Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011231

Physical Location & Seq

Genomic Coordinates Forward (+)

74495850 .. 74498990

Gene Structure 3141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG518400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3141 bp

ATGTTCCGCTCTTTCTTCATTGCAGGACTACCTTCTCCCACTCACAAAGCAAAACTGCGCCGCTCTTCACACCCTGCTTTCACTTCTCTCACCGCCTCACCTCTCCTCTCAAACCAATCATCTCCGCCCCACATCGAAACCCAAACCCCACATTCCAATGCAACTTACGGCTTTCTCCTCAATCGGTTCAAGGACTCCCGTACCTCAAACGAAGCGGAAAGCTTTCATTTGCGGATTTTCAAACATGGCTTCACTCAAGATTTGTTCTTGTGCAATACACTTATCAACGTATATGTCAAAATCGGTGCTTTGGTTAATGCACGTAACCTGTTCGACGAAATGCCTGAGAAGAACTCGGTTACTTGGGCTTGCTTGATTTCGGGGTACGCCCGGAGCGGTATGCCGGAGGAGGCGTGTCGGCAGTTTAAACGGATGGTCTGTGATGGTTTCGTGCCGAGTGTTTATGCTTTTGGGAGTGTTTTAAGGGCTTGCCAGGAGTTGGGTCCTTGCAAGCTTAAGTTTGGGATGCAAATTCATGGCTTGTTATCGAAAATGCATGATTCGGATGTGTTGTTAGCTAATGTGCTGATGTCAATGTATGGGAGATGTTTGGGTTCTGCGGATGATGCTTACCGGGCTTTTTGTGAGATCAGGTTTAGAAATTTAGTGTCTTGGAATTCAATTATTTCGGTTTACTGCCAAAGAGGGGATGCAGTCTCTGCTTATAAGCTTTTCTCAAACATGCAGAAGGATGGTGTGGATTTTGATTTGCAACCGAATGAGTATACTTTCGGTAGCTTGGTACCTGCCTGTTGTGCTTTGGCTGATTCTGGTTTGGTTTTGCTTCAGCAAATGCTGAGCAGGGTCAGCAAAGCTGGATTTTTACAGGATTTGTACGTAGGAAGTGCTTTGGTTAGTGGATTTGCGAGGGTTGGATTAGTCGATTACGCTAGGAAGATTTTTGAGCAGATGGGTGAGAGGAATGTAGTTTCGATGAATGGGTTGATGGTTGGACTGGTGAGGCAGAAGCGAGGAGAGGAAGCCACTCAAGTTTTCATGGAGATGAAGGACTTGGTTGGAATAAATATTGATTCGCTTGTGGTTCTTTTAAGTTCATTCACTGAATTTTCTGCTTTAGAGGAAGGGAAAAGAAAGGGAAGAGAAGTTCATGCATATGTAATTGCAACTGGCTTGATTCACAGCAAGGTTGCAATAGAGAATGGGCTTGTAAATATGTATGCCAAATGTGGTGCTATTGATGATGCTTGTTCAGTTTTTAGGCTCATGGTAGACAAAGACTTAATCTCATGGAACTCTCTGATCTCTGGTCTCGACCAGAACGAGTGTTTTGAAGATGCAGTCATGAAGTTCTCTGAAATGAGAAAATCTGAGTTGACACCTTCAATTTTCACATTAATTAGTGCTTTGAGTTCATGTGCAAGCTTGGAGTGGATCATGATGGGACAGCAAATACATTGTGAAGCACTTAAATTGGGACTTGATTTGGATGTTTCAGTTTCAAATGCTCTTCTTGCATTGTATTCCGACACAGGGTGCCTTAGTGAATCCCGGAATGTTTTTTTCTTGATGCAGGAGTATGACCAAGTGTCGTGGAATTCCATAGTTGGGGCTTTGGCTAGTTCAGAGGCTTCAGTTTTTGAAGCTGTAGGATATTTATTGGAAATGATGCGATCTGGATGGGAACTTAATAGAGTAACATTTATTAGCATTCTTTCAGCAGTTTCATCTCTCTCACTTCACGAGCTAGGCCAGCAGATTCATGCTGTAGTCTTAAAATACAATGCGGCAAAGGACTGTGCTATTGAGAATGCGCTTATTGCTTGCTATGGAAAGTGTGGACAGATAGAGGACTGCGAGAAGATATTTTCTAGAATGCCTGAAAGAAGGGATGAAGTAAGTTGGAATTCCATGATTTCTGGATACATACATAATGAGCTCTTGCCCAAGGCCATGGATTTGGTCTGGTTTATGATGCAGAGGGGTCAGAGATTAGACTCTTTTACTTTTGCTACTGTTCTGAGTGCTTGTGCTTCAGTTGCAACGTTAGAGCGTGGGATGGAAGTTCATGCTTCTGCTATAAGAGCTTGTTTGAAATCTGATGTCGTAGTTGGGAGTGCACTTGTCGACATGTATTCAAAGTGTGGAAGGATTGATTATGCTTCAAGATTCTTCGAGTTGATGCCAGTAAGGAATGTGTATTCTTGGAATTCATTAATATCAGGATATGCTCGCAATGGAGATGGACAGAAAGCTCTGAGGCTTTTCACACAAATGAAGCAACAAGATCAGCCACCAGATCATGTTACCTTTGTTGGGGTCCTATCAGCTTGTAGCCATGCAGGGCTCGTGGATGAAGGGTTTCAGCATTTCAATTCCATGAGTAAAGTACATGGACTAGCTCCTAGGATGGAGCACTTTTCATGTATGGTTGATCTTCTTGGAAGGACAGGAAAAATTAACATGATAGAGGACTTCATCAAAAAAATGCCGATGAAGCCTAATGTGCTTATTTGGAGGACAGTTTTAGGGGCTTGTTGCCGAGACAATGGTCGTAACACAGAGCTAGGCAGGATGGCTGGTGAAATGCTTTTGGAGTTGGAACCCCAAAATGCTGTGAACTATGTGCTTCTTGCTAACATGTATGCTTCTGGTGGGAAGTGGGATGGCGTGGCAAAGGCTAGGATGACAATGAGAAAGGCAGCAGTGAAGAAGGAAGCTGGGTGCAGTTGGGTCACTATGAAAGATGGAGTTCATGTTTTTGTAGCTGGGGACAAATTACACCCAGAGAAAGATTTGATATATGAAAAACTGAAGGAACTTACCAAGAAAATGAGGGATGCTGGATATGTGCCTGAAACAAAATTTGCACTATACGATCTCGAACTGGAGAACAAGGAAGAACTCCTGAGTTATCACAGTGAAAAGCTTGCTGTTGCATATGTTCTTACTCGCCAGTCACAGTTGCCTATAAGGATTATGAAAAACCTTCGGGTTTGTGGTGACTGCCACACTGCCTTCAAATACATATCAAATATTGTTGGCAGGCAAATAGTATTACGCGATTCAAACAGATTTCATCACTTTCAAGATGGCAAGTGTTCTTGTGGGGATTTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

1046

Amino Acids

116.91

Weight (kDa)

7.46

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	117 - 164	6.6e-09	PPR repeat family
PPR	PF01535	120 - 150	1.2e-06	PPR repeat
PPR_2	PF13041	221 - 272	4.2e-12	PPR repeat family
PPR	PF01535	223 - 253	6e-07	PPR repeat
PPR_2	PF13041	433 - 480	8.9e-06	PPR repeat family
PPR_2	PF13041	637 - 684	2.8e-08	PPR repeat family
PPR_2	PF13041	737 - 785	1.2e-12	PPR repeat family
PPR_1	PF12854	737 - 766	8.1e-06	PPR repeat
PPR	PF01535	740 - 767	5.5e-08	PPR repeat
E_motif	PF20431	859 - 918	3.1e-18	E motif
Eplus_motif	PF20430	924 - 951	3.7e-07	E+ motif
DYW_deaminase	PF14432	955 - 1046	6.4e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09950 AT5G09950 AT5G09950
fragaria_vesca	FvH4_6g40670
malus_domestica	MD09G1126300.v1.1
prunus_persica	Prupe.3G198300_v2.0.a1
pyrus_communis	pycom09g05060
