1
prunus_persica	Prupe.3G198300_v2.0.a1
pyrus_communis	pycom09g05060
rosa_chinensis	RchiOBHm_Chr2g0156061 RchiOBHm_Chr2g0156111
rosa_laevigata	RLG00000020884 RLG00000020888
rosa_multiflora	Rmu_sc0000260.1_g000021 Rmu_sc0011922.1_g000009
rosa_roxburghii	Rroxscaffold_2G00093230
rosa_rugosa	Rorug02G0451500
rosa_samantha	Rh2AG518400 Rh2BG529500 Rh2CG503100 Rh2DG538700
rosa_wichuraiana	Rw2G042680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	957
Acc36I	ACCTGC	1 cut(s)	1045
Acc65I	GGTACC	1 cut(s)	1033
AccB1I	GGYRCC	1 cut(s)	1033
AccB7I	CCANNNNNTGG	1 cut(s)	730
AccBSI	CCGCTC	3 cut(s)	222, 276, 627
AccI	GTMKAC	3 cut(s)	1016, 1521, 2376
AccII	CGCG	2 cut(s)	553, 3312
AclI	AACGTT	1 cut(s)	519
AclWI	GGATC	2 cut(s)	89, 1691
AcoI	YGGCCR	1 cut(s)	3292
AcsI	RAATTY	8 cut(s)	20, 892, 907, 1355, 1846, 2155, 2458, 3113
AcuI	CTGAAG	4 cut(s)	1061, 1866, 2268, 3083
AdeI	CACNNNGTG	1 cut(s)	1785
AfaI	GTAC	4 cut(s)	67, 433, 1035, 2640
AfiI	CCNNNNNNNGG	4 cut(s)	730, 937, 1857, 2565
AflII	CTTAAG	1 cut(s)	746
AflIII	ACRYGT	2 cut(s)	2379, 2889
AhdI	GACNNNNNGTC	1 cut(s)	1837
AjiI	CACGTC	1 cut(s)	2920
AjnI	CCWGG	3 cut(s)	723, 2195, 2453
AloI	GAACNNNNNNTCC	2 cut(s)	1380, 1412
Alw21I	GWGCWC	3 cut(s)	2190, 2371, 2667
Alw26I	GTCTC	1 cut(s)	1565
Alw44I	GTGCAC	1 cut(s)	2367
AlwI	GGATC	2 cut(s)	89, 1691
AoxI	GGCC	3 cut(s)	1999, 2199, 3292
ApaLI	GTGCAC	1 cut(s)	2367
ApeKI	GCWGC	1 cut(s)	2951
ApoI	RAATTY	8 cut(s)	20, 892, 907, 1355, 1846, 2155, 2458, 3113
AseI	ATTAAT	3 cut(s)	1646, 2465, 2709
Asp700I	GAANNNNTTC	3 cut(s)	453, 1808, 2610
Asp718I	GGTACC	1 cut(s)	1033
AspA2I	CCTAGG	1 cut(s)	2654
AspLEI	GCGC	1 cut(s)	553
AspS9I	GGNCC	3 cut(s)	734, 2199, 2569
AsuC2I	CCSGG	3 cut(s)	622, 866, 1801
AsuHPI	GGTGA	8 cut(s)	295, 303, 326, 1217, 1261, 2843, 2977, 3263
AvaII	GGWCC	2 cut(s)	734, 2569
AvrII	CCTAGG	1 cut(s)	2654
BaeGI	GKGCMC	1 cut(s)	2371
BaeI	ACNNNNGTAYC	2 cut(s)	415, 448
BanI	GGYRCC	1 cut(s)	1033
BanII	GRGCYC	1 cut(s)	2190
BauI	CACGAG	1 cut(s)	1991
Bbv12I	GWGCWC	3 cut(s)	2190, 2371, 2667
BbvI	GCAGC	1 cut(s)	2963
BceAI	ACGGC	2 cut(s)	415, 2725
