Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G09950 AT5G09950 AT5G09950 |
| fragaria_vesca | FvH4_6g40670 |
| malus_domestica | MD09G1126300.v1.1 |
| prunus_persica | Prupe.3G198300_v2.0.a1 |
| pyrus_communis | pycom09g05060 |
| rosa_chinensis | RchiOBHm_Chr2g0156061 RchiOBHm_Chr2g0156111 |
| rosa_laevigata | RLG00000020884 RLG00000020888 |
| rosa_multiflora | Rmu_sc0000260.1_g000021 Rmu_sc0011922.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00093230 |
| rosa_rugosa | Rorug02G0451500 |
| rosa_samantha | Rh2AG518400 Rh2BG529500 Rh2CG503100 Rh2DG538700 |
| rosa_wichuraiana | Rw2G042680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 318 |
| Acc36I | ACCTGC | 3 cut(s) | 413, 926, 3186 |
| AccII | CGCG | 1 cut(s) | 301 |
| AciI | CCGC | 2 cut(s) | 573, 3123 |
| AclI | AACGTT | 1 cut(s) | 1823 |
| AcoI | YGGCCR | 1 cut(s) | 2674 |
| AcuI | CTGAAG | 3 cut(s) | 935, 1173, 2957 |
| AfaI | GTAC | 5 cut(s) | 197, 304, 890, 2258, 2514 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1656, 1731, 1871, 2439 |
| AflII | CTTAAG | 1 cut(s) | 617 |
| AflIII | ACRYGT | 2 cut(s) | 2253, 2763 |
| AgsI | TTSAA | 9 cut(s) | 142, 832, 1098, 1457, 2289, 2497, 3008, 3145, 3192 |
| AjnI | CCWGG | 4 cut(s) | 594, 965, 1869, 2327 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1254, 1286, 2172, 2204 |
| Alw21I | GWGCWC | 1 cut(s) | 2541 |
| Alw26I | GTCTC | 3 cut(s) | 109, 288, 2889 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 997 |
| Ama87I | CYCGRG | 1 cut(s) | 556 |
| AoxI | GGCC | 3 cut(s) | 1873, 2073, 2674 |
| ApeKI | GCWGC | 6 cut(s) | 9, 914, 1841, 1910, 2416, 2771 |
| AseI | ATTAAT | 2 cut(s) | 387, 1335 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1682, 2484 |
| AspA2I | CCTAGG | 1 cut(s) | 2528 |
| AspLEI | GCGC | 2 cut(s) | 319, 1925 |
| AspS9I | GGNCC | 3 cut(s) | 605, 994, 1873 |
| AsuHPI | GGTGA | 4 cut(s) | 26, 824, 1135, 2851 |
| AsuII | TTCGAA | 4 cut(s) | 62, 435, 1508, 1625 |
| AvaI | CYCGRG | 1 cut(s) | 556 |
| AvaII | GGWCC | 2 cut(s) | 605, 994 |
| AvrII | CCTAGG | 1 cut(s) | 2528 |
| BaeGI | GKGCMC | 1 cut(s) | 523 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 286, 319 |
| BauI | CACGAG | 1 cut(s) | 1411 |
| Bbv12I | GWGCWC | 1 cut(s) | 2541 |
| BbvI | GCAGC | 5 cut(s) | 901, 1853, 1897, 2403, 2758 |
| BccI | CCATC | 8 cut(s) | 529, 539, 1105, 1387, 2527, 2803, 2864, 3209 |