rosa_chinensis	RchiOBHm_Chr2g0156061 RchiOBHm_Chr2g0156111
rosa_laevigata	RLG00000020884 RLG00000020888
rosa_multiflora	Rmu_sc0000260.1_g000021 Rmu_sc0011922.1_g000009
rosa_roxburghii	Rroxscaffold_2G00093230
rosa_rugosa	Rorug02G0451500
rosa_samantha	Rh2AG518400 Rh2BG529500 Rh2CG503100 Rh2DG538700
rosa_wichuraiana	Rw2G042680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	726
Acc36I	ACCTGC	1 cut(s)	814
Acc65I	GGTACC	1 cut(s)	802
AccB1I	GGYRCC	2 cut(s)	802, 1554
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccBSI	CCGCTC	3 cut(s)	9, 63, 396
AccI	GTMKAC	3 cut(s)	785, 1290, 2145
AccII	CGCG	1 cut(s)	3081
AciI	CCGC	9 cut(s)	7, 61, 93, 125, 215, 232, 396, 620, 1805
AclI	AACGTT	1 cut(s)	2063
AclWI	GGATC	1 cut(s)	1460
AcsI	RAATTY	8 cut(s)	531, 661, 676, 1124, 1615, 1924, 2227, 2882
AcuI	CTGAAG	4 cut(s)	830, 1635, 2037, 2852
AdeI	CACNNNGTG	1 cut(s)	1554
AfaI	GTAC	5 cut(s)	202, 386, 804, 896, 2409
AfiI	CCNNNNNNNGG	5 cut(s)	499, 706, 1551, 1626, 2334
AflII	CTTAAG	1 cut(s)	515
AflIII	ACRYGT	2 cut(s)	2148, 2658
AhdI	GACNNNNNGTC	1 cut(s)	1606
AjnI	CCWGG	1 cut(s)	492
AloI	GAACNNNNNNTCC	2 cut(s)	1149, 1181
Alw21I	GWGCWC	3 cut(s)	1959, 2140, 2436
Alw26I	GTCTC	3 cut(s)	721, 1334, 2556
Alw44I	GTGCAC	1 cut(s)	2136
AlwI	GGATC	1 cut(s)	1460
AlwNI	CAGNNNCTG	1 cut(s)	719
AoxI	GGCC	2 cut(s)	1768, 1968
ApaLI	GTGCAC	1 cut(s)	2136
ApeKI	GCWGC	1 cut(s)	2720
ApoI	RAATTY	8 cut(s)	531, 661, 676, 1124, 1615, 1924, 2227, 2882
AseI	ATTAAT	2 cut(s)	1415, 2234
Asp700I	GAANNNNTTC	2 cut(s)	222, 2379
Asp718I	GGTACC	1 cut(s)	802
AspA2I	CCTAGG	1 cut(s)	2423
AspLEI	GCGC	2 cut(s)	60, 1834
AspS9I	GGNCC	2 cut(s)	503, 2338
AsuC2I	CCSGG	3 cut(s)	391, 635, 1570
AsuHPI	GGTGA	6 cut(s)	82, 90, 986, 1030, 2612, 3032
AvaII	GGWCC	2 cut(s)	503, 2338
AvrII	CCTAGG	1 cut(s)	2423
BaeGI	GKGCMC	1 cut(s)	2140
BaeI	ACNNNNGTAYC	2 cut(s)	184, 217
BanI	GGYRCC	2 cut(s)	802, 1554
BanII	GRGCYC	2 cut(s)	1959, 2367
BauI	CACGAG	2 cut(s)	1760, 2366
Bbv12I	GWGCWC	3 cut(s)	1959, 2140, 2436
BbvI	GCAGC	1 cut(s)	2732
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	494
BciVI	GTATCC	1 cut(s)	1934
BcnI	CCSGG	3 cut(s)	391, 635, 1570
BcoDI	GTCTC	3 cut(s)	721, 1334, 2556
