Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009495

Physical Location & Seq

Genomic Coordinates Reverse (-)

21791159 .. 21792580

Gene Structure 1422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G214500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGCCACGTTCATCATCTCCCGAGTGTTTACTGGAACTCCTCCAACGCTTCCTCAAACGCCCAAACCAAATCAACCAAATCCATTCCCGCCTTATCTCCCACGGTCATCTCCTCCACAGCCCAAACCCTAGCTCAGCTTCAAAATGGATGACGACCCTCCTTTACAACACTTTGATCAGAGCCCATCTCGGTTTCAGCCAAGCCCACAAGCCTTTCCTCCTCTTCACCCACATGCTTGCCCACCAAGCCCCGCCCAACAGCCACACCTTCCCTCCGCTTATCAAAGCCGCCTCTGCCTCTTCCTCCCCCAATTTGGGCGCGCCCCTTCATACCCAAGTTGTGAAACGGGGCGTTCTGCATGACTCATTTATACAAACCTCGCTTGTTAGCTTCTATGCTCAGTTTGGTATTTTGTGTGATGCTCGCAAGGTGTTTGAGGAAATTTCTGAACCGTGTGTTGTAGCGTACAATGCGATGATTGATGGGTTTGGGAAGAATGGGGATGTGGGTTCGGCTGTTTCGCTCTTTCAAAGCATGCCCAAGAAGGACGTGGTTTCGTGGACAAGTGTTATTAATGGGTTCGGGAGAAATGGGAGTTTCAGTGAGGGGATTCAGTTTTTTAAGATGATGGTGCATGAGGATTTGATGGGTTGTTTTGTAAAGCCAAATGAAGCTACTTATGTTACTGTGCTTTCTTCATGTGCTAATTTGGATGGGTGGGGATCCCTTTATTGGGGAAAGCAAATACATGGGTATGTTATTAGAAAAGAGATTGAATTTACTGCATTTCTGGGGACTGCATTGATAGATCTTTATGGGAAGATGGGTTACGTGAGAAGTGCCGAAAATGTTTTCAAGAAGATGGTAGTCACAGAAGTTTGTACTTGGAATGCAATGATTTCAGCTCTGTCTTTGAATGGTAAGGAGCGGGAGGCTTTGGACTTGTTTGAAAAAATGAAGAGAGAAAGGTTGCAGCCTAATGCAGTTACATTTGTCGCAGTTCTTACAGCTTGTGCTCGTGGAAAGCTGGTGAATTTTGGTCTGGAGTTGTTTAGATCAATGTCCAATGACTTTGGGGTTGAACCAATAATGGAACACTACGGGTGTGTGGTTGACCTCCTGGGCAGAGCAGGCCTATTTTTGGAGGCAACTGAGCTTATCAAGAGCATGCCTTTTGAGCCTGATGCTTCTGTATTGGGGGCTCTTTTGGGTTCTTGTAAGATTCATGGGACCGCCGAGCTGGGAAATAAAGTTGGGCAGAAACTGCTTGAGTTGCAGCCACAGCATTGTGGACGATACGTGGTTTTGTCAAGCATTAATGCTGGGACAGAGAGATGGGATCGTGCTGCTGCTGTGAGGCAAGCAATGGTGCATGCTGGAATTCGGAAAATTCCAGCCTACAGTGTAATTGATGTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

474

Amino Acids

52.24

Weight (kDa)

