Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038467.1

Orthogroup ID

OG0009495

Physical Location & Seq

Genomic Coordinates Reverse (-)

31 .. 1233

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038467.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

atgctttcccaccaagcccaccccaacagccacacattccctccgctcgtcaaagccgtcgccgtcgccggcggcggtggctggccatgttacggcagagccctccacgcccaagttgtgaaacgcggcgtttggggtgacccggttgtgcagacgtcgtttgtgagcatgtatgctcggtttggtgaagtgtgggacgcacgcaaggtgttcgatgaaatgactgaaccgtgtgtggttgcgtgcaatgcgatgattgatgggttggggaagaatggggacatgggtggtgctgtttcgatgttcgaaaggatgccggagagggatgtggtttcgtggacgagtgtgattagtgggtttgggatgaatgggtggtttggtgagggggtttggtttttcaagaggatgatggggagtgaggatgtgaggggtggttttgtgaagccaaatgaagctacttttgttagtgtgctttcttcatgtgctaatttggatgggtggggatctctttattgggggaagcaaattcatgggcatgttgttaggaatgaggtgcagttgagtgtttttatggggactgcattggtggatctttatgggaagtcgggttgtttgagtggtgcttggaatgttttcgaggaaatgagggttaaagaagtttgtacatggaacgcaatgatctcagcgctttctttgaatggcagagagaaggaggctttggagttgtttgagaaaatgatggaaaagaggttgcggccgaatgaggttacatttgttgcagttctcacagcttgtgctcatgggaattcagtgaagtgtggtttggatttgtttaaatcaatgtccaaggactttggggttgaaccaataatggaacactatggttgtgtggttgatctcctcggcagagcaggactttttaaggaggcaactgaacttcttaagaacatgccttttgagcctgatgcttctgtgttgggggctcttttgggttcttgtaagattcatgggaccactgagctgggaaatgaagttgggaaaaaattgattgagttgcagccacagcattgtggacgatacttggttttgtcaaacatttatgctgcgaacgagaggtgggatcatgctgcttctgtgaggaaagcaatggtacatgctggaattcagaaaattccagcctttagtaggattgacgtaaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

400

Amino Acids

43.97

Weight (kDa)

6.86

Isoelectric Point (pI)