BciT130I	CCWGG	3 cut(s)	725, 2197, 2455
BciVI	GTATCC	1 cut(s)	2165
BcnI	CCSGG	3 cut(s)	622, 866, 1801
BcoDI	GTCTC	1 cut(s)	1565
BfaI	CTAG	6 cut(s)	1182, 1869, 1997, 2655, 2816, 2931
BfmI	CTRYAG	3 cut(s)	1896, 1968, 2016
BfrI	CTTAAG	1 cut(s)	746
BfuAI	ACCTGC	1 cut(s)	1045
BfuI	GTATCC	1 cut(s)	2165
BisI	GCNGC	2 cut(s)	274, 2952
BlnI	CCTAGG	1 cut(s)	2654
BlpI	GCTNAGC	1 cut(s)	1088
BlsI	GCNGC	2 cut(s)	275, 2953
Bme1390I	CCNGG	6 cut(s)	622, 725, 866, 1801, 2197, 2455
Bme18I	GGWCC	2 cut(s)	734, 2569
BmeRI	GACNNNNNGTC	1 cut(s)	1837
BmgBI	CACGTC	1 cut(s)	2920
BmgT120I	GGNCC	3 cut(s)	734, 2199, 2569
BmiI	GGNNCC	5 cut(s)	735, 1035, 2570, 2652, 2853
BmrFI	CCNGG	6 cut(s)	622, 725, 866, 1801, 2197, 2455
BmsI	GCATC	9 cut(s)	747, 847, 931, 963, 1483, 1576, 1809, 1908, 2421
BplI	GAGNNNNNCTC	2 cut(s)	569, 601
BpmI	CTGGAG	1 cut(s)	3158
Bpu1102I	GCTNAGC	1 cut(s)	1088
BpuEI	CTTGAG	2 cut(s)	471, 1263
BpuMI	CCSGG	3 cut(s)	622, 866, 1801
BsaI	GGTCTC	1 cut(s)	1565
BsaJI	CCNNGG	6 cut(s)	10, 2195, 2196, 2202, 2654, 2791
Bsc4I	CCNNNNNNNGG	4 cut(s)	730, 937, 1857, 2565
Bse118I	RCCGGY	1 cut(s)	3294
Bse1I	ACTGG	6 cut(s)	1251, 1423, 2435, 2652, 3141, 3205
Bse3DI	GCAATG	2 cut(s)	2491, 2803
BseBI	CCWGG	3 cut(s)	725, 2197, 2455
BseDI	CCNNGG	6 cut(s)	10, 2195, 2196, 2202, 2654, 2791
BseLI	CCNNNNNNNGG	4 cut(s)	730, 937, 1857, 2565
BseMI	GCAATG	2 cut(s)	2491, 2803
BseMII	CTCAG	6 cut(s)	567, 1079, 1611, 2261, 2498, 3149
BseNI	ACTGG	6 cut(s)	1251, 1423, 2435, 2652, 3141, 3205
BseRI	GAGGAG	3 cut(s)	308, 653, 1278
BseSI	GKGCMC	1 cut(s)	2371
BseXI	GCAGC	1 cut(s)	2963
BseYI	CCCAGC	2 cut(s)	2969, 3017
BsgI	GTGCAG	1 cut(s)	2995
Bsh1236I	CGCG	2 cut(s)	553, 3312
BshFI	GGCC	3 cut(s)	2001, 2201, 3294
BshNI	GGYRCC	1 cut(s)	1033
BsiHKAI	GWGCWC	3 cut(s)	2190, 2371, 2667
BsiSI	CCGG	4 cut(s)	622, 865, 1801, 3295
BslFI	GGGAC	3 cut(s)	1707, 1740, 3035
BslI	CCNNNNNNNGG	4 cut(s)	730, 937, 1857, 2565
BsmAI	GTCTC	1 cut(s)	1565
BsmFI	GGGAC	3 cut(s)	1707, 1740, 3035
BsmI	GAATGC	4 cut(s)	1959, 2065, 2130, 3094
BsnI	GGCC	3 cut(s)	2001, 2201, 3294
Bso31I	GGTCTC	1 cut(s)	1565
Bsp1286I	GDGCHC	3 cut(s)	2190, 2371, 2667
