Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011231

Physical Location & Seq

Genomic Coordinates Forward (+)

69818721 .. 69821434

Gene Structure 2714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020884

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2247 bp

ATGTTTGAGAGTGTCGATGAAAGGGACTTGAAAGTTGTCTCTCAATCCTTGTGTCCATTGACGATTTTTTCTCCATCTGTCTACCCCGAGAATAGCTACATTGTTCGAGCGGGTGAAGCGTGTGATCGGGTCATCTTCATCATAGAAGGCATAATTGAATTGACCGACACAACGTCTAACGGTGCTGAAACAACGGGTTCATCGTCAATGATTAAGACCGAGCGTCTTGAGAAAGGTCAGTACTATGGACAAGAATTATTGAATTGGGCATCATTGAACGACCAGCGCTTGTATGACGACTGCAAGCACACTCGTCCTATTTCGACCCGAGATGTCAAATGTCGTACCAAAGTCGAAGCCCTCTGTATCCAGGACTACGACTTATTTTTTTTAATACAACTTGTCAGCCGGGACTACATCTGGAGGCAGAATAAGTGGGTGAAGCGGACACTTCCCCATGACAACACTGATGAGACATTAAACAAGACAAACTTGCAGCCGGCAACAACAGAATTGGAGGAGATTGAGGAGTCAAAAAAGATGAAGATGAAGATGAAGAACATGGAATTAGATAAAGGTGGAGGAGAGCCAAGAGAAGACGTTGCGGATACATCCACTATTGTTGAACAGAGACTCGAACAGATGCTTTCCGAGCAGTTGGTTCTAGTCCGACAGATTCATGATGATGTGGCTACACAGGGACGAAGATTAGATGACATGGCTGCATTCTTAGCCACGTTGGGATATCCAGGCATATCTGCTCCTCCTGCACCTTCAACTCTTGATGAAGCGACTACCTTCACCCAGTCACAAAGCAAACTCCGCCGCTCTTCGCACCCTGCTTTCACTTATCTCACCGCCTCATCTCTCCTCTCAAACTCACTTCACCACAACCAATCATCTCCGCCCCACATCGAAACCCAAACCCCACATTCCAATGCTACTTACGGCTATCTTCTCAATCGGTTCAAGGACTCCGGTACCTCAAACGAAGCCGAAAGCTTTCATTTGCGGATTTTCAAACACGGGTTCACTCAAGATTTGTTCTTGTGCAATACCCTTATCAACGTCTATGTCAAAATCGGTGCTTTGGCTAATGCACGTAAGCTGTTCGACGAAATGCCTGAGAAGAACTCAGTTACTTGGGCTTGCTTGATTTCGGGGCATGCCCGGAGCGGTGTGCCAGAGGAGGCGTGTGGGCAGTTTAGACGGATGGTCTGTGATGGTTTCGTGCCGAGTGTTTATGCTTTTGGGAGTGTTCTAAGGGCTTGCCAGGAGTTGGGTTCTTGCAAGCTTAAGTTTGGGATGCAAATTCATGGCTTGTTATCGAAAATGCATGATTCGGATGTGTTGTTAGCTAATGTGCTGATGTCAATGTATGGGAGATGTTTGGGTTCTGCCGATGATGCTTACCGGGCGTTTTGTGAGATCAAGTTTAGAAATTTAGTGTCTTGGAATTCGATTATTTCGGTTTACTGCCAAAGAGGGGATGCAGTGTTTGCTTATAAGCTTTTCTCAAACATGCAGAAGGATGGTGTGGATTTTGATTTGCAACCGAATGAATATACTTTCGGTAGCTTGGTACCTGCCTGTTGTTCTTTGGCTGATTCTGGTTTGGTTTTGCTTCAGCAAATTCTGAGCAGGGTCAGCAAAGCTGGATTTTTACAGGATTTGTACGTAGGAAGTGCTTTGGTTAGTGGATTTGCTAGGGTTGGATTAGTTGATTACACTAGGAAGATTTTTGAGCAGATGGGTGAGAGGAATGTAGTTTCGATGAATGGGTTGATGGTTGGATTGGTGAGGCAGAAGCGAGGAGAAGAAGCCACTCAAGTTTTCATGGAGATGAAGGACTTAGTTGGAATAAATGTTGATTCGCGTGTGGTTCTTTTAAGTTCTTTCGCTGAATTTTCTGTTTTAGAGGAAGGGAAAAGAAAGGGAAGAGAAGTTCACGCATATGTAATTGCAACTGGCTTGATTCATAGCAAGGTTGCAATGGAGAATGGGCTTGTAAATATGTATGCTAAATGTGGTGCTGTAGACGATGCTTGTTCAGTTTTCAGGCTCATGGTAGACAAAGACTTAATCTCATGGAACTCTCTGATCTCTGGTCTCGACCACAACGAGTGTTTTGAAGATGCAGTCATGAAGTTCCGTGAAATGAGAAGATCTGAGTTGACACCTTCAATTTTCCCATTAATTAGTGCTTTGAGTTCATGTGCAAGCTTGGAGTGGATCATGATGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

749

Amino Acids

83.84

Weight (kDa)

5.7

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	377 - 424	7.6e-07	PPR repeat family
PPR_2	PF13041	481 - 532	2.4e-11	PPR repeat family
PPR	PF01535	483 - 513	1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09950 AT5G09950 AT5G09950
fragaria_vesca	FvH4_6g40670
malus_domestica	MD09G1126300.v1.1
prunus_persica	Prupe.3G198300_v2.0.a1
pyrus_communis	pycom09g05060
rosa_chinensis	RchiOBHm_Chr2g0156061 RchiOBHm_Chr2g0156111
rosa_laevigata	RLG00000020884 RLG00000020888
rosa_multiflora	Rmu_sc0000260.1_g000021 Rmu_sc0011922.1_g000009
rosa_roxburghii	Rroxscaffold_2G00093230
rosa_rugosa	Rorug02G0451500
rosa_samantha	Rh2AG518400 Rh2BG529500 Rh2CG503100 Rh2DG538700
rosa_wichuraiana	Rw2G042680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1506
Acc36I	ACCTGC	1 cut(s)	1594
Acc65I	GGTACC	2 cut(s)	980, 1582
AccB1I	GGYRCC	2 cut(s)	980, 1582
AccB7I	CCANNNNNTGG	1 cut(s)	1279
AccBSI	CCGCTC	3 cut(s)	110, 828, 1176
AccI	GTMKAC	3 cut(s)	81, 2037, 2070
AccII	CGCG	1 cut(s)	1876
AciI	CCGC	9 cut(s)	110, 445, 605, 823, 826, 858, 905, 1012, 1176
AclWI	GGATC	1 cut(s)	2240
AcsI	RAATTY	5 cut(s)	1311, 1441, 1456, 1632, 1904
AcuI	CTGAAG	1 cut(s)	1610
AfaI	GTAC	5 cut(s)	242, 346, 982, 1584, 1676
AfeI	AGCGCT	1 cut(s)	287
AfiI	CCNNNNNNNGG	2 cut(s)	1279, 1486
AflII	CTTAAG	1 cut(s)	1295
AhdI	GACNNNNNGTC	3 cut(s)	172, 222, 1214
AjnI	CCWGG	3 cut(s)	369, 748, 1272
AloI	GAACNNNNNNTCC	2 cut(s)	1929, 1961
AluBI	AGCT	9 cut(s)	96, 1002, 1108, 1294, 1358, 1510, 1578, 1655, 2223
AluI	AGCT	9 cut(s)	96, 1002, 1108, 1294, 1358, 1510, 1578, 1655, 2223
Alw26I	GTCTC	4 cut(s)	43, 467, 625, 2114
AlwI	GGATC	1 cut(s)	2240