| BceAI | ACGGC | 1 cut(s) | 2661 |
| BciT130I | CCWGG | 4 cut(s) | 596, 967, 1871, 2329 |
| BciVI | GTATCC | 2 cut(s) | 2039, 2963 |
| BclI | TGATCA | 1 cut(s) | 190 |
| BcoDI | GTCTC | 3 cut(s) | 109, 288, 2889 |
| BfaI | CTAG | 6 cut(s) | 282, 1032, 1056, 1995, 2529, 2690 |
| BfmI | CTRYAG | 2 cut(s) | 1770, 1911 |
| BfrI | CTTAAG | 1 cut(s) | 617 |
| BfuAI | ACCTGC | 3 cut(s) | 413, 926, 3186 |
| BfuI | GTATCC | 2 cut(s) | 2039, 2963 |
| BglII | AGATCT | 1 cut(s) | 1490 |
| BisI | GCNGC | 7 cut(s) | 10, 915, 1842, 1911, 2417, 2772, 3124 |
| BlnI | CCTAGG | 1 cut(s) | 2528 |
| BlsI | GCNGC | 7 cut(s) | 11, 916, 1843, 1912, 2418, 2773, 3125 |
| Bme1390I | CCNGG | 4 cut(s) | 596, 967, 1871, 2329 |
| Bme18I | GGWCC | 2 cut(s) | 605, 994 |
| BmeT110I | CYCGRG | 1 cut(s) | 556 |
| BmgT120I | GGNCC | 3 cut(s) | 605, 994, 1873 |
| BmiI | GGNNCC | 2 cut(s) | 2526, 2727 |
| BmrFI | CCNGG | 4 cut(s) | 596, 967, 1871, 2329 |
| BmrI | ACTGGG | 1 cut(s) | 1665 |
| BmuI | ACTGGG | 1 cut(s) | 1665 |
| BoxI | GACNNNNGTC | 1 cut(s) | 968 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 440, 472 |
| BpmI | CTGGAG | 3 cut(s) | 2796, 2913, 3032 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3032 |
| Bpu14I | TTCGAA | 4 cut(s) | 62, 435, 1508, 1625 |
| BpuEI | CTTGAG | 1 cut(s) | 826 |
| BsaAI | YACGTR | 2 cut(s) | 465, 2974 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1704 |
| BsaJI | CCNNGG | 5 cut(s) | 966, 1870, 2070, 2076, 2528 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1656, 1731, 1871, 2439 |
| Bse1I | ACTGG | 5 cut(s) | 1660, 2309, 2526, 3015, 3245 |
| Bse3DI | GCAATG | 3 cut(s) | 173, 2365, 2820 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1704 |
| BseBI | CCWGG | 4 cut(s) | 596, 967, 1871, 2329 |
| BseDI | CCNNGG | 5 cut(s) | 966, 1870, 2070, 2076, 2528 |
| BseGI | GGATG | 7 cut(s) | 203, 633, 2020, 2482, 2538, 2814, 2875 |
| BseJI | GATNNNNATC | 1 cut(s) | 1704 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1656, 1731, 1871, 2439 |
| BseMI | GCAATG | 3 cut(s) | 173, 2365, 2820 |
| BseMII | CTCAG | 9 cut(s) | 120, 438, 1389, 1485, 1995, 2158, 2172, 2372, 3023 |
| BseNI | ACTGG | 5 cut(s) | 1660, 2309, 2526, 3015, 3245 |
| BseRI | GAGGAG | 1 cut(s) | 82 |
| BseSI | GKGCMC | 1 cut(s) | 523 |
| BseXI | GCAGC | 5 cut(s) | 901, 1853, 1897, 2403, 2758 |
| BseYI | CCCAGC | 2 cut(s) | 207, 2843 |