Bsp1720I	GCTNAGC	1 cut(s)	1088
Bsp19I	CCATGG	1 cut(s)	2202
BspANI	GGCC	3 cut(s)	2001, 2201, 3294
BspCNI	CTCAG	6 cut(s)	568, 1080, 1612, 2262, 2499, 3150
BspFNI	CGCG	2 cut(s)	553, 3312
BspHI	TCATGA	1 cut(s)	1686
BspLI	GGNNCC	5 cut(s)	735, 1035, 2570, 2652, 2853
BspMAI	CTGCAG	1 cut(s)	1972
BspMI	ACCTGC	1 cut(s)	1045
BspPI	GGATC	2 cut(s)	89, 1691
BspQI	GCTCTTC	2 cut(s)	283, 1764
BspT107I	GGYRCC	1 cut(s)	1033
BspTI	CTTAAG	1 cut(s)	746
BspTNI	GGTCTC	1 cut(s)	1565
BsrBI	CCGCTC	3 cut(s)	222, 276, 627
BsrDI	GCAATG	2 cut(s)	2491, 2803
BsrFI	RCCGGY	1 cut(s)	3294
BsrI	ACTGG	6 cut(s)	1251, 1423, 2435, 2652, 3141, 3205
BssAI	RCCGGY	1 cut(s)	3294
BssECI	CCNNGG	6 cut(s)	10, 2195, 2196, 2202, 2654, 2791
BssNAI	GTATAC	1 cut(s)	1017
BssSI	CACGAG	1 cut(s)	1991
BssT1I	CCWWGG	3 cut(s)	10, 2202, 2654
Bst1107I	GTATAC	1 cut(s)	1017
Bst2BI	CACGAG	1 cut(s)	1991
Bst2UI	CCWGG	3 cut(s)	725, 2197, 2455
Bst4CI	ACNGT	6 cut(s)	2048, 2105, 2266, 2773, 3170, 3213
Bst6I	CTCTTC	4 cut(s)	198, 283, 1384, 1764
BstAFI	CTTAAG	1 cut(s)	746
BstAPI	GCANNNNNTGC	2 cut(s)	950, 2069
BstC8I	GCNNGC	8 cut(s)	601, 721, 1672, 2003, 2074, 2482, 3180, 3296
BstDEI	CTNAG	6 cut(s)	576, 1088, 1620, 2270, 2507, 3158
BstDSI	CCRYGG	1 cut(s)	2202
BstEII	GGTNACC	1 cut(s)	2983
BstFNI	CGCG	2 cut(s)	553, 3312
BstHHI	GCGC	1 cut(s)	553
BstMAI	GTCTC	1 cut(s)	1565
BstNI	CCWGG	3 cut(s)	725, 2197, 2455
BstNSI	RCATGY	2 cut(s)	2383, 2893
BstPI	GGTNACC	1 cut(s)	2983
BstSCI	CCNGG	6 cut(s)	620, 723, 864, 1799, 2195, 2453
BstSFI	CTRYAG	3 cut(s)	1896, 1968, 2016
BstSLI	GKGCMC	1 cut(s)	2371
BstUI	CGCG	2 cut(s)	553, 3312
BstV1I	GCAGC	1 cut(s)	2963
BstXI	CCANNNNNNTGG	2 cut(s)	2203, 2209
BstZ17I	GTATAC	1 cut(s)	1017
BsuI	GTATCC	1 cut(s)	2165
BsuRI	GGCC	3 cut(s)	2001, 2201, 3294
BtgI	CCRYGG	1 cut(s)	2202
BtrI	CACGTC	1 cut(s)	2920
BtsI	GCAGTG	3 cut(s)	951, 2961, 3261
BtsIMutI	CAGTG	5 cut(s)	951, 1350, 2961, 3175, 3261
BveI	ACCTGC	1 cut(s)	1045
Cac8I	GCNNGC	8 cut(s)	601, 721, 1672, 2003, 2074, 2482, 3180, 3296
CciI	TCATGA	1 cut(s)	1686
CfoI	GCGC	1 cut(s)	553
Cfr10I	RCCGGY	1 cut(s)	3294
Cfr13I	GGNCC	3 cut(s)	734, 2199, 2569