Ama87I	CYCGRG	2 cut(s)	86, 327
Aor51HI	AGCGCT	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	496, 722
ApoI	RAATTY	5 cut(s)	1311, 1441, 1456, 1632, 1904
AseI	ATTAAT	1 cut(s)	2195
Asp700I	GAANNNNTTC	1 cut(s)	1002
Asp718I	GGTACC	2 cut(s)	980, 1582
AspLEI	GCGC	1 cut(s)	288
AsuC2I	CCSGG	3 cut(s)	410, 1171, 1415
AsuHPI	GGTGA	7 cut(s)	125, 451, 793, 847, 878, 1766, 1810
AvaI	CYCGRG	2 cut(s)	86, 327
BaeI	ACNNNNGTAYC	2 cut(s)	964, 997
BanI	GGYRCC	2 cut(s)	980, 1582
BbsI	GAAGAC	1 cut(s)	603
BbvI	GCAGC	2 cut(s)	508, 709
BccI	CCATC	7 cut(s)	82, 1207, 1217, 1526, 1744, 1780, 2233
BceAI	ACGGC	1 cut(s)	964
BciT130I	CCWGG	3 cut(s)	371, 750, 1274
BciVI	GTATCC	2 cut(s)	377, 601
BcnI	CCSGG	3 cut(s)	410, 1171, 1415
BcoDI	GTCTC	4 cut(s)	43, 467, 625, 2114
BfaI	CTAG	3 cut(s)	665, 1707, 1731
BfmI	CTRYAG	1 cut(s)	2034
BfoI	RGCGCY	1 cut(s)	289
BfrI	CTTAAG	1 cut(s)	1295
BfuAI	ACCTGC	1 cut(s)	1594
BfuI	GTATCC	2 cut(s)	377, 601
BglII	AGATCT	1 cut(s)	2165
BisI	GCNGC	3 cut(s)	497, 723, 826
BlsI	GCNGC	3 cut(s)	498, 724, 827
BmcAI	AGTACT	1 cut(s)	242
Bme1390I	CCNGG	6 cut(s)	371, 410, 750, 1171, 1274, 1415
BmeRI	GACNNNNNGTC	3 cut(s)	172, 222, 1214
BmeT110I	CYCGRG	2 cut(s)	86, 327
BmiI	GGNNCC	2 cut(s)	982, 1584
BmrFI	CCNGG	6 cut(s)	371, 410, 750, 1171, 1274, 1415
BmrI	ACTGGG	1 cut(s)	799
BmsI	GCATC	7 cut(s)	278, 633, 1296, 1396, 1480, 2032, 2125
BmuI	ACTGGG	1 cut(s)	799
BpiI	GAAGAC	1 cut(s)	603
BplI	GAGNNNNNCTC	2 cut(s)	1118, 1150
BpmI	CTGGAG	1 cut(s)	442
BpuEI	CTTGAG	3 cut(s)	248, 1020, 1812
BpuMI	CCSGG	3 cut(s)	410, 1171, 1415
BsaAI	YACGTR	2 cut(s)	1103, 1678
BsaI	GGTCTC	1 cut(s)	2114
BsaWI	WCCGGW	1 cut(s)	977
Bsc4I	CCNNNNNNNGG	2 cut(s)	1279, 1486
Bse118I	RCCGGY	1 cut(s)	499
Bse1I	ACTGG	2 cut(s)	805, 1972
Bse3DI	GCAATG	1 cut(s)	1998
BseBI	CCWGG	3 cut(s)	371, 750, 1274
BseGI	GGATG	6 cut(s)	611, 1218, 1311, 1351, 1495, 1537
BseLI	CCNNNNNNNGG	2 cut(s)	1279, 1486
BseMI	GCAATG	1 cut(s)	1998
BseMII	CTCAG	4 cut(s)	1116, 1149, 1628, 2160
BseNI	ACTGG	2 cut(s)	805, 1972
BseRI	GAGGAG	7 cut(s)	533, 542, 597, 753, 860, 1202, 1827
BseXI	GCAGC	2 cut(s)	508, 709
BsgI	GTGCAG	1 cut(s)	753
Bsh1236I	CGCG	1 cut(s)	1876