BfaI	CTAG	8 cut(s)	951, 1638, 1766, 1890, 2417, 2424, 2585, 2700
BfmI	CTRYAG	2 cut(s)	1665, 1785
BfrI	CTTAAG	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	814
BfuI	GTATCC	1 cut(s)	1934
BisI	GCNGC	3 cut(s)	61, 1806, 2721
BlnI	CCTAGG	1 cut(s)	2423
BlpI	GCTNAGC	1 cut(s)	857
BlsI	GCNGC	3 cut(s)	62, 1807, 2722
Bme1390I	CCNGG	4 cut(s)	391, 494, 635, 1570
Bme18I	GGWCC	2 cut(s)	503, 2338
BmeRI	GACNNNNNGTC	1 cut(s)	1606
BmgT120I	GGNCC	2 cut(s)	503, 2338
BmiI	GGNNCC	5 cut(s)	504, 804, 1556, 2339, 2622
BmrFI	CCNGG	4 cut(s)	391, 494, 635, 1570
BoxI	GACNNNNGTC	1 cut(s)	2568
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BpmI	CTGGAG	1 cut(s)	2927
Bpu1102I	GCTNAGC	1 cut(s)	857
BpuEI	CTTGAG	2 cut(s)	240, 1032
BpuMI	CCSGG	3 cut(s)	391, 635, 1570
BsaAI	YACGTR	2 cut(s)	323, 898
BsaI	GGTCTC	1 cut(s)	1334
BsaJI	CCNNGG	3 cut(s)	1965, 1971, 2423
BsaXI	ACNNNNNCTCC	4 cut(s)	398, 428, 2760, 2790
Bsc4I	CCNNNNNNNGG	5 cut(s)	499, 706, 1551, 1626, 2334
Bse1I	ACTGG	5 cut(s)	1020, 1192, 2204, 2910, 2974
Bse3DI	GCAATG	2 cut(s)	18, 2260
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	3 cut(s)	1965, 1971, 2423
BseLI	CCNNNNNNNGG	5 cut(s)	499, 706, 1551, 1626, 2334
BseMI	GCAATG	2 cut(s)	18, 2260
BseMII	CTCAG	6 cut(s)	336, 848, 1380, 2030, 2267, 2918
BseNI	ACTGG	5 cut(s)	1020, 1192, 2204, 2910, 2974
BseRI	GAGGAG	4 cut(s)	95, 167, 422, 1047
BseSI	GKGCMC	1 cut(s)	2140
BseXI	GCAGC	1 cut(s)	2732
BseYI	CCCAGC	2 cut(s)	2738, 2786
BsgI	GTGCAG	1 cut(s)	2764
Bsh1236I	CGCG	1 cut(s)	3081
BshFI	GGCC	2 cut(s)	1770, 1970
BshNI	GGYRCC	2 cut(s)	802, 1554
BsiHKAI	GWGCWC	3 cut(s)	1959, 2140, 2436
BsiSI	CCGG	4 cut(s)	391, 404, 634, 1570
BslFI	GGGAC	3 cut(s)	1476, 1509, 2804
BslI	CCNNNNNNNGG	5 cut(s)	499, 706, 1551, 1626, 2334
BsmAI	GTCTC	3 cut(s)	721, 1334, 2556
BsmFI	GGGAC	3 cut(s)	1476, 1509, 2804
BsmI	GAATGC	3 cut(s)	1728, 1834, 1899
BsnI	GGCC	2 cut(s)	1770, 1970
Bso31I	GGTCTC	1 cut(s)	1334
Bsp1286I	GDGCHC	4 cut(s)	1959, 2140, 2367, 2436
Bsp143I	GATC	8 cut(s)	648, 1320, 1452, 1691, 2305, 2317, 2452, 2896
Bsp1720I	GCTNAGC	1 cut(s)	857
Bsp19I	CCATGG	1 cut(s)	1971
BspACI	CCGC	9 cut(s)	7, 61, 93, 125, 215, 232, 396, 620, 1805
BspANI	GGCC	2 cut(s)	1770, 1970