Csp6I	GTAC	4 cut(s)	66, 432, 1034, 2639
CspCI	CAANNNNNGTGG	2 cut(s)	1823, 1858
CviQI	GTAC	4 cut(s)	66, 432, 1034, 2639
DdeI	CTNAG	6 cut(s)	576, 1088, 1620, 2270, 2507, 3158
DraI	TTTAAA	2 cut(s)	658, 2025
DraIII	CACNNNGTG	1 cut(s)	1785
DriI	GACNNNNNGTC	1 cut(s)	1837
EaeI	YGGCCR	1 cut(s)	3292
Eam1104I	CTCTTC	4 cut(s)	198, 283, 1384, 1764
Eam1105I	GACNNNNNGTC	1 cut(s)	1837
EarI	CTCTTC	4 cut(s)	198, 283, 1384, 1764
EciI	GGCGGA	2 cut(s)	260, 345
Ecl136II	GAGCTC	1 cut(s)	2188
Eco130I	CCWWGG	3 cut(s)	10, 2202, 2654
Eco24I	GRGCYC	1 cut(s)	2190
Eco31I	GGTCTC	1 cut(s)	1565
Eco47I	GGWCC	2 cut(s)	734, 2569
Eco53kI	GAGCTC	1 cut(s)	2188
Eco57I	CTGAAG	4 cut(s)	1061, 1866, 2268, 3083
Eco91I	GGTNACC	1 cut(s)	2983
EcoICRI	GAGCTC	1 cut(s)	2188
EcoO109I	RGGNCCY	2 cut(s)	734, 2569
EcoO65I	GGTNACC	1 cut(s)	2983
EcoRI	GAATTC	4 cut(s)	907, 1846, 2155, 2458
EcoRII	CCWGG	3 cut(s)	723, 2195, 2453
EcoT14I	CCWWGG	3 cut(s)	10, 2202, 2654
EcoT22I	ATGCAT	2 cut(s)	789, 1405
EcoT38I	GRGCYC	1 cut(s)	2190
ErhI	CCWWGG	3 cut(s)	10, 2202, 2654
FaqI	GGGAC	3 cut(s)	1707, 1740, 3035
FauI	CCCGC	1 cut(s)	3350
FauNDI	CATATG	2 cut(s)	1405, 3190
FblI	GTMKAC	3 cut(s)	1016, 1521, 2376
Fnu4HI	GCNGC	2 cut(s)	274, 2952
FriOI	GRGCYC	1 cut(s)	2190
Fsp4HI	GCNGC	2 cut(s)	274, 2952
FspBI	CTAG	6 cut(s)	1182, 1869, 1997, 2655, 2816, 2931
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	2 cut(s)	274, 2952
GsaI	CCCAGC	2 cut(s)	2973, 3021
GsuI	CTGGAG	1 cut(s)	3158
HaeIII	GGCC	3 cut(s)	2001, 2201, 3294
HapII	CCGG	4 cut(s)	622, 865, 1801, 3295
HhaI	GCGC	1 cut(s)	553
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HincII	GTYRAC	3 cut(s)	109, 1626, 2377
HindII	GTYRAC	3 cut(s)	109, 1626, 2377
HindIII	AAGCTT	3 cut(s)	959, 1672, 3176
HpaI	GTTAAC	1 cut(s)	109
HpaII	CCGG	4 cut(s)	622, 865, 1801, 3295
HphI	GGTGA	8 cut(s)	295, 303, 326, 1217, 1261, 2843, 2977, 3263
Hpy99I	CGWCG	2 cut(s)	569, 2378
HpyCH4III	ACNGT	6 cut(s)	2048, 2105, 2266, 2773, 3170, 3213
HpyCH4IV	ACGT	4 cut(s)	519, 525, 2553, 2919
HpyF3I	CTNAG	6 cut(s)	576, 1088, 1620, 2270, 2507, 3158