30.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10330
fragaria_vesca	FvH4_6g42841
malus_domestica	MD09G1072300.v1.1
prunus_persica	Prupe.3G214500_v2.0.a1
pyrus_communis	pycom09g03390 pycom09g03410 pycom09g03420 pycom17g09460
rosa_chinensis	RchiOBHm_Chr2g0158781
rosa_laevigata	RLG00000021112 RLG00000025824
rosa_multiflora	Rmu_sc0003664.1_g000002 Rmu_sc0003664.1_g000004 Rmu_sc0038467.1_g000001 Rmu_sc0038467.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091010
rosa_rugosa	Rorug02G0472600
rosa_samantha	Rh2BG550900 Rh2CG521400 Rh2DG560700
rosa_wichuraiana	Rw2G044540 Rw3G001550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	158
AccBSI	CCGCTC	1 cut(s)	46
AccII	CGCG	1 cut(s)	126
AciI	CCGC	5 cut(s)	44, 72, 75, 126, 754
AclWI	GGATC	3 cut(s)	511, 597, 1128
AcoI	YGGCCR	2 cut(s)	83, 755
AcsI	RAATTY	4 cut(s)	525, 805, 1161, 1170
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	2 cut(s)	664, 1152
AfeI	AGCGCT	1 cut(s)	687
AfiI	CCNNNNNNNGG	2 cut(s)	92, 1185
AflII	CTTAAG	1 cut(s)	941
AgsI	TTSAA	3 cut(s)	400, 697, 863
AjuI	GAANNNNNNNTTGG	4 cut(s)	701, 733, 806, 838
AluBI	AGCT	3 cut(s)	455, 791, 1021
AluI	AGCT	3 cut(s)	455, 791, 1021
Alw21I	GWGCWC	1 cut(s)	799
AlwI	GGATC	3 cut(s)	511, 597, 1128
Aor51HI	AGCGCT	1 cut(s)	687
AoxI	GGCC	2 cut(s)	83, 755
ApeKI	GCWGC	3 cut(s)	1057, 1103, 1127
ApoI	RAATTY	4 cut(s)	525, 805, 1161, 1170
Asp700I	GAANNNNTTC	1 cut(s)	632
AspLEI	GCGC	1 cut(s)	688
AspS9I	GGNCC	1 cut(s)	1011
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	3 cut(s)	149, 197, 392
AsuII	TTCGAA	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	1011
BalI	TGGCCA	1 cut(s)	85
BanII	GRGCYC	2 cut(s)	103, 985
Bbv12I	GWGCWC	1 cut(s)	799
BbvI	GCAGC	3 cut(s)	1069, 1090, 1114
BccI	CCATC	4 cut(s)	254, 403, 488, 733
BceAI	ACGGC	3 cut(s)	41, 47, 109
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BcnI	CCSGG	1 cut(s)	143
BfoI	RGCGCY	1 cut(s)	689
BfrI	CTTAAG	1 cut(s)	941
BisI	GCNGC	6 cut(s)	73, 127, 755, 1058, 1104, 1128
BlsI	GCNGC	6 cut(s)	74, 128, 756, 1059, 1105, 1129
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	1011
BmgT120I	GGNCC	1 cut(s)	1011
BmiI	GGNNCC	1 cut(s)	1012
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	2 cut(s)	303, 955
Bpu14I	TTCGAA	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	143
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	846, 901
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 1185
Bse118I	RCCGGY	1 cut(s)	68
Bse3DI	GCAATG	3 cut(s)	253, 681, 1152
BseDI	CCNNGG	2 cut(s)	846, 901
BseGI	GGATG	6 cut(s)	318, 331, 369, 411, 427, 499
BseLI	CCNNNNNNNGG	2 cut(s)	92, 1185
BseMI	GCAATG	3 cut(s)	253, 681, 1152
BseMII	CTCAG	2 cut(s)	696, 1008
BseRI	GAGGAG	1 cut(s)	890
BseX3I	CGGCCG	1 cut(s)	755
BseXI	GCAGC	3 cut(s)	1069, 1090, 1114
BseYI	CCCAGC	1 cut(s)	1021
BsgI	GTGCAG	2 cut(s)	170, 575
Bsh1236I	CGCG	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	758
BshFI	GGCC	2 cut(s)	85, 757
BsiEI	CGRYCG	1 cut(s)	758
BsiHKAI	GWGCWC	1 cut(s)	799
BsiSI	CCGG	3 cut(s)	69, 143, 317
BslFI	GGGAC	4 cut(s)	209, 293, 589, 1024
BslI	CCNNNNNNNGG	2 cut(s)	92, 1185
BsmFI	GGGAC	4 cut(s)	209, 293, 589, 1024
BsnI	GGCC	2 cut(s)	85, 757
Bsp119I	TTCGAA	1 cut(s)	306
Bsp1286I	GDGCHC	3 cut(s)	103, 799, 985
Bsp1407I	TGTACA	1 cut(s)	662
Bsp143I	GATC	5 cut(s)	503, 589, 678, 895, 1120
BspACI	CCGC	5 cut(s)	44, 72, 75, 126, 754
BspANI	GGCC	2 cut(s)	85, 757