BspCNI	CTCAG	6 cut(s)	337, 849, 1381, 2031, 2268, 2919
BspFNI	CGCG	1 cut(s)	3081
BspHI	TCATGA	2 cut(s)	1362, 1455
BspLI	GGNNCC	5 cut(s)	504, 804, 1556, 2339, 2622
BspMI	ACCTGC	1 cut(s)	814
BspPI	GGATC	1 cut(s)	1460
BspQI	GCTCTTC	2 cut(s)	70, 1533
BspT107I	GGYRCC	2 cut(s)	802, 1554
BspTI	CTTAAG	1 cut(s)	515
BspTNI	GGTCTC	1 cut(s)	1334
BsrBI	CCGCTC	3 cut(s)	9, 63, 396
BsrDI	GCAATG	2 cut(s)	18, 2260
BsrI	ACTGG	5 cut(s)	1020, 1192, 2204, 2910, 2974
BssECI	CCNNGG	3 cut(s)	1965, 1971, 2423
BssMI	GATC	8 cut(s)	648, 1320, 1452, 1691, 2305, 2317, 2452, 2896
BssNAI	GTATAC	1 cut(s)	786
BssSI	CACGAG	2 cut(s)	1760, 2366
BssT1I	CCWWGG	3 cut(s)	1965, 1971, 2423
Bst1107I	GTATAC	1 cut(s)	786
Bst2BI	CACGAG	2 cut(s)	1760, 2366
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	5 cut(s)	1817, 2035, 2542, 2939, 2982
Bst6I	CTCTTC	3 cut(s)	70, 1153, 1533
BstAFI	CTTAAG	1 cut(s)	515
BstAPI	GCANNNNNTGC	1 cut(s)	719
BstBAI	YACGTR	2 cut(s)	323, 898
BstC8I	GCNNGC	9 cut(s)	370, 490, 512, 1441, 1772, 1843, 2251, 2949, 3065
BstDEI	CTNAG	7 cut(s)	345, 857, 1389, 1559, 2039, 2276, 2927
BstDSI	CCRYGG	1 cut(s)	1971
BstFNI	CGCG	1 cut(s)	3081
BstHHI	GCGC	2 cut(s)	60, 1834
BstKTI	GATC	8 cut(s)	651, 1323, 1455, 1694, 2308, 2320, 2455, 2899
BstMAI	GTCTC	3 cut(s)	721, 1334, 2556
BstMBI	GATC	8 cut(s)	648, 1320, 1452, 1691, 2305, 2317, 2452, 2896
BstNI	CCWGG	1 cut(s)	494
BstNSI	RCATGY	3 cut(s)	745, 2152, 2662
BstPAI	GACNNNNGTC	1 cut(s)	2568
BstSCI	CCNGG	4 cut(s)	389, 492, 633, 1568
BstSFI	CTRYAG	2 cut(s)	1665, 1785
BstSLI	GKGCMC	1 cut(s)	2140
BstSNI	TACGTA	1 cut(s)	898
BstUI	CGCG	1 cut(s)	3081
BstV1I	GCAGC	1 cut(s)	2732
BstXI	CCANNNNNNTGG	2 cut(s)	1972, 1978
BstZ17I	GTATAC	1 cut(s)	786
BsuI	GTATCC	1 cut(s)	1934
BsuRI	GGCC	2 cut(s)	1770, 1970
BtgI	CCRYGG	1 cut(s)	1971
BtsI	GCAGTG	2 cut(s)	2730, 3030
BtsIMutI	CAGTG	4 cut(s)	1119, 2730, 2944, 3030
BveI	ACCTGC	1 cut(s)	814
Cac8I	GCNNGC	9 cut(s)	370, 490, 512, 1441, 1772, 1843, 2251, 2949, 3065
CaiI	CAGNNNCTG	1 cut(s)	719
CciI	TCATGA	2 cut(s)	1362, 1455
CfoI	GCGC	2 cut(s)	60, 1834
Cfr13I	GGNCC	2 cut(s)	503, 2338
Csp6I	GTAC	5 cut(s)	201, 385, 803, 895, 2408
CspCI	CAANNNNNGTGG	2 cut(s)	1592, 1627