HpySE526I	ACGT	4 cut(s)	519, 525, 2553, 2919
HspAI	GCGC	1 cut(s)	551
KpnI	GGTACC	1 cut(s)	1037
KroI	GCCGGC	1 cut(s)	3294
KroNI	GCCGGC	1 cut(s)	3296
KspAI	GTTAAC	1 cut(s)	109
LguI	GCTCTTC	2 cut(s)	283, 1764
LmnI	GCTCC	3 cut(s)	624, 2656, 2662
Lsp1109I	GCAGC	1 cut(s)	2963
LweI	GCATC	9 cut(s)	747, 847, 931, 963, 1483, 1576, 1809, 1908, 2421
MaeI	CTAG	6 cut(s)	1182, 1869, 1997, 2655, 2816, 2931
MaeII	ACGT	4 cut(s)	519, 525, 2553, 2919
MaeIII	GTNAC	7 cut(s)	589, 1945, 2554, 2804, 2983, 3207, 3251
MbiI	CCGCTC	3 cut(s)	222, 276, 627
MhlI	GDGCHC	3 cut(s)	2190, 2371, 2667
MlyI	GAGTC	2 cut(s)	419, 2240
MmeI	TCCRAC	5 cut(s)	1144, 1222, 1288, 2132, 2829
Mph1103I	ATGCAT	2 cut(s)	789, 1405
MroNI	GCCGGC	1 cut(s)	3294
MroXI	GAANNNNTTC	3 cut(s)	453, 1808, 2610
MslI	CAYNNNNRTG	6 cut(s)	212, 387, 1292, 1404, 2322, 2522
MspCI	CTTAAG	1 cut(s)	746
MspI	CCGG	4 cut(s)	622, 865, 1801, 3295
MspR9I	CCNGG	6 cut(s)	622, 725, 866, 1801, 2197, 2455
MssI	GTTTAAAC	1 cut(s)	658
Mva1269I	GAATGC	4 cut(s)	1959, 2065, 2130, 3094
MvaI	CCWGG	3 cut(s)	725, 2197, 2455
MvnI	CGCG	2 cut(s)	553, 3312
NaeI	GCCGGC	1 cut(s)	3296
NciI	CCSGG	3 cut(s)	622, 866, 1801
NcoI	CCATGG	1 cut(s)	2202
NdeI	CATATG	2 cut(s)	1405, 3190
NgoMIV	GCCGGC	1 cut(s)	3294
NlaIV	GGNNCC	5 cut(s)	735, 1035, 2570, 2652, 2853
NmeAIII	GCCGAG	2 cut(s)	711, 2816
NmuCI	GTSAC	3 cut(s)	2983, 3207, 3251
NsiI	ATGCAT	2 cut(s)	789, 1405
NspI	RCATGY	2 cut(s)	2383, 2893
PagI	TCATGA	1 cut(s)	1686
PasI	CCCWGGG	1 cut(s)	2196
PciI	ACATGT	2 cut(s)	2379, 2889
PciSI	GCTCTTC	2 cut(s)	283, 1764
PctI	GAATGC	4 cut(s)	1959, 2065, 2130, 3094
PdiI	GCCGGC	1 cut(s)	3296
PdmI	GAANNNNTTC	3 cut(s)	453, 1808, 2610
PflMI	CCANNNNNTGG	1 cut(s)	730
PfoI	TCCNGGA	2 cut(s)	1799, 2453
PkrI	GCNGC	2 cut(s)	275, 2953
PleI	GAGTC	2 cut(s)	419, 2240
PmeI	GTTTAAAC	1 cut(s)	658
PpsI	GAGTC	2 cut(s)	419, 2240
PpuMI	RGGWCCY	2 cut(s)	734, 2569
PscI	ACATGT	2 cut(s)	2379, 2889
PshBI	ATTAAT	3 cut(s)	1646, 2465, 2709
PsiI	TTATAA	1 cut(s)	957
Psp124BI	GAGCTC	1 cut(s)	2190
Psp1406I	AACGTT	1 cut(s)	519
Psp5II	RGGWCCY	2 cut(s)	734, 2569
Psp6I	CCWGG	3 cut(s)	723, 2195, 2453