BshNI	GGYRCC	2 cut(s)	980, 1582
BsiHKCI	CYCGRG	2 cut(s)	86, 327
BsiSI	CCGG	5 cut(s)	409, 500, 978, 1171, 1414
BslFI	GGGAC	3 cut(s)	38, 425, 714
BslI	CCNNNNNNNGG	2 cut(s)	1279, 1486
BsmAI	GTCTC	4 cut(s)	43, 467, 625, 2114
BsmFI	GGGAC	3 cut(s)	38, 425, 714
BsmI	GAATGC	1 cut(s)	725
Bso31I	GGTCTC	1 cut(s)	2114
BsoBI	CYCGRG	2 cut(s)	86, 327
Bsp143I	GATC	5 cut(s)	124, 1428, 2100, 2165, 2232
BspACI	CCGC	9 cut(s)	110, 445, 605, 823, 826, 858, 905, 1012, 1176
BspCNI	CTCAG	4 cut(s)	1117, 1148, 1629, 2161
BspFNI	CGCG	1 cut(s)	1876
BspHI	TCATGA	3 cut(s)	679, 2142, 2235
BspLI	GGNNCC	2 cut(s)	982, 1584
BspMI	ACCTGC	1 cut(s)	1594
BspPI	GGATC	1 cut(s)	2240
BspQI	GCTCTTC	1 cut(s)	835
BspT107I	GGYRCC	2 cut(s)	980, 1582
BspTI	CTTAAG	1 cut(s)	1295
BspTNI	GGTCTC	1 cut(s)	2114
BsrBI	CCGCTC	3 cut(s)	110, 828, 1176
BsrDI	GCAATG	1 cut(s)	1998
BsrFI	RCCGGY	1 cut(s)	499
BsrI	ACTGG	2 cut(s)	805, 1972
BssAI	RCCGGY	1 cut(s)	499
BssMI	GATC	5 cut(s)	124, 1428, 2100, 2165, 2232
Bst2UI	CCWGG	3 cut(s)	371, 750, 1274
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	2 cut(s)	835, 1933
BstAFI	CTTAAG	1 cut(s)	1295
BstAPI	GCANNNNNTGC	1 cut(s)	1499
BstBAI	YACGTR	2 cut(s)	1103, 1678
BstC8I	GCNNGC	7 cut(s)	305, 501, 1150, 1167, 1270, 1292, 2221
BstDEI	CTNAG	7 cut(s)	730, 1125, 1135, 1262, 1637, 1852, 2169
BstF5I	GGATG	6 cut(s)	611, 1218, 1311, 1351, 1495, 1537
BstFNI	CGCG	1 cut(s)	1876
BstH2I	RGCGCY	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	5 cut(s)	127, 1431, 2103, 2168, 2235
BstMAI	GTCTC	4 cut(s)	43, 467, 625, 2114
BstMBI	GATC	5 cut(s)	124, 1428, 2100, 2165, 2232
BstMWI	GCNNNNNNNGC	9 cut(s)	116, 652, 731, 767, 822, 1406, 1415, 1499, 1647
BstNI	CCWGG	3 cut(s)	371, 750, 1274
BstNSI	RCATGY	2 cut(s)	1169, 1525
BstSCI	CCNGG	6 cut(s)	369, 408, 748, 1169, 1272, 1413
BstSFI	CTRYAG	1 cut(s)	2034
BstSNI	TACGTA	1 cut(s)	1678
BstUI	CGCG	1 cut(s)	1876
BstV1I	GCAGC	2 cut(s)	508, 709
BstV2I	GAAGAC	1 cut(s)	603
BstX2I	RGATCY	1 cut(s)	2165
BstYI	RGATCY	1 cut(s)	2165
BsuI	GTATCC	2 cut(s)	377, 601
BtsCI	GGATG	6 cut(s)	611, 1218, 1311, 1351, 1495, 1537
BtsI	GCAGTG	1 cut(s)	1500
BtsIMutI	CAGTG	2 cut(s)	465, 1500