CviQI	GTAC	5 cut(s)	201, 385, 803, 895, 2408
DdeI	CTNAG	7 cut(s)	345, 857, 1389, 1559, 2039, 2276, 2927
DpnI	GATC	8 cut(s)	650, 1322, 1454, 1693, 2307, 2319, 2454, 2898
DpnII	GATC	8 cut(s)	648, 1320, 1452, 1691, 2305, 2317, 2452, 2896
DraI	TTTAAA	1 cut(s)	427
DraIII	CACNNNGTG	1 cut(s)	1554
DriI	GACNNNNNGTC	1 cut(s)	1606
Eam1104I	CTCTTC	3 cut(s)	70, 1153, 1533
Eam1105I	GACNNNNNGTC	1 cut(s)	1606
EarI	CTCTTC	3 cut(s)	70, 1153, 1533
EciI	GGCGGA	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	1957
Eco105I	TACGTA	1 cut(s)	898
Eco130I	CCWWGG	3 cut(s)	1965, 1971, 2423
Eco24I	GRGCYC	2 cut(s)	1959, 2367
Eco31I	GGTCTC	1 cut(s)	1334
Eco47I	GGWCC	2 cut(s)	503, 2338
Eco53kI	GAGCTC	1 cut(s)	1957
Eco57I	CTGAAG	4 cut(s)	830, 1635, 2037, 2852
EcoICRI	GAGCTC	1 cut(s)	1957
EcoO109I	RGGNCCY	2 cut(s)	503, 2338
EcoRI	GAATTC	4 cut(s)	676, 1615, 1924, 2227
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	3 cut(s)	1965, 1971, 2423
EcoT22I	ATGCAT	2 cut(s)	558, 1174
EcoT38I	GRGCYC	2 cut(s)	1959, 2367
ErhI	CCWWGG	3 cut(s)	1965, 1971, 2423
FaqI	GGGAC	3 cut(s)	1476, 1509, 2804
FauNDI	CATATG	2 cut(s)	1174, 2959
FblI	GTMKAC	3 cut(s)	785, 1290, 2145
Fnu4HI	GCNGC	3 cut(s)	61, 1806, 2721
FriOI	GRGCYC	2 cut(s)	1959, 2367
Fsp4HI	GCNGC	3 cut(s)	61, 1806, 2721
FspBI	CTAG	8 cut(s)	951, 1638, 1766, 1890, 2417, 2424, 2585, 2700
GlaI	GCGC	2 cut(s)	59, 1833
GluI	GCNGC	3 cut(s)	61, 1806, 2721
GsaI	CCCAGC	2 cut(s)	2742, 2790
GsuI	CTGGAG	1 cut(s)	2927
HaeIII	GGCC	2 cut(s)	1770, 1970
HapII	CCGG	4 cut(s)	391, 404, 634, 1570
HhaI	GCGC	2 cut(s)	60, 1834
Hin6I	GCGC	2 cut(s)	58, 1832
HinP1I	GCGC	2 cut(s)	58, 1832
HincII	GTYRAC	2 cut(s)	1395, 2146
HindII	GTYRAC	2 cut(s)	1395, 2146
HindIII	AAGCTT	5 cut(s)	220, 512, 728, 1441, 2945
HpaII	CCGG	4 cut(s)	391, 404, 634, 1570
HphI	GGTGA	6 cut(s)	82, 90, 986, 1030, 2612, 3032
Hpy166II	GTNNAC	8 cut(s)	694, 786, 1291, 1395, 1859, 2138, 2146, 2638
Hpy8I	GTNNAC	8 cut(s)	694, 786, 1291, 1395, 1859, 2138, 2146, 2638
Hpy99I	CGWCG	1 cut(s)	338
HpyCH4III	ACNGT	5 cut(s)	1817, 2035, 2542, 2939, 2982
HpyCH4IV	ACGT	4 cut(s)	288, 322, 897, 2063
HpyF3I	CTNAG	7 cut(s)	345, 857, 1389, 1559, 2039, 2276, 2927
HpySE526I	ACGT	4 cut(s)	288, 322, 897, 2063