| Bsh1236I | CGCG | 1 cut(s) | 301 |
| BshFI | GGCC | 3 cut(s) | 1875, 2075, 2676 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2541 |
| BsiHKCI | CYCGRG | 1 cut(s) | 556 |
| BsiSI | CCGG | 1 cut(s) | 1675 |
| BslFI | GGGAC | 4 cut(s) | 35, 1581, 1614, 2801 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1656, 1731, 1871, 2439 |
| BsmAI | GTCTC | 3 cut(s) | 109, 288, 2889 |
| BsmFI | GGGAC | 4 cut(s) | 35, 1581, 1614, 2801 |
| BsmI | GAATGC | 6 cut(s) | 1093, 1633, 1676, 1833, 1939, 2323 |
| BsnI | GGCC | 3 cut(s) | 1875, 2075, 2676 |
| BsoBI | CYCGRG | 1 cut(s) | 556 |
| Bsp119I | TTCGAA | 4 cut(s) | 62, 435, 1508, 1625 |
| Bsp1286I | GDGCHC | 2 cut(s) | 523, 2541 |
| Bsp143I | GATC | 7 cut(s) | 190, 1425, 1490, 1705, 2422, 2557, 3001 |
| Bsp19I | CCATGG | 1 cut(s) | 2076 |
| BspACI | CCGC | 2 cut(s) | 573, 3123 |
| BspANI | GGCC | 3 cut(s) | 1875, 2075, 2676 |
| BspCNI | CTCAG | 9 cut(s) | 119, 439, 1388, 1486, 1996, 2157, 2171, 2373, 3024 |
| BspFNI | CGCG | 1 cut(s) | 301 |
| BspHI | TCATGA | 1 cut(s) | 1467 |
| BspLI | GGNNCC | 2 cut(s) | 2526, 2727 |
| BspMAI | CTGCAG | 1 cut(s) | 1915 |
| BspMI | ACCTGC | 3 cut(s) | 413, 926, 3186 |
| BspQI | GCTCTTC | 1 cut(s) | 1638 |
| BspT104I | TTCGAA | 4 cut(s) | 62, 435, 1508, 1625 |
| BspTI | CTTAAG | 1 cut(s) | 617 |
| BsrDI | GCAATG | 3 cut(s) | 173, 2365, 2820 |
| BsrI | ACTGG | 5 cut(s) | 1660, 2309, 2526, 3015, 3245 |
| BssECI | CCNNGG | 5 cut(s) | 966, 1870, 2070, 2076, 2528 |
| BssMI | GATC | 7 cut(s) | 190, 1425, 1490, 1705, 2422, 2557, 3001 |
| BssSI | CACGAG | 1 cut(s) | 1411 |
| BssT1I | CCWWGG | 3 cut(s) | 2070, 2076, 2528 |
| Bst2BI | CACGAG | 1 cut(s) | 1411 |
| Bst2UI | CCWGG | 4 cut(s) | 596, 967, 1871, 2329 |
| Bst4CI | ACNGT | 8 cut(s) | 231, 500, 860, 1979, 2140, 2647, 3044, 3087 |
| Bst6I | CTCTTC | 4 cut(s) | 40, 1258, 1481, 1638 |
| BstAFI | CTTAAG | 1 cut(s) | 617 |
| BstBAI | YACGTR | 2 cut(s) | 465, 2974 |
| BstBI | TTCGAA | 4 cut(s) | 62, 435, 1508, 1625 |
| BstDSI | CCRYGG | 1 cut(s) | 2076 |
| BstEII | GGTNACC | 1 cut(s) | 2857 |
| BstF5I | GGATG | 7 cut(s) | 203, 633, 2020, 2482, 2538, 2814, 2875 |
| BstFNI | CGCG | 1 cut(s) | 301 |
| BstHHI | GCGC | 2 cut(s) | 319, 1925 |
| BstKTI | GATC | 7 cut(s) | 193, 1428, 1493, 1708, 2425, 2560, 3004 |
| BstMAI | GTCTC | 3 cut(s) | 109, 288, 2889 |
