Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G10330 |
| fragaria_vesca | FvH4_6g42841 |
| malus_domestica | MD09G1072300.v1.1 |
| prunus_persica | Prupe.3G214500_v2.0.a1 |
| pyrus_communis | pycom09g03390 pycom09g03410 pycom09g03420 pycom17g09460 |
| rosa_chinensis | RchiOBHm_Chr2g0158781 |
| rosa_laevigata | RLG00000021112 RLG00000025824 |
| rosa_multiflora | Rmu_sc0003664.1_g000002 Rmu_sc0003664.1_g000004 Rmu_sc0038467.1_g000001 Rmu_sc0038467.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00091010 |
| rosa_rugosa | Rorug02G0472600 |
| rosa_samantha | Rh2BG550900 Rh2CG521400 Rh2DG560700 |
| rosa_wichuraiana | Rw2G044540 Rw3G001550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 187 |
| AclWI | GGATC | 4 cut(s) | 270, 564, 579, 592 |
| AcsI | RAATTY | 2 cut(s) | 160, 379 |
| AcuI | CTGAAG | 1 cut(s) | 329 |
| AgsI | TTSAA | 4 cut(s) | 88, 437, 496, 605 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 272, 304, 380, 412 |
| AluBI | AGCT | 4 cut(s) | 128, 307, 365, 595 |
| AluI | AGCT | 4 cut(s) | 128, 307, 365, 595 |
| Alw21I | GWGCWC | 1 cut(s) | 453 |
| AlwI | GGATC | 4 cut(s) | 270, 564, 579, 592 |
| AoxI | GGCC | 1 cut(s) | 329 |
| ApeKI | GCWGC | 1 cut(s) | 631 |
| ApoI | RAATTY | 2 cut(s) | 160, 379 |
| AspA2I | CCTAGG | 1 cut(s) | 475 |
| AsuHPI | GGTGA | 3 cut(s) | 80, 112, 397 |
| AvrII | CCTAGG | 1 cut(s) | 475 |
| BamHI | GGATCC | 1 cut(s) | 584 |
| Bbv12I | GWGCWC | 1 cut(s) | 453 |
| BbvI | GCAGC | 1 cut(s) | 643 |
| BccI | CCATC | 2 cut(s) | 91, 307 |
| BfaI | CTAG | 1 cut(s) | 476 |
| BfuAI | ACCTGC | 1 cut(s) | 187 |
| BisI | GCNGC | 1 cut(s) | 632 |
| BlnI | CCTAGG | 1 cut(s) | 475 |
| BlsI | GCNGC | 1 cut(s) | 633 |
| BmiI | GGNNCC | 1 cut(s) | 586 |
| BmsI | GCATC | 1 cut(s) | 529 |
| BsaJI | CCNNGG | 2 cut(s) | 420, 475 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 52, 82 |
| BseDI | CCNNGG | 2 cut(s) | 420, 475 |
| BseGI | GGATG | 2 cut(s) | 19, 99 |
| BseMII | CTCAG | 1 cut(s) | 582 |
| BseXI | GCAGC | 1 cut(s) | 643 |
| BseYI | CCCAGC | 1 cut(s) | 595 |
| BshFI | GGCC | 1 cut(s) | 331 |
| BsiHKAI | GWGCWC | 1 cut(s) | 453 |
| BslFI | GGGAC | 1 cut(s) | 262 |
| BsmFI | GGGAC | 1 cut(s) | 262 |
| BsnI | GGCC | 1 cut(s) | 331 |
| Bsp1286I | GDGCHC | 1 cut(s) | 453 |
| Bsp143I | GATC | 4 cut(s) | 262, 469, 556, 584 |
| BspANI | GGCC | 1 cut(s) | 331 |
| BspCNI | CTCAG | 1 cut(s) | 583 |
| BspLI | GGNNCC | 1 cut(s) | 586 |
| BspMI | ACCTGC | 1 cut(s) | 187 |
| BspPI | GGATC | 4 cut(s) | 270, 564, 579, 592 |
| BssECI | CCNNGG | 2 cut(s) | 420, 475 |
| BssMI | GATC | 4 cut(s) | 262, 469, 556, 584 |
| BssT1I | CCWWGG | 2 cut(s) | 420, 475 |
| BstDEI | CTNAG | 1 cut(s) | 591 |
| BstF5I | GGATG | 2 cut(s) | 19, 99 |
| BstKTI | GATC | 4 cut(s) | 265, 472, 559, 587 |
| BstMBI | GATC | 4 cut(s) | 262, 469, 556, 584 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 532, 637 |
| BstV1I | GCAGC | 1 cut(s) | 643 |
| BstX2I | RGATCY | 3 cut(s) | 262, 556, 584 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 595 |
| BstYI | RGATCY | 3 cut(s) | 262, 556, 584 |
| BsuRI | GGCC | 1 cut(s) | 331 |
| BtsCI | GGATG | 2 cut(s) | 19, 99 |
| BtsIMutI | CAGTG | 1 cut(s) | 588 |
| BveI | ACCTGC | 1 cut(s) | 187 |
| CviAII | CATG | 3 cut(s) | 203, 523, 581 |