HspAI	GCGC	2 cut(s)	58, 1832
KpnI	GGTACC	1 cut(s)	806
Kzo9I	GATC	8 cut(s)	648, 1320, 1452, 1691, 2305, 2317, 2452, 2896
LguI	GCTCTTC	2 cut(s)	70, 1533
LmnI	GCTCC	3 cut(s)	393, 2425, 2431
Lsp1109I	GCAGC	1 cut(s)	2732
MaeI	CTAG	8 cut(s)	951, 1638, 1766, 1890, 2417, 2424, 2585, 2700
MaeII	ACGT	4 cut(s)	288, 322, 897, 2063
MaeIII	GTNAC	8 cut(s)	323, 358, 1714, 2323, 2573, 2752, 2976, 3020
MalI	GATC	8 cut(s)	650, 1322, 1454, 1693, 2307, 2319, 2454, 2898
MbiI	CCGCTC	3 cut(s)	9, 63, 396
MboI	GATC	8 cut(s)	648, 1320, 1452, 1691, 2305, 2317, 2452, 2896
MhlI	GDGCHC	4 cut(s)	1959, 2140, 2367, 2436
MlyI	GAGTC	2 cut(s)	188, 2009
MmeI	TCCRAC	6 cut(s)	913, 991, 1057, 1569, 1901, 2598
Mph1103I	ATGCAT	2 cut(s)	558, 1174
MroXI	GAANNNNTTC	2 cut(s)	222, 2379
MslI	CAYNNNNRTG	4 cut(s)	156, 1061, 1173, 2291
MspCI	CTTAAG	1 cut(s)	515
MspI	CCGG	4 cut(s)	391, 404, 634, 1570
MspR9I	CCNGG	4 cut(s)	391, 494, 635, 1570
MssI	GTTTAAAC	1 cut(s)	427
Mva1269I	GAATGC	3 cut(s)	1728, 1834, 1899
MvaI	CCWGG	1 cut(s)	494
MvnI	CGCG	1 cut(s)	3081
NciI	CCSGG	3 cut(s)	391, 635, 1570
NcoI	CCATGG	1 cut(s)	1971
NdeI	CATATG	2 cut(s)	1174, 2959
NdeII	GATC	8 cut(s)	648, 1320, 1452, 1691, 2305, 2317, 2452, 2896
NlaIV	GGNNCC	5 cut(s)	504, 804, 1556, 2339, 2622
NmeAIII	GCCGAG	2 cut(s)	480, 2585
NmuCI	GTSAC	3 cut(s)	2752, 2976, 3020
NsiI	ATGCAT	2 cut(s)	558, 1174
NspI	RCATGY	3 cut(s)	745, 2152, 2662
PagI	TCATGA	2 cut(s)	1362, 1455
PciI	ACATGT	2 cut(s)	2148, 2658
PciSI	GCTCTTC	2 cut(s)	70, 1533
PcsI	WCGNNNNNNNCGW	1 cut(s)	1338
PctI	GAATGC	3 cut(s)	1728, 1834, 1899
PdmI	GAANNNNTTC	2 cut(s)	222, 2379
PfeI	GAWTC	8 cut(s)	560, 827, 1091, 1195, 1565, 1777, 2187, 3083
PflMI	CCANNNNNTGG	1 cut(s)	499
PfoI	TCCNGGA	1 cut(s)	1568
PkrI	GCNGC	3 cut(s)	62, 1807, 2722
PleI	GAGTC	2 cut(s)	188, 2009
PmeI	GTTTAAAC	1 cut(s)	427
PpsI	GAGTC	2 cut(s)	188, 2009
Ppu21I	YACGTR	2 cut(s)	323, 898
PpuMI	RGGWCCY	2 cut(s)	503, 2338
PscI	ACATGT	2 cut(s)	2148, 2658
PshAI	GACNNNNGTC	1 cut(s)	2568
PshBI	ATTAAT	2 cut(s)	1415, 2234
PsiI	TTATAA	1 cut(s)	726
Psp124BI	GAGCTC	1 cut(s)	1959
Psp1406I	AACGTT	1 cut(s)	2063
Psp5II	RGGWCCY	2 cut(s)	503, 2338
Psp6I	CCWGG	1 cut(s)	492
PspFI	CCCAGC	2 cut(s)	2738, 2786