BveI	ACCTGC	1 cut(s)	1594
Cac8I	GCNNGC	7 cut(s)	305, 501, 1150, 1167, 1270, 1292, 2221
CciI	TCATGA	3 cut(s)	679, 2142, 2235
CfoI	GCGC	1 cut(s)	288
Cfr10I	RCCGGY	1 cut(s)	499
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	5 cut(s)	241, 345, 981, 1583, 1675
CspCI	CAANNNNNGTGG	2 cut(s)	604, 639
CviQI	GTAC	5 cut(s)	241, 345, 981, 1583, 1675
DdeI	CTNAG	7 cut(s)	730, 1125, 1135, 1262, 1637, 1852, 2169
DpnI	GATC	5 cut(s)	126, 1430, 2102, 2167, 2234
DpnII	GATC	5 cut(s)	124, 1428, 2100, 2165, 2232
DriI	GACNNNNNGTC	3 cut(s)	172, 222, 1214
Eam1104I	CTCTTC	2 cut(s)	835, 1933
Eam1105I	GACNNNNNGTC	3 cut(s)	172, 222, 1214
EarI	CTCTTC	2 cut(s)	835, 1933
EciI	GGCGGA	2 cut(s)	812, 894
Eco105I	TACGTA	1 cut(s)	1678
Eco31I	GGTCTC	1 cut(s)	2114
Eco32I	GATATC	1 cut(s)	746
Eco47III	AGCGCT	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	1610
Eco88I	CYCGRG	2 cut(s)	86, 327
EcoRI	GAATTC	1 cut(s)	1456
EcoRII	CCWGG	3 cut(s)	369, 748, 1272
EcoRV	GATATC	1 cut(s)	746
EcoT22I	ATGCAT	1 cut(s)	1338
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FaqI	GGGAC	3 cut(s)	38, 425, 714
FauI	CCCGC	1 cut(s)	103
FauNDI	CATATG	1 cut(s)	1954
FblI	GTMKAC	3 cut(s)	81, 2037, 2070
Fnu4HI	GCNGC	3 cut(s)	497, 723, 826
FokI	GGATG	6 cut(s)	598, 1225, 1318, 1358, 1502, 1544
Fsp4HI	GCNGC	3 cut(s)	497, 723, 826
FspBI	CTAG	3 cut(s)	665, 1707, 1731
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	3 cut(s)	497, 723, 826
GsuI	CTGGAG	1 cut(s)	442
HaeII	RGCGCY	1 cut(s)	289
HapII	CCGG	5 cut(s)	409, 500, 978, 1171, 1414
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	288
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HincII	GTYRAC	1 cut(s)	2175
HindII	GTYRAC	1 cut(s)	2175
HindIII	AAGCTT	4 cut(s)	1000, 1292, 1508, 2221
HinfI	GANTC	8 cut(s)	530, 633, 676, 974, 1340, 1607, 1871, 1975
HpaII	CCGG	5 cut(s)	409, 500, 978, 1171, 1414
HphI	GGTGA	7 cut(s)	125, 451, 793, 847, 878, 1766, 1810
Hpy166II	GTNNAC	7 cut(s)	82, 1032, 1474, 1948, 2038, 2071, 2175
Hpy188I	TCNGA	6 cut(s)	652, 671, 1345, 1638, 2100, 2170
Hpy188III	TCNNGA	8 cut(s)	227, 421, 680, 782, 1037, 2111, 2143, 2236
Hpy8I	GTNNAC	7 cut(s)	82, 1032, 1474, 1948, 2038, 2071, 2175