| CviJI | RGCY | 9 cut(s) | 118, 128, 287, 307, 331, 365, 535, 595, 634 |
| CviKI_1 | RGCY | 9 cut(s) | 118, 128, 287, 307, 331, 365, 535, 595, 634 |
| DdeI | CTNAG | 1 cut(s) | 591 |
| DpnI | GATC | 4 cut(s) | 264, 471, 558, 586 |
| DpnII | GATC | 4 cut(s) | 262, 469, 556, 584 |
| DraI | TTTAAA | 1 cut(s) | 409 |
| Eco130I | CCWWGG | 2 cut(s) | 420, 475 |
| Eco57I | CTGAAG | 1 cut(s) | 329 |
| EcoT14I | CCWWGG | 2 cut(s) | 420, 475 |
| ErhI | CCWWGG | 2 cut(s) | 420, 475 |
| FaeI | CATG | 3 cut(s) | 206, 526, 584 |
| FaiI | YATR | 9 cut(s) | 184, 204, 210, 230, 245, 270, 456, 524, 582 |
| FaqI | GGGAC | 1 cut(s) | 262 |
| FatI | CATG | 3 cut(s) | 202, 522, 580 |
| Fnu4HI | GCNGC | 1 cut(s) | 632 |
| FokI | GGATG | 2 cut(s) | 26, 106 |
| Fsp4HI | GCNGC | 1 cut(s) | 632 |
| FspBI | CTAG | 1 cut(s) | 476 |
| GluI | GCNGC | 1 cut(s) | 632 |
| GsaI | CCCAGC | 1 cut(s) | 599 |
| HaeIII | GGCC | 1 cut(s) | 331 |
| Hin1II | CATG | 3 cut(s) | 206, 526, 584 |
| HinfI | GANTC | 1 cut(s) | 577 |
| HphI | GGTGA | 3 cut(s) | 80, 112, 397 |
| Hpy166II | GTNNAC | 1 cut(s) | 27 |
| Hpy188III | TCNNGA | 1 cut(s) | 88 |
| Hpy8I | GTNNAC | 1 cut(s) | 27 |
| HpyAV | CCTTC | 2 cut(s) | 268, 274 |
| HpyCH4V | TGCA | 2 cut(s) | 353, 631 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 532, 637 |
| HpyF3I | CTNAG | 1 cut(s) | 591 |
| Hsp92II | CATG | 3 cut(s) | 206, 526, 584 |
| Kzo9I | GATC | 4 cut(s) | 262, 469, 556, 584 |
| LmnI | GCTCC | 1 cut(s) | 448 |
| LpnPI | CCDG | 3 cut(s) | 182, 549, 581 |
| Lsp1109I | GCAGC | 1 cut(s) | 643 |
| LweI | GCATC | 1 cut(s) | 529 |
| MaeI | CTAG | 1 cut(s) | 476 |
| MaeIII | GTNAC | 1 cut(s) | 340 |
| MalI | GATC | 4 cut(s) | 264, 471, 558, 586 |
| MboI | GATC | 4 cut(s) | 262, 469, 556, 584 |
| MboII | GAAGA | 2 cut(s) | 17, 322 |
| MflI | RGATCY | 3 cut(s) | 262, 556, 584 |
| MhlI | GDGCHC | 1 cut(s) | 453 |
| MluCI | AATT | 4 cut(s) | 160, 379, 600, 617 |
| MseI | TTAA | 1 cut(s) | 408 |
| MslI | CAYNNNNRTG | 1 cut(s) | 207 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 532, 637 |
| NdeII | GATC | 4 cut(s) | 262, 469, 556, 584 |
| NlaIII | CATG | 3 cut(s) | 206, 526, 584 |
| NlaIV | GGNNCC | 1 cut(s) | 586 |
| PfeI | GAWTC | 1 cut(s) | 577 |
| PkrI | GCNGC | 1 cut(s) | 633 |
| PspFI | CCCAGC | 1 cut(s) | 595 |
| PspN4I | GGNNCC | 1 cut(s) | 586 |
| PsuI | RGATCY | 3 cut(s) | 262, 556, 584 |
| RseI | CAYNNNNRTG | 1 cut(s) | 207 |
| SaqAI | TTAA | 1 cut(s) | 408 |
| SatI | GCNGC | 1 cut(s) | 632 |
| Sau3AI | GATC | 4 cut(s) | 262, 469, 556, 584 |
| SduI | GDGCHC | 1 cut(s) | 453 |
| SetI | ASST | 9 cut(s) | 65, 130, 201, 228, 309, 326, 342, 367, 597 |
| SfaNI | GCATC | 1 cut(s) | 529 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 207 |
| Sse9I | AATT | 4 cut(s) | 160, 379, 600, 617 |
| SspMI | CTAG | 1 cut(s) | 476 |
| StyI | CCWWGG | 2 cut(s) | 420, 475 |
| TasI | AATT | 4 cut(s) | 160, 379, 600, 617 |
| TfiI | GAWTC | 1 cut(s) | 577 |
| Tru1I | TTAA | 1 cut(s) | 408 |
| Tru9I | TTAA | 1 cut(s) | 408 |
| TscAI | CASTG | 1 cut(s) | 595 |
| TseI | GCWGC | 1 cut(s) | 631 |
| TspDTI | ATGAA | 3 cut(s) | 138, 191, 569 |
| TspRI | CASTG | 1 cut(s) | 595 |
| XapI | RAATTY | 2 cut(s) | 160, 379 |
| XmaJI | CCTAGG | 1 cut(s) | 475 |
| XspI | CTAG | 1 cut(s) | 476 |