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	5 cut(s)	504, 804, 1556, 2339, 2622
PspPI	GGNCC	2 cut(s)	503, 2338
PspPPI	RGGWCCY	2 cut(s)	503, 2338
PstNI	CAGNNNCTG	1 cut(s)	719
RsaI	GTAC	5 cut(s)	202, 386, 804, 896, 2409
RsaNI	GTAC	5 cut(s)	201, 385, 803, 895, 2408
RseI	CAYNNNNRTG	4 cut(s)	156, 1061, 1173, 2291
SacI	GAGCTC	1 cut(s)	1959
SalI	GTCGAC	1 cut(s)	2144
SapI	GCTCTTC	2 cut(s)	70, 1533
SatI	GCNGC	3 cut(s)	61, 1806, 2721
Sau3AI	GATC	8 cut(s)	648, 1320, 1452, 1691, 2305, 2317, 2452, 2896
Sau96I	GGNCC	2 cut(s)	503, 2338
SchI	GAGTC	2 cut(s)	188, 2009
ScrFI	CCNGG	4 cut(s)	391, 494, 635, 1570
SduI	GDGCHC	4 cut(s)	1959, 2140, 2367, 2436
SfcI	CTRYAG	2 cut(s)	1665, 1785
SinI	GGWCC	2 cut(s)	503, 2338
SmiMI	CAYNNNNRTG	4 cut(s)	156, 1061, 1173, 2291
SmlI	CTYRAG	3 cut(s)	255, 515, 1047
SmoI	CTYRAG	3 cut(s)	255, 515, 1047
SnaBI	TACGTA	1 cut(s)	898
SsiI	CCGC	9 cut(s)	7, 61, 93, 125, 215, 232, 396, 620, 1805
SspI	AATATT	2 cut(s)	1087, 3055
SspMI	CTAG	8 cut(s)	951, 1638, 1766, 1890, 2417, 2424, 2585, 2700
SstI	GAGCTC	1 cut(s)	1959
StyD4I	CCNGG	4 cut(s)	389, 492, 633, 1568
StyI	CCWWGG	3 cut(s)	1965, 1971, 2423
TaaI	ACNGT	5 cut(s)	1817, 2035, 2542, 2939, 2982
TaiI	ACGT	4 cut(s)	291, 325, 900, 2066
TaqI	TCGA	9 cut(s)	135, 333, 548, 942, 992, 1332, 2145, 2193, 2901
TatI	WGTACW	1 cut(s)	2407
TauI	GCSGC	2 cut(s)	63, 1808
TfiI	GAWTC	8 cut(s)	560, 827, 1091, 1195, 1565, 1777, 2187, 3083
TscAI	CASTG	4 cut(s)	1126, 2730, 2944, 3037
TseFI	GTSAC	3 cut(s)	2752, 2976, 3020
TseI	GCWGC	1 cut(s)	2720
Tsp45I	GTSAC	3 cut(s)	2752, 2976, 3020
TspGWI	ACGGA	1 cut(s)	445
TspRI	CASTG	4 cut(s)	1126, 2730, 2944, 3037
Van91I	CCANNNNNTGG	1 cut(s)	499
Vha464I	CTTAAG	1 cut(s)	515
VneI	GTGCAC	1 cut(s)	2136
VpaK11BI	GGWCC	2 cut(s)	503, 2338
VspI	ATTAAT	2 cut(s)	1415, 2234
XapI	RAATTY	8 cut(s)	531, 661, 676, 1124, 1615, 1924, 2227, 2882
XbaI	TCTAGA	1 cut(s)	1889
XceI	RCATGY	3 cut(s)	745, 2152, 2662
XmaJI	CCTAGG	1 cut(s)	2423
XmiI	GTMKAC	3 cut(s)	785, 1290, 2145
XmnI	GAANNNNTTC	2 cut(s)	222, 2379
XspI	CTAG	8 cut(s)	951, 1638, 1766, 1890, 2417, 2424, 2585, 2700
Zsp2I	ATGCAT	2 cut(s)	558, 1174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.