8.89

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10330
fragaria_vesca	FvH4_6g42841
malus_domestica	MD09G1072300.v1.1
prunus_persica	Prupe.3G214500_v2.0.a1
pyrus_communis	pycom09g03390 pycom09g03410 pycom09g03420 pycom17g09460
rosa_chinensis	RchiOBHm_Chr2g0158781
rosa_laevigata	RLG00000021112 RLG00000025824
rosa_multiflora	Rmu_sc0003664.1_g000002 Rmu_sc0003664.1_g000004 Rmu_sc0038467.1_g000001 Rmu_sc0038467.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091010
rosa_rugosa	Rorug02G0472600
rosa_samantha	Rh2BG550900 Rh2CG521400 Rh2DG560700
rosa_wichuraiana	Rw2G044540 Rw3G001550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	928
AccII	CGCG	1 cut(s)	320
AciI	CCGC	6 cut(s)	88, 251, 275, 288, 928, 1233
AclWI	GGATC	3 cut(s)	717, 730, 1347
AcsI	RAATTY	5 cut(s)	441, 776, 1033, 1380, 1389
AfaI	GTAC	2 cut(s)	467, 883
AfiI	CCNNNNNNNGG	5 cut(s)	313, 314, 732, 733, 1141
AgsI	TTSAA	7 cut(s)	141, 530, 776, 856, 916, 950, 1082
AjiI	CACGTC	1 cut(s)	550
AjnI	CCWGG	1 cut(s)	1119
AluBI	AGCT	9 cut(s)	132, 137, 390, 674, 905, 1010, 1027, 1156, 1240
AluI	AGCT	9 cut(s)	132, 137, 390, 674, 905, 1010, 1027, 1156, 1240
Alw21I	GWGCWC	1 cut(s)	1018
AlwI	GGATC	3 cut(s)	717, 730, 1347
AlwNI	CAGNNNCTG	1 cut(s)	1264
Ama87I	CYCGRG	1 cut(s)	20
AoxI	GGCC	1 cut(s)	1132
ApeKI	GCWGC	4 cut(s)	973, 1276, 1346, 1349
ApoI	RAATTY	5 cut(s)	441, 776, 1033, 1380, 1389
AscI	GGCGCGCC	1 cut(s)	318
AseI	ATTAAT	2 cut(s)	573, 1317
AspLEI	GCGC	2 cut(s)	320, 322
AspS9I	GGNCC	1 cut(s)	1230
AsuHPI	GGTGA	2 cut(s)	217, 1042
AvaI	CYCGRG	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	1230
BamHI	GGATCC	1 cut(s)	722
BanII	GRGCYC	2 cut(s)	184, 1204
BarI	GAAGNNNNNNTAC	2 cut(s)	812, 844
BauI	CACGAG	1 cut(s)	1017
Bbv12I	GWGCWC	1 cut(s)	1018
BbvI	GCAGC	4 cut(s)	985, 1288, 1333, 1336
BccI	CCATC	8 cut(s)	192, 476, 622, 640, 707, 817, 856, 1329
BciT130I	CCWGG	1 cut(s)	1121
BclI	TGATCA	1 cut(s)	174
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	1399
BglII	AGATCT	1 cut(s)	808
BisI	GCNGC	5 cut(s)	288, 974, 1277, 1347, 1350
BlpI	GCTNAGC	1 cut(s)	133
BlsI	GCNGC	5 cut(s)	289, 975, 1278, 1348, 1351
Bme1390I	CCNGG	1 cut(s)	1121
Bme18I	GGWCC	1 cut(s)	1230
BmeT110I	CYCGRG	1 cut(s)	20
BmgBI	CACGTC	1 cut(s)	550
BmgT120I	GGNCC	1 cut(s)	1230
BmiI	GGNNCC	2 cut(s)	724, 1231
BmrFI	CCNGG	1 cut(s)	1121
BmsI	GCATC	2 cut(s)	409, 1174
BplI	GAGNNNNNCTC	2 cut(s)	171, 203
BpmI	CTGGAG	1 cut(s)	1064
Bpu1102I	GCTNAGC	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	1289
BsaAI	YACGTR	2 cut(s)	832, 1300
BsaJI	CCNNGG	2 cut(s)	100, 1120
BsaXI	ACNNNNNCTCC	6 cut(s)	21, 51, 256, 286, 586, 616
Bsc4I	CCNNNNNNNGG	5 cut(s)	313, 314, 732, 733, 1141