PspEI	GGTNACC	1 cut(s)	2983
PspFI	CCCAGC	2 cut(s)	2969, 3017
PspGI	CCWGG	3 cut(s)	723, 2195, 2453
PspN4I	GGNNCC	5 cut(s)	735, 1035, 2570, 2652, 2853
PspPI	GGNCC	3 cut(s)	734, 2199, 2569
PspPPI	RGGWCCY	2 cut(s)	734, 2569
PstI	CTGCAG	1 cut(s)	1972
RsaI	GTAC	4 cut(s)	67, 433, 1035, 2640
RsaNI	GTAC	4 cut(s)	66, 432, 1034, 2639
RseI	CAYNNNNRTG	6 cut(s)	212, 387, 1292, 1404, 2322, 2522
SacI	GAGCTC	1 cut(s)	2190
SalI	GTCGAC	1 cut(s)	2375
SapI	GCTCTTC	2 cut(s)	283, 1764
SatI	GCNGC	2 cut(s)	274, 2952
Sau96I	GGNCC	3 cut(s)	734, 2199, 2569
SchI	GAGTC	2 cut(s)	419, 2240
ScrFI	CCNGG	6 cut(s)	622, 725, 866, 1801, 2197, 2455
SduI	GDGCHC	3 cut(s)	2190, 2371, 2667
SfaNI	GCATC	9 cut(s)	747, 847, 931, 963, 1483, 1576, 1809, 1908, 2421
SfcI	CTRYAG	3 cut(s)	1896, 1968, 2016
SinI	GGWCC	2 cut(s)	734, 2569
SmiMI	CAYNNNNRTG	6 cut(s)	212, 387, 1292, 1404, 2322, 2522
SmlI	CTYRAG	3 cut(s)	486, 746, 1278
SmoI	CTYRAG	3 cut(s)	486, 746, 1278
SspI	AATATT	3 cut(s)	1318, 1904, 3286
SspMI	CTAG	6 cut(s)	1182, 1869, 1997, 2655, 2816, 2931
SstI	GAGCTC	1 cut(s)	2190
StyD4I	CCNGG	6 cut(s)	620, 723, 864, 1799, 2195, 2453
StyI	CCWWGG	3 cut(s)	10, 2202, 2654
TaaI	ACNGT	6 cut(s)	2048, 2105, 2266, 2773, 3170, 3213
TaiI	ACGT	4 cut(s)	522, 528, 2556, 2922
TaqI	TCGA	9 cut(s)	78, 366, 564, 779, 1173, 1223, 1563, 2376, 3132
TatI	WGTACW	1 cut(s)	2638
TauI	GCSGC	1 cut(s)	276
TscAI	CASTG	5 cut(s)	951, 1357, 2961, 3175, 3268
TseFI	GTSAC	3 cut(s)	2983, 3207, 3251
TseI	GCWGC	1 cut(s)	2951
Tsp45I	GTSAC	3 cut(s)	2983, 3207, 3251
TspGWI	ACGGA	1 cut(s)	676
TspRI	CASTG	5 cut(s)	951, 1357, 2961, 3175, 3268
Van91I	CCANNNNNTGG	1 cut(s)	730
Vha464I	CTTAAG	1 cut(s)	746
VneI	GTGCAC	1 cut(s)	2367
VpaK11BI	GGWCC	2 cut(s)	734, 2569
VspI	ATTAAT	3 cut(s)	1646, 2465, 2709
XapI	RAATTY	8 cut(s)	20, 892, 907, 1355, 1846, 2155, 2458, 3113
XceI	RCATGY	2 cut(s)	2383, 2893
XmaJI	CCTAGG	1 cut(s)	2654
XmiI	GTMKAC	3 cut(s)	1016, 1521, 2376
XmnI	GAANNNNTTC	3 cut(s)	453, 1808, 2610
XspI	CTAG	6 cut(s)	1182, 1869, 1997, 2655, 2816, 2931
Zsp2I	ATGCAT	2 cut(s)	789, 1405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.