BspCNI	CTCAG	2 cut(s)	695, 1009
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	1012
BspPI	GGATC	3 cut(s)	511, 597, 1128
BspT104I	TTCGAA	1 cut(s)	306
BspTI	CTTAAG	1 cut(s)	941
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	3 cut(s)	253, 681, 1152
BsrFI	RCCGGY	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	662
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	846, 901
BssMI	GATC	5 cut(s)	503, 589, 678, 895, 1120
BssNI	GRCGYC	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	846
Bst4CI	ACNGT	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	155
BstAFI	CTTAAG	1 cut(s)	941
BstAUI	TGTACA	1 cut(s)	662
BstBI	TTCGAA	1 cut(s)	306
BstC8I	GCNNGC	4 cut(s)	70, 83, 202, 244
BstDEI	CTNAG	2 cut(s)	682, 1017
BstEII	GGTNACC	1 cut(s)	137
BstENI	CCTNNNNNAGG	1 cut(s)	1183
BstF5I	GGATG	6 cut(s)	318, 331, 369, 411, 427, 499
BstFNI	CGCG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	689
BstHHI	GCGC	1 cut(s)	688
BstKTI	GATC	5 cut(s)	506, 592, 681, 898, 1123
BstMBI	GATC	5 cut(s)	503, 589, 678, 895, 1120
BstMCI	CGRYCG	1 cut(s)	758
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 107, 248, 958, 1063
BstNSI	RCATGY	4 cut(s)	172, 539, 952, 1157
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	141
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	3 cut(s)	1069, 1090, 1114
BstX2I	RGATCY	2 cut(s)	503, 589
BstXI	CCANNNNNNTGG	1 cut(s)	1021
BstYI	RGATCY	2 cut(s)	503, 589
BstZI	CGGCCG	1 cut(s)	755
BsuRI	GGCC	2 cut(s)	85, 757
BtgZI	GCGATG	1 cut(s)	266
BtsCI	GGATG	6 cut(s)	318, 331, 369, 411, 427, 499
BtsIMutI	CAGTG	2 cut(s)	816, 1014
Cac8I	GCNNGC	4 cut(s)	70, 83, 202, 244
CfoI	GCGC	1 cut(s)	688
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	1011
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	663, 1151
CviQI	GTAC	2 cut(s)	663, 1151
DdeI	CTNAG	2 cut(s)	682, 1017
DpnI	GATC	5 cut(s)	505, 591, 680, 897, 1122
DpnII	GATC	5 cut(s)	503, 589, 678, 895, 1120
DraI	TTTAAA	1 cut(s)	835
EaeI	YGGCCR	2 cut(s)	83, 755
EagI	CGGCCG	1 cut(s)	755
EclXI	CGGCCG	1 cut(s)	755
Eco130I	CCWWGG	1 cut(s)	846
Eco24I	GRGCYC	2 cut(s)	103, 985
Eco47I	GGWCC	1 cut(s)	1011
Eco47III	AGCGCT	1 cut(s)	687
Eco52I	CGGCCG	1 cut(s)	755
Eco91I	GGTNACC	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	1183
EcoO65I	GGTNACC	1 cut(s)	137
EcoRI	GAATTC	2 cut(s)	805, 1161
EcoT14I	CCWWGG	1 cut(s)	846
EcoT38I	GRGCYC	2 cut(s)	103, 985
ErhI	CCWWGG	1 cut(s)	846
FaqI	GGGAC	4 cut(s)	209, 293, 589, 1024
Fnu4HI	GCNGC	6 cut(s)	73, 127, 755, 1058, 1104, 1128
FokI	GGATG	6 cut(s)	325, 338, 376, 418, 434, 506
FriOI	GRGCYC	2 cut(s)	103, 985
Fsp4HI	GCNGC	6 cut(s)	73, 127, 755, 1058, 1104, 1128
GlaI	GCGC	1 cut(s)	687
GluI	GCNGC	6 cut(s)	73, 127, 755, 1058, 1104, 1128
GsaI	CCCAGC	1 cut(s)	1025
HaeII	RGCGCY	1 cut(s)	689
HaeIII	GGCC	2 cut(s)	85, 757
HapII	CCGG	3 cut(s)	69, 143, 317
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	688
Hin1I	GRCGYC	1 cut(s)	155
Hin6I	GCGC	1 cut(s)	686
HinP1I	GCGC	1 cut(s)	686
HinfI	GANTC	1 cut(s)	1003
HpaII	CCGG	3 cut(s)	69, 143, 317
HphI	GGTGA	3 cut(s)	149, 197, 392
Hpy166II	GTNNAC	2 cut(s)	339, 1073
Hpy188I	TCNGA	1 cut(s)	1167
Hpy188III	TCNNGA	1 cut(s)	400
Hpy8I	GTNNAC	2 cut(s)	339, 1073
Hpy99I	CGWCG	3 cut(s)	62, 68, 160
HpyAV	CCTTC	1 cut(s)	703
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4IV	ACGT	2 cut(s)	155, 1194
HpyCH4V	TGCA	6 cut(s)	151, 246, 556, 581, 779, 1057