| BstMBI | GATC | 7 cut(s) | 190, 1425, 1490, 1705, 2422, 2557, 3001 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 1637, 2162, 2401, 2574, 2620, 2810, 3129 |
| BstNI | CCWGG | 4 cut(s) | 596, 967, 1871, 2329 |
| BstNSI | RCATGY | 4 cut(s) | 850, 2257, 2661, 2767 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 968 |
| BstPI | GGTNACC | 1 cut(s) | 2857 |
| BstSCI | CCNGG | 4 cut(s) | 594, 965, 1869, 2327 |
| BstSFI | CTRYAG | 2 cut(s) | 1770, 1911 |
| BstSLI | GKGCMC | 1 cut(s) | 523 |
| BstUI | CGCG | 1 cut(s) | 301 |
| BstV1I | GCAGC | 5 cut(s) | 901, 1853, 1897, 2403, 2758 |
| BstX2I | RGATCY | 1 cut(s) | 1490 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 602, 2077, 2083 |
| BstYI | RGATCY | 1 cut(s) | 1490 |
| BsuI | GTATCC | 2 cut(s) | 2039, 2963 |
| BsuRI | GGCC | 3 cut(s) | 1875, 2075, 2676 |
| BtgI | CCRYGG | 1 cut(s) | 2076 |
| BtsCI | GGATG | 7 cut(s) | 203, 633, 2020, 2482, 2538, 2814, 2875 |
| BtsI | GCAGTG | 1 cut(s) | 84 |
| BtsIMutI | CAGTG | 6 cut(s) | 84, 1149, 1653, 2152, 2316, 3049 |
| BveI | ACCTGC | 3 cut(s) | 413, 926, 3186 |
| CaiI | CAGNNNCTG | 1 cut(s) | 997 |
| CciI | TCATGA | 1 cut(s) | 1467 |
| CfoI | GCGC | 2 cut(s) | 319, 1925 |
| Cfr13I | GGNCC | 3 cut(s) | 605, 994, 1873 |
| Csp6I | GTAC | 5 cut(s) | 196, 303, 889, 2257, 2513 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1784, 1819 |
| CviQI | GTAC | 5 cut(s) | 196, 303, 889, 2257, 2513 |
| DpnI | GATC | 7 cut(s) | 192, 1427, 1492, 1707, 2424, 2559, 3003 |
| DpnII | GATC | 7 cut(s) | 190, 1425, 1490, 1705, 2422, 2557, 3001 |
| DraI | TTTAAA | 1 cut(s) | 529 |
| EaeI | YGGCCR | 1 cut(s) | 2674 |
| Eam1104I | CTCTTC | 4 cut(s) | 40, 1258, 1481, 1638 |
| EarI | CTCTTC | 4 cut(s) | 40, 1258, 1481, 1638 |
| Eco130I | CCWWGG | 3 cut(s) | 2070, 2076, 2528 |
| Eco32I | GATATC | 1 cut(s) | 2343 |
| Eco47I | GGWCC | 2 cut(s) | 605, 994 |
| Eco57I | CTGAAG | 3 cut(s) | 935, 1173, 2957 |
| Eco88I | CYCGRG | 1 cut(s) | 556 |
| Eco91I | GGTNACC | 1 cut(s) | 2857 |
| EcoO109I | RGGNCCY | 1 cut(s) | 994 |
| EcoO65I | GGTNACC | 1 cut(s) | 2857 |
| EcoRI | GAATTC | 4 cut(s) | 781, 1720, 2029, 2332 |
| EcoRII | CCWGG | 4 cut(s) | 594, 965, 1869, 2327 |
| EcoRV | GATATC | 1 cut(s) | 2343 |
| EcoT14I | CCWWGG | 3 cut(s) | 2070, 2076, 2528 |
| EcoT22I | ATGCAT | 2 cut(s) | 1279, 2323 |
| ErhI | CCWWGG | 3 cut(s) | 2070, 2076, 2528 |
| FaqI | GGGAC | 4 cut(s) | 35, 1581, 1614, 2801 |