Bse1I	ACTGG	1 cut(s)	36
Bse3DI	GCAATG	2 cut(s)	900, 1371
BseBI	CCWGG	1 cut(s)	1121
BseDI	CCNNGG	2 cut(s)	100, 1120
BseGI	GGATG	3 cut(s)	153, 508, 718
BseLI	CCNNNNNNNGG	5 cut(s)	313, 314, 732, 733, 1141
BseMI	GCAATG	2 cut(s)	900, 1371
BseMII	CTCAG	3 cut(s)	147, 413, 1143
BseNI	ACTGG	1 cut(s)	36
BsePI	GCGCGC	1 cut(s)	318
BseRI	GAGGAG	3 cut(s)	29, 101, 209
BseXI	GCAGC	4 cut(s)	985, 1288, 1333, 1336
BseYI	CCCAGC	2 cut(s)	1240, 1322
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	1 cut(s)	1134
BsiHKAI	GWGCWC	1 cut(s)	1018
BsiHKCI	CYCGRG	1 cut(s)	20
BslFI	GGGAC	3 cut(s)	808, 1243, 1339
BslI	CCNNNNNNNGG	5 cut(s)	313, 314, 732, 733, 1141
BsmFI	GGGAC	3 cut(s)	808, 1243, 1339
BsmI	GAATGC	1 cut(s)	895
BsnI	GGCC	1 cut(s)	1134
BsoBI	CYCGRG	1 cut(s)	20
Bsp1286I	GDGCHC	3 cut(s)	184, 1018, 1204
Bsp143I	GATC	5 cut(s)	174, 722, 808, 1055, 1339
Bsp1720I	GCTNAGC	1 cut(s)	133
BspACI	CCGC	6 cut(s)	88, 251, 275, 288, 928, 1233
BspANI	GGCC	1 cut(s)	1134
BspCNI	CTCAG	3 cut(s)	146, 412, 1144
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	2 cut(s)	724, 1231
BspPI	GGATC	3 cut(s)	717, 730, 1347
BsrBI	CCGCTC	1 cut(s)	928
BsrDI	GCAATG	2 cut(s)	900, 1371
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	100, 1120
BssHII	GCGCGC	1 cut(s)	318
BssMI	GATC	5 cut(s)	174, 722, 808, 1055, 1339
BssSI	CACGAG	1 cut(s)	1017
Bst2BI	CACGAG	1 cut(s)	1017
Bst2UI	CCWGG	1 cut(s)	1121
Bst4CI	ACNGT	4 cut(s)	104, 453, 688, 1403
Bst6I	CTCTTC	3 cut(s)	227, 304, 953
BstAPI	GCANNNNNTGC	1 cut(s)	1264
BstBAI	YACGTR	2 cut(s)	832, 1300
BstC8I	GCNNGC	8 cut(s)	237, 320, 424, 536, 1132, 1169, 1362, 1374
BstDEI	CTNAG	3 cut(s)	133, 399, 1152
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	3 cut(s)	153, 508, 718
BstFNI	CGCG	1 cut(s)	320
BstHHI	GCGC	2 cut(s)	320, 322
BstKTI	GATC	5 cut(s)	177, 725, 811, 1058, 1342
BstMBI	GATC	5 cut(s)	174, 722, 808, 1055, 1339
BstMWI	GCNNNNNNNGC	8 cut(s)	245, 293, 470, 1131, 1177, 1264, 1273, 1282
BstNI	CCWGG	1 cut(s)	1121
BstNSI	RCATGY	4 cut(s)	235, 538, 1171, 1376
BstSCI	CCNGG	1 cut(s)	1119
BstSFI	CTRYAG	1 cut(s)	1399
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	4 cut(s)	985, 1288, 1333, 1336
BstX2I	RGATCY	2 cut(s)	722, 808
BstYI	RGATCY	2 cut(s)	722, 808
BsuRI	GGCC	1 cut(s)	1134
BtgI	CCRYGG	1 cut(s)	100
BtgZI	GCGATG	1 cut(s)	488
BtrI	CACGTC	1 cut(s)	550
BtsCI	GGATG	3 cut(s)	153, 508, 718
BtsIMutI	CAGTG	2 cut(s)	607, 1408
Cac8I	GCNNGC	8 cut(s)	237, 320, 424, 536, 1132, 1169, 1362, 1374
CaiI	CAGNNNCTG	1 cut(s)	1264
CfoI	GCGC	2 cut(s)	320, 322
Cfr13I	GGNCC	1 cut(s)	1230
Csp6I	GTAC	2 cut(s)	466, 882
CviAII	CATG	9 cut(s)	232, 359, 535, 635, 699, 749, 1168, 1226, 1373