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 107, 248, 958, 1063
HpyF3I	CTNAG	2 cut(s)	682, 1017
HpySE526I	ACGT	2 cut(s)	155, 1194
Hsp92I	GRCGYC	1 cut(s)	155
HspAI	GCGC	1 cut(s)	686
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Kzo9I	GATC	5 cut(s)	503, 589, 678, 895, 1120
LpnPI	CCDG	9 cut(s)	67, 82, 156, 330, 897, 975, 1007, 1143, 1188
Lsp1109I	GCAGC	3 cut(s)	1069, 1090, 1114
LweI	GCATC	2 cut(s)	303, 955
MaeII	ACGT	2 cut(s)	155, 1194
MaeIII	GTNAC	3 cut(s)	89, 137, 766
MalI	GATC	5 cut(s)	505, 591, 680, 897, 1122
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	5 cut(s)	503, 589, 678, 895, 1120
MboII	GAAGA	2 cut(s)	283, 468
MflI	RGATCY	2 cut(s)	503, 589
MhlI	GDGCHC	3 cut(s)	103, 799, 985
MlsI	TGGCCA	1 cut(s)	85
MluCI	AATT	6 cut(s)	487, 525, 805, 1043, 1161, 1170
MluNI	TGGCCA	1 cut(s)	85
Mox20I	TGGCCA	1 cut(s)	85
MreI	CGCCGGCG	1 cut(s)	68
MroNI	GCCGGC	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	632
MscI	TGGCCA	1 cut(s)	85
MseI	TTAA	4 cut(s)	651, 834, 921, 942
MslI	CAYNNNNRTG	1 cut(s)	534
Msp20I	TGGCCA	1 cut(s)	85
MspCI	CTTAAG	1 cut(s)	941
MspI	CCGG	3 cut(s)	69, 143, 317
MspR9I	CCNGG	1 cut(s)	143
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	5 cut(s)	78, 107, 248, 958, 1063
NaeI	GCCGGC	1 cut(s)	70
NciI	CCSGG	1 cut(s)	143
NdeII	GATC	5 cut(s)	503, 589, 678, 895, 1120
NgoMIV	GCCGGC	1 cut(s)	68
NlaIV	GGNNCC	1 cut(s)	1012
NmeAIII	GCCGAG	1 cut(s)	882
NmuCI	GTSAC	1 cut(s)	137
NspI	RCATGY	4 cut(s)	172, 539, 952, 1157
NspV	TTCGAA	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdiI	GCCGGC	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	632
PfeI	GAWTC	1 cut(s)	1003
PkrI	GCNGC	6 cut(s)	74, 128, 756, 1059, 1105, 1129
PspEI	GGTNACC	1 cut(s)	137
PspFI	CCCAGC	1 cut(s)	1021
PspN4I	GGNNCC	1 cut(s)	1012
PspPI	GGNCC	1 cut(s)	1011
PsuI	RGATCY	2 cut(s)	503, 589
RsaI	GTAC	2 cut(s)	664, 1152
RsaNI	GTAC	2 cut(s)	663, 1151
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	4 cut(s)	651, 834, 921, 942
SatI	GCNGC	6 cut(s)	73, 127, 755, 1058, 1104, 1128
Sau3AI	GATC	5 cut(s)	503, 589, 678, 895, 1120
Sau96I	GGNCC	1 cut(s)	1011
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	3 cut(s)	103, 799, 985
SfaNI	GCATC	2 cut(s)	303, 955
SfuI	TTCGAA	1 cut(s)	306
SgrAI	CRCCGGYG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	1011
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	1 cut(s)	941
SmoI	CTYRAG	1 cut(s)	941
Sse9I	AATT	6 cut(s)	487, 525, 805, 1043, 1161, 1170
SsiI	CCGC	5 cut(s)	44, 72, 75, 126, 754
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	846
TaaI	ACNGT	1 cut(s)	231
TaiI	ACGT	2 cut(s)	158, 1197
TaqI	TCGA	4 cut(s)	213, 299, 306, 636
TasI	AATT	6 cut(s)	487, 525, 805, 1043, 1161, 1170
TatI	WGTACW	1 cut(s)	662
TauI	GCSGC	3 cut(s)	75, 129, 757
TfiI	GAWTC	1 cut(s)	1003
Tru1I	TTAA	4 cut(s)	651, 834, 921, 942
Tru9I	TTAA	4 cut(s)	651, 834, 921, 942
TscAI	CASTG	2 cut(s)	816, 1021
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	3 cut(s)	1057, 1103, 1127
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	7 cut(s)	231, 380, 465, 468, 518, 995, 1044
TspRI	CASTG	2 cut(s)	816, 1021
Vha464I	CTTAAG	1 cut(s)	941
VpaK11BI	GGWCC	1 cut(s)	1011
XagI	CCTNNNNNAGG	1 cut(s)	1183
XapI	RAATTY	4 cut(s)	525, 805, 1161, 1170
XceI	RCATGY	4 cut(s)	172, 539, 952, 1157
XmnI	GAANNNNTTC	1 cut(s)	632
ZraI	GACGTC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.