| FauNDI | CATATG | 3 cut(s) | 268, 1279, 3064 |
| FbaI | TGATCA | 1 cut(s) | 190 |
| Fnu4HI | GCNGC | 7 cut(s) | 10, 915, 1842, 1911, 2417, 2772, 3124 |
| FokI | GGATG | 7 cut(s) | 190, 640, 2027, 2489, 2545, 2821, 2882 |
| Fsp4HI | GCNGC | 7 cut(s) | 10, 915, 1842, 1911, 2417, 2772, 3124 |
| FspBI | CTAG | 6 cut(s) | 282, 1032, 1056, 1995, 2529, 2690 |
| FspI | TGCGCA | 1 cut(s) | 318 |
| GlaI | GCGC | 2 cut(s) | 318, 1924 |
| GluI | GCNGC | 7 cut(s) | 10, 915, 1842, 1911, 2417, 2772, 3124 |
| GsaI | CCCAGC | 2 cut(s) | 211, 2847 |
| GsuI | CTGGAG | 3 cut(s) | 2796, 2913, 3032 |
| HaeIII | GGCC | 3 cut(s) | 1875, 2075, 2676 |
| HapII | CCGG | 1 cut(s) | 1675 |
| HhaI | GCGC | 2 cut(s) | 319, 1925 |
| Hin6I | GCGC | 2 cut(s) | 317, 1923 |
| HinP1I | GCGC | 2 cut(s) | 317, 1923 |
| HincII | GTYRAC | 2 cut(s) | 727, 2251 |
| HindII | GTYRAC | 2 cut(s) | 727, 2251 |
| HindIII | AAGCTT | 5 cut(s) | 322, 614, 833, 1546, 3050 |
| HpaII | CCGG | 1 cut(s) | 1675 |
| HphI | GGTGA | 4 cut(s) | 26, 824, 1135, 2851 |
| Hpy166II | GTNNAC | 5 cut(s) | 24, 394, 727, 891, 2251 |
| Hpy188III | TCNNGA | 9 cut(s) | 981, 1436, 1468, 1690, 1865, 1995, 2043, 3005, 3031 |
| Hpy8I | GTNNAC | 5 cut(s) | 24, 394, 727, 891, 2251 |
| HpyCH4III | ACNGT | 8 cut(s) | 231, 500, 860, 1979, 2140, 2647, 3044, 3087 |
| HpyCH4IV | ACGT | 7 cut(s) | 396, 464, 687, 1517, 1823, 2176, 2973 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 1637, 2162, 2401, 2574, 2620, 2810, 3129 |
| HpySE526I | ACGT | 7 cut(s) | 396, 464, 687, 1517, 1823, 2176, 2973 |
| HspAI | GCGC | 2 cut(s) | 317, 1923 |
| Ksp22I | TGATCA | 1 cut(s) | 190 |
| Kzo9I | GATC | 7 cut(s) | 190, 1425, 1490, 1705, 2422, 2557, 3001 |
| LguI | GCTCTTC | 1 cut(s) | 1638 |
| LmnI | GCTCC | 2 cut(s) | 2530, 2536 |
| Lsp1109I | GCAGC | 5 cut(s) | 901, 1853, 1897, 2403, 2758 |
| MaeI | CTAG | 6 cut(s) | 282, 1032, 1056, 1995, 2529, 2690 |
| MaeII | ACGT | 7 cut(s) | 396, 464, 687, 1517, 1823, 2176, 2973 |
| MaeIII | GTNAC | 6 cut(s) | 460, 1819, 2428, 2678, 2857, 3081 |
| MalI | GATC | 7 cut(s) | 192, 1427, 1492, 1707, 2424, 2559, 3003 |
| MboI | GATC | 7 cut(s) | 190, 1425, 1490, 1705, 2422, 2557, 3001 |
| MfeI | CAATTG | 1 cut(s) | 2244 |
| MflI | RGATCY | 1 cut(s) | 1490 |
| MhlI | GDGCHC | 2 cut(s) | 523, 2541 |
| MlyI | GAGTC | 6 cut(s) | 57, 290, 568, 608, 2114, 2392 |
| MmeI | TCCRAC | 5 cut(s) | 1162, 1535, 1674, 2006, 2703 |