CviQI	GTAC	2 cut(s)	466, 882
DdeI	CTNAG	3 cut(s)	133, 399, 1152
DpnI	GATC	5 cut(s)	176, 724, 810, 1057, 1341
DpnII	GATC	5 cut(s)	174, 722, 808, 1055, 1339
Eam1104I	CTCTTC	3 cut(s)	227, 304, 953
EarI	CTCTTC	3 cut(s)	227, 304, 953
Eco147I	AGGCCT	1 cut(s)	1134
Eco24I	GRGCYC	2 cut(s)	184, 1204
Eco47I	GGWCC	1 cut(s)	1230
Eco88I	CYCGRG	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	1380
EcoRII	CCWGG	1 cut(s)	1119
EcoT38I	GRGCYC	2 cut(s)	184, 1204
FaeI	CATG	9 cut(s)	235, 362, 538, 638, 702, 752, 1171, 1229, 1376
FaqI	GGGAC	3 cut(s)	808, 1243, 1339
FatI	CATG	9 cut(s)	231, 358, 534, 634, 698, 748, 1167, 1225, 1372
FauI	CCCGC	3 cut(s)	95, 258, 921
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	5 cut(s)	288, 974, 1277, 1347, 1350
FokI	GGATG	3 cut(s)	160, 515, 725
FriOI	GRGCYC	2 cut(s)	184, 1204
Fsp4HI	GCNGC	5 cut(s)	288, 974, 1277, 1347, 1350
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	2 cut(s)	319, 321
GluI	GCNGC	5 cut(s)	288, 974, 1277, 1347, 1350
GsaI	CCCAGC	2 cut(s)	1244, 1326
GsuI	CTGGAG	1 cut(s)	1064
HaeIII	GGCC	1 cut(s)	1134
HhaI	GCGC	2 cut(s)	320, 322
Hin1II	CATG	9 cut(s)	235, 362, 538, 638, 702, 752, 1171, 1229, 1376
Hin6I	GCGC	2 cut(s)	318, 320
HinP1I	GCGC	2 cut(s)	318, 320
HincII	GTYRAC	1 cut(s)	1114
HindII	GTYRAC	1 cut(s)	1114
HinfI	GANTC	3 cut(s)	362, 610, 1222
HphI	GGTGA	2 cut(s)	217, 1042
Hpy166II	GTNNAC	4 cut(s)	29, 561, 1114, 1292
Hpy188I	TCNGA	3 cut(s)	179, 448, 1386
Hpy188III	TCNNGA	5 cut(s)	20, 583, 856, 1043, 1162
Hpy8I	GTNNAC	4 cut(s)	29, 561, 1114, 1292
HpyAV	CCTTC	3 cut(s)	277, 335, 538
HpyCH4III	ACNGT	4 cut(s)	104, 453, 688, 1403
HpyCH4IV	ACGT	4 cut(s)	7, 549, 831, 1299
HpyCH4V	TGCA	9 cut(s)	358, 634, 785, 800, 893, 973, 983, 1276, 1372
HpyF10VI	GCNNNNNNNGC	8 cut(s)	245, 293, 470, 1131, 1177, 1264, 1273, 1282
HpyF3I	CTNAG	3 cut(s)	133, 399, 1152
HpySE526I	ACGT	4 cut(s)	7, 549, 831, 1299
Hsp92II	CATG	9 cut(s)	235, 362, 538, 638, 702, 752, 1171, 1229, 1376
HspAI	GCGC	2 cut(s)	318, 320
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	5 cut(s)	174, 722, 808, 1055, 1339
LmnI	GCTCC	1 cut(s)	925
Lsp1109I	GCAGC	4 cut(s)	985, 1288, 1333, 1336
LweI	GCATC	2 cut(s)	409, 1174
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	4 cut(s)	7, 549, 831, 1299
MaeIII	GTNAC	4 cut(s)	682, 827, 868, 985
MalI	GATC	5 cut(s)	176, 724, 810, 1057, 1341
MbiI	CCGCTC	1 cut(s)	928
MboI	GATC	5 cut(s)	174, 722, 808, 1055, 1339
MboII	GAAGA	7 cut(s)	214, 291, 505, 687, 832, 871, 970
MflI	RGATCY	2 cut(s)	722, 808
MhlI	GDGCHC	3 cut(s)	184, 1018, 1204
MluCI	AATT	8 cut(s)	310, 441, 706, 776, 1033, 1380, 1389, 1407