Hpy99I	CGWCG	1 cut(s)	1118
HpyAV	CCTTC	7 cut(s)	140, 783, 808, 1522, 1840, 1916, 2190
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	6 cut(s)	173, 600, 737, 1068, 1102, 1677
HpyF10VI	GCNNNNNNNGC	9 cut(s)	116, 652, 731, 767, 822, 1406, 1415, 1499, 1647
HpyF3I	CTNAG	7 cut(s)	730, 1125, 1135, 1262, 1637, 1852, 2169
HpySE526I	ACGT	6 cut(s)	173, 600, 737, 1068, 1102, 1677
HspAI	GCGC	1 cut(s)	286
KpnI	GGTACC	2 cut(s)	984, 1586
KroI	GCCGGC	1 cut(s)	499
KroNI	GCCGGC	1 cut(s)	501
Kzo9I	GATC	5 cut(s)	124, 1428, 2100, 2165, 2232
LguI	GCTCTTC	1 cut(s)	835
LmnI	GCTCC	2 cut(s)	766, 1173
Lsp1109I	GCAGC	2 cut(s)	508, 709
LweI	GCATC	7 cut(s)	278, 633, 1296, 1396, 1480, 2032, 2125
MaeI	CTAG	3 cut(s)	665, 1707, 1731
MaeII	ACGT	6 cut(s)	173, 600, 737, 1068, 1102, 1677
MaeIII	GTNAC	2 cut(s)	807, 1138
MalI	GATC	5 cut(s)	126, 1430, 2102, 2167, 2234
MbiI	CCGCTC	3 cut(s)	110, 828, 1176
MboI	GATC	5 cut(s)	124, 1428, 2100, 2165, 2232
MflI	RGATCY	1 cut(s)	2165
MlyI	GAGTC	3 cut(s)	539, 627, 968
MmeI	TCCRAC	4 cut(s)	694, 1693, 1771, 1837
Mph1103I	ATGCAT	1 cut(s)	1338
MroNI	GCCGGC	1 cut(s)	499
MroXI	GAANNNNTTC	1 cut(s)	1002
MseI	TTAA	7 cut(s)	213, 392, 479, 1296, 1889, 2081, 2195
MslI	CAYNNNNRTG	4 cut(s)	684, 936, 1841, 1953
MspCI	CTTAAG	1 cut(s)	1295
MspI	CCGG	5 cut(s)	409, 500, 978, 1171, 1414
MspR9I	CCNGG	6 cut(s)	371, 410, 750, 1171, 1274, 1415
Mva1269I	GAATGC	1 cut(s)	725
MvaI	CCWGG	3 cut(s)	371, 750, 1274
MvnI	CGCG	1 cut(s)	1876
MwoI	GCNNNNNNNGC	9 cut(s)	116, 652, 731, 767, 822, 1406, 1415, 1499, 1647
NaeI	GCCGGC	1 cut(s)	501
NciI	CCSGG	3 cut(s)	410, 1171, 1415
NdeI	CATATG	1 cut(s)	1954
NdeII	GATC	5 cut(s)	124, 1428, 2100, 2165, 2232
NgoMIV	GCCGGC	1 cut(s)	499
NlaIV	GGNNCC	2 cut(s)	982, 1584
NmeAIII	GCCGAG	1 cut(s)	1260
NmuCI	GTSAC	1 cut(s)	807
NsiI	ATGCAT	1 cut(s)	1338
NspI	RCATGY	2 cut(s)	1169, 1525
PaeI	GCATGC	1 cut(s)	1169
PagI	TCATGA	3 cut(s)	679, 2142, 2235
PciSI	GCTCTTC	1 cut(s)	835
PcsI	WCGNNNNNNNCGW	2 cut(s)	200, 2118
PctI	GAATGC	1 cut(s)	725
PdiI	GCCGGC	1 cut(s)	501
PdmI	GAANNNNTTC	1 cut(s)	1002
PfeI	GAWTC	5 cut(s)	676, 1340, 1607, 1871, 1975
PflMI	CCANNNNNTGG	1 cut(s)	1279