| Mph1103I | ATGCAT | 2 cut(s) | 1279, 2323 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1682, 2484 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1097, 1166, 1278, 1665, 2196 |
| MspA1I | CMGCKG | 1 cut(s) | 2416 |
| MspCI | CTTAAG | 1 cut(s) | 617 |
| MspI | CCGG | 1 cut(s) | 1675 |
| MspR9I | CCNGG | 4 cut(s) | 596, 967, 1871, 2329 |
| MunI | CAATTG | 1 cut(s) | 2244 |
| Mva1269I | GAATGC | 6 cut(s) | 1093, 1633, 1676, 1833, 1939, 2323 |
| MvaI | CCWGG | 4 cut(s) | 596, 967, 1871, 2329 |
| MvnI | CGCG | 1 cut(s) | 301 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 1637, 2162, 2401, 2574, 2620, 2810, 3129 |
| NcoI | CCATGG | 1 cut(s) | 2076 |
| NdeI | CATATG | 3 cut(s) | 268, 1279, 3064 |
| NdeII | GATC | 7 cut(s) | 190, 1425, 1490, 1705, 2422, 2557, 3001 |
| NlaIV | GGNNCC | 2 cut(s) | 2526, 2727 |
| NmeAIII | GCCGAG | 1 cut(s) | 2690 |
| NmuCI | GTSAC | 2 cut(s) | 2857, 3081 |
| NsbI | TGCGCA | 1 cut(s) | 318 |
| NsiI | ATGCAT | 2 cut(s) | 1279, 2323 |
| NspI | RCATGY | 4 cut(s) | 850, 2257, 2661, 2767 |
| NspV | TTCGAA | 4 cut(s) | 62, 435, 1508, 1625 |
| PaeI | GCATGC | 1 cut(s) | 850 |
| PagI | TCATGA | 1 cut(s) | 1467 |
| PciI | ACATGT | 2 cut(s) | 2253, 2763 |
| PciSI | GCTCTTC | 1 cut(s) | 1638 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1514 |
| PctI | GAATGC | 6 cut(s) | 1093, 1633, 1676, 1833, 1939, 2323 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1682, 2484 |
| PfeI | GAWTC | 7 cut(s) | 200, 658, 815, 1196, 1882, 2219, 3188 |
| PfoI | TCCNGGA | 1 cut(s) | 2327 |
| PkrI | GCNGC | 7 cut(s) | 11, 916, 1843, 1912, 2418, 2773, 3125 |
| PleI | GAGTC | 6 cut(s) | 56, 290, 567, 607, 2114, 2391 |
| PpsI | GAGTC | 6 cut(s) | 56, 290, 567, 607, 2114, 2391 |
| Ppu21I | YACGTR | 2 cut(s) | 465, 2974 |
| PpuMI | RGGWCCY | 1 cut(s) | 994 |
| PscI | ACATGT | 2 cut(s) | 2253, 2763 |
| PshAI | GACNNNNGTC | 1 cut(s) | 968 |
| PshBI | ATTAAT | 2 cut(s) | 387, 1335 |
| Psp1406I | AACGTT | 1 cut(s) | 1823 |
| Psp5II | RGGWCCY | 1 cut(s) | 994 |
| Psp6I | CCWGG | 4 cut(s) | 594, 965, 1869, 2327 |
| PspEI | GGTNACC | 1 cut(s) | 2857 |
| PspFI | CCCAGC | 2 cut(s) | 207, 2843 |
| PspGI | CCWGG | 4 cut(s) | 594, 965, 1869, 2327 |
| PspN4I | GGNNCC | 2 cut(s) | 2526, 2727 |
| PspPI | GGNCC | 3 cut(s) | 605, 994, 1873 |
| PspPPI | RGGWCCY | 1 cut(s) | 994 |
| PstI | CTGCAG | 1 cut(s) | 1915 |