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	67
MseI	TTAA	3 cut(s)	573, 621, 1317
MslI	CAYNNNNRTG	2 cut(s)	230, 753
MspR9I	CCNGG	1 cut(s)	1121
Mva1269I	GAATGC	1 cut(s)	895
MvaI	CCWGG	1 cut(s)	1121
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	8 cut(s)	245, 293, 470, 1131, 1177, 1264, 1273, 1282
NdeII	GATC	5 cut(s)	174, 722, 808, 1055, 1339
NlaIII	CATG	9 cut(s)	235, 362, 538, 638, 702, 752, 1171, 1229, 1376
NlaIV	GGNNCC	2 cut(s)	724, 1231
NmeAIII	GCCGAG	1 cut(s)	1261
NmuCI	GTSAC	1 cut(s)	868
NspI	RCATGY	4 cut(s)	235, 538, 1171, 1376
PaeI	GCATGC	3 cut(s)	538, 1171, 1376
PalAI	GGCGCGCC	1 cut(s)	318
PauI	GCGCGC	1 cut(s)	318
PceI	AGGCCT	1 cut(s)	1134
PctI	GAATGC	1 cut(s)	895
PfeI	GAWTC	2 cut(s)	610, 1222
PkrI	GCNGC	5 cut(s)	289, 975, 1278, 1348, 1351
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Ppu21I	YACGTR	2 cut(s)	832, 1300
PshBI	ATTAAT	2 cut(s)	573, 1317
Psp6I	CCWGG	1 cut(s)	1119
PspFI	CCCAGC	2 cut(s)	1240, 1322
PspGI	CCWGG	1 cut(s)	1119
PspN4I	GGNNCC	2 cut(s)	724, 1231
PspPI	GGNCC	1 cut(s)	1230
PstNI	CAGNNNCTG	1 cut(s)	1264
PsuI	RGATCY	2 cut(s)	722, 808
PteI	GCGCGC	1 cut(s)	318
RsaI	GTAC	2 cut(s)	467, 883
RsaNI	GTAC	2 cut(s)	466, 882
RseI	CAYNNNNRTG	2 cut(s)	230, 753
SaqAI	TTAA	3 cut(s)	573, 621, 1317
SatI	GCNGC	5 cut(s)	288, 974, 1277, 1347, 1350
Sau3AI	GATC	5 cut(s)	174, 722, 808, 1055, 1339
Sau96I	GGNCC	1 cut(s)	1230
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	1121
SduI	GDGCHC	3 cut(s)	184, 1018, 1204
SfaNI	GCATC	2 cut(s)	409, 1174
SfcI	CTRYAG	1 cut(s)	1399
SgsI	GGCGCGCC	1 cut(s)	318
SinI	GGWCC	1 cut(s)	1230
SmiMI	CAYNNNNRTG	2 cut(s)	230, 753
SmlI	CTYRAG	1 cut(s)	1268
SmoI	CTYRAG	1 cut(s)	1268
SphI	GCATGC	3 cut(s)	538, 1171, 1376
Sse9I	AATT	8 cut(s)	310, 441, 706, 776, 1033, 1380, 1389, 1407
SseBI	AGGCCT	1 cut(s)	1134
SsiI	CCGC	6 cut(s)	88, 251, 275, 288, 928, 1233
SspMI	CTAG	1 cut(s)	129
StuI	AGGCCT	1 cut(s)	1134
StyD4I	CCNGG	1 cut(s)	1119
TaaI	ACNGT	4 cut(s)	104, 453, 688, 1403
TaiI	ACGT	4 cut(s)	10, 552, 834, 1302
TasI	AATT	8 cut(s)	310, 441, 706, 776, 1033, 1380, 1389, 1407
TatI	WGTACW	1 cut(s)	881
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	2 cut(s)	610, 1222
Tru1I	TTAA	3 cut(s)	573, 621, 1317
Tru9I	TTAA	3 cut(s)	573, 621, 1317
TscAI	CASTG	2 cut(s)	607, 1408
TseFI	GTSAC	1 cut(s)	868
TseI	GCWGC	4 cut(s)	973, 1276, 1346, 1349
Tsp45I	GTSAC	1 cut(s)	868
TspDTI	ATGAA	5 cut(s)	317, 684, 687, 971, 1214
TspRI	CASTG	2 cut(s)	607, 1408
VpaK11BI	GGWCC	1 cut(s)	1230
VspI	ATTAAT	2 cut(s)	573, 1317
XapI	RAATTY	5 cut(s)	441, 776, 1033, 1380, 1389
XceI	RCATGY	4 cut(s)	235, 538, 1171, 1376
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.