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	3 cut(s)	498, 724, 827
PleI	GAGTC	3 cut(s)	538, 627, 968
PpsI	GAGTC	3 cut(s)	538, 627, 968
Ppu21I	YACGTR	2 cut(s)	1103, 1678
PshBI	ATTAAT	1 cut(s)	2195
PsiI	TTATAA	1 cut(s)	1506
Psp6I	CCWGG	3 cut(s)	369, 748, 1272
PspGI	CCWGG	3 cut(s)	369, 748, 1272
PspN4I	GGNNCC	2 cut(s)	982, 1584
PsuI	RGATCY	1 cut(s)	2165
RsaI	GTAC	5 cut(s)	242, 346, 982, 1584, 1676
RsaNI	GTAC	5 cut(s)	241, 345, 981, 1583, 1675
RseI	CAYNNNNRTG	4 cut(s)	684, 936, 1841, 1953
SapI	GCTCTTC	1 cut(s)	835
SaqAI	TTAA	7 cut(s)	213, 392, 479, 1296, 1889, 2081, 2195
SatI	GCNGC	3 cut(s)	497, 723, 826
Sau3AI	GATC	5 cut(s)	124, 1428, 2100, 2165, 2232
ScaI	AGTACT	1 cut(s)	242
SchI	GAGTC	3 cut(s)	539, 627, 968
ScrFI	CCNGG	6 cut(s)	371, 410, 750, 1171, 1274, 1415
SfaNI	GCATC	7 cut(s)	278, 633, 1296, 1396, 1480, 2032, 2125
SfcI	CTRYAG	1 cut(s)	2034
SmiMI	CAYNNNNRTG	4 cut(s)	684, 936, 1841, 1953
SmlI	CTYRAG	4 cut(s)	227, 1035, 1295, 1827
SmoI	CTYRAG	4 cut(s)	227, 1035, 1295, 1827
SnaBI	TACGTA	1 cut(s)	1678
SphI	GCATGC	1 cut(s)	1169
SsiI	CCGC	9 cut(s)	110, 445, 605, 823, 826, 858, 905, 1012, 1176
SspMI	CTAG	3 cut(s)	665, 1707, 1731
StyD4I	CCNGG	6 cut(s)	369, 408, 748, 1169, 1272, 1413
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	6 cut(s)	176, 603, 740, 1071, 1105, 1680
TaqII	GACCGA	2 cut(s)	179, 233
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	1 cut(s)	828
TfiI	GAWTC	5 cut(s)	676, 1340, 1607, 1871, 1975
Tru1I	TTAA	7 cut(s)	213, 392, 479, 1296, 1889, 2081, 2195
Tru9I	TTAA	7 cut(s)	213, 392, 479, 1296, 1889, 2081, 2195
TscAI	CASTG	2 cut(s)	472, 1500
TseFI	GTSAC	1 cut(s)	807
TseI	GCWGC	2 cut(s)	496, 722
Tsp45I	GTSAC	1 cut(s)	807
TspGWI	ACGGA	2 cut(s)	1225, 2141
TspRI	CASTG	2 cut(s)	472, 1500
Van91I	CCANNNNNTGG	1 cut(s)	1279
Vha464I	CTTAAG	1 cut(s)	1295
VspI	ATTAAT	1 cut(s)	2195
XapI	RAATTY	5 cut(s)	1311, 1441, 1456, 1632, 1904
XceI	RCATGY	2 cut(s)	1169, 1525
XmiI	GTMKAC	3 cut(s)	81, 2037, 2070
XmnI	GAANNNNTTC	1 cut(s)	1002
XspI	CTAG	3 cut(s)	665, 1707, 1731
ZrmI	AGTACT	1 cut(s)	242
Zsp2I	ATGCAT	1 cut(s)	1338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.