| PstNI | CAGNNNCTG | 1 cut(s) | 997 |
| PsuI | RGATCY | 1 cut(s) | 1490 |
| PvuII | CAGCTG | 1 cut(s) | 2416 |
| RsaI | GTAC | 5 cut(s) | 197, 304, 890, 2258, 2514 |
| RsaNI | GTAC | 5 cut(s) | 196, 303, 889, 2257, 2513 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1097, 1166, 1278, 1665, 2196 |
| SapI | GCTCTTC | 1 cut(s) | 1638 |
| SatI | GCNGC | 7 cut(s) | 10, 915, 1842, 1911, 2417, 2772, 3124 |
| Sau3AI | GATC | 7 cut(s) | 190, 1425, 1490, 1705, 2422, 2557, 3001 |
| Sau96I | GGNCC | 3 cut(s) | 605, 994, 1873 |
| SchI | GAGTC | 6 cut(s) | 57, 290, 568, 608, 2114, 2392 |
| ScrFI | CCNGG | 4 cut(s) | 596, 967, 1871, 2329 |
| SduI | GDGCHC | 2 cut(s) | 523, 2541 |
| SfcI | CTRYAG | 2 cut(s) | 1770, 1911 |
| SfuI | TTCGAA | 4 cut(s) | 62, 435, 1508, 1625 |
| SinI | GGWCC | 2 cut(s) | 605, 994 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1097, 1166, 1278, 1665, 2196 |
| SmlI | CTYRAG | 2 cut(s) | 617, 841 |
| SmoI | CTYRAG | 2 cut(s) | 617, 841 |
| SphI | GCATGC | 1 cut(s) | 850 |
| SsiI | CCGC | 2 cut(s) | 573, 3123 |
| SspI | AATATT | 1 cut(s) | 1778 |
| SspMI | CTAG | 6 cut(s) | 282, 1032, 1056, 1995, 2529, 2690 |
| StyD4I | CCNGG | 4 cut(s) | 594, 965, 1869, 2327 |
| StyI | CCWWGG | 3 cut(s) | 2070, 2076, 2528 |
| TaaI | ACNGT | 8 cut(s) | 231, 500, 860, 1979, 2140, 2647, 3044, 3087 |
| TaiI | ACGT | 7 cut(s) | 399, 467, 690, 1520, 1826, 2179, 2976 |
| TaqI | TCGA | 9 cut(s) | 62, 160, 286, 435, 586, 1508, 1625, 2556, 3155 |
| TatI | WGTACW | 3 cut(s) | 888, 2256, 2512 |
| TauI | GCSGC | 1 cut(s) | 3126 |
| TfiI | GAWTC | 7 cut(s) | 200, 658, 815, 1196, 1882, 2219, 3188 |
| TscAI | CASTG | 6 cut(s) | 91, 1156, 1660, 2152, 2316, 3049 |
| TseFI | GTSAC | 2 cut(s) | 2857, 3081 |
| TseI | GCWGC | 6 cut(s) | 9, 914, 1841, 1910, 2416, 2771 |
| Tsp45I | GTSAC | 2 cut(s) | 2857, 3081 |
| TspGWI | ACGGA | 2 cut(s) | 1466, 3104 |
| TspRI | CASTG | 6 cut(s) | 91, 1156, 1660, 2152, 2316, 3049 |
| Vha464I | CTTAAG | 1 cut(s) | 617 |
| VpaK11BI | GGWCC | 2 cut(s) | 605, 994 |
| VspI | ATTAAT | 2 cut(s) | 387, 1335 |
| XbaI | TCTAGA | 1 cut(s) | 1994 |
| XceI | RCATGY | 4 cut(s) | 850, 2257, 2661, 2767 |
| XmaJI | CCTAGG | 1 cut(s) | 2528 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1682, 2484 |
| XspI | CTAG | 6 cut(s) | 282, 1032, 1056, 1995, 2529, 2690 |
| Zsp2I | ATGCAT | 2 cut(s) | 1279, 2323 |