Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038467.1

Orthogroup ID

OG0009495

Physical Location & Seq

Genomic Coordinates Reverse (-)

1321 .. 1629

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038467.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgctggagtctttgcttcagctcctccaacgcttcctgaaaagcccaaaccaaatcaaacaaatccattcccgcctaatcaccaacggtcatctccgtcgtaacccaaaccctaaattttcaaaatggaggacaaccctattctacaacactctgatcagagcccacctcggtttcggcgaagcgcacaaggctttttttctctttgcccagatgctttcccaccaagcccaccccaacagccacacattccctccgctcgtcaaagccgtcgccgtcgccgtcgccggcggcgctggctggcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

102

Amino Acids

11.6

Weight (kDa)

11.74

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10330
fragaria_vesca	FvH4_6g42841
malus_domestica	MD09G1072300.v1.1
prunus_persica	Prupe.3G214500_v2.0.a1
pyrus_communis	pycom09g03390 pycom09g03410 pycom09g03420 pycom17g09460
rosa_chinensis	RchiOBHm_Chr2g0158781
rosa_laevigata	RLG00000021112 RLG00000025824
rosa_multiflora	Rmu_sc0003664.1_g000002 Rmu_sc0003664.1_g000004 Rmu_sc0038467.1_g000001 Rmu_sc0038467.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091010
rosa_rugosa	Rorug02G0472600
rosa_samantha	Rh2BG550900 Rh2CG521400 Rh2DG560700
rosa_wichuraiana	Rw2G044540 Rw3G001550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	259
AciI	CCGC	3 cut(s)	73, 257, 291
AcsI	RAATTY	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	123
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	116
AspLEI	GCGC	2 cut(s)	187, 296
AsuHPI	GGTGA	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	166
BceAI	ACGGC	3 cut(s)	254, 260, 266
BclI	TGATCA	1 cut(s)	156
BfoI	RGCGCY	1 cut(s)	297
BisI	GCNGC	1 cut(s)	292
BlsI	GCNGC	1 cut(s)	293
BmsI	GCATC	1 cut(s)	204
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
BpmI	CTGGAG	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bse118I	RCCGGY	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	156
BspACI	CCGC	3 cut(s)	73, 257, 291
BsrBI	CCGCTC	1 cut(s)	259
BsrFI	RCCGGY	1 cut(s)	287
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	89
BstC8I	GCNNGC	3 cut(s)	289, 298, 302
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	2 cut(s)	187, 296
BstKTI	GATC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 293, 297
Cac8I	GCNNGC	3 cut(s)	289, 298, 302
CfoI	GCGC	2 cut(s)	187, 296
Cfr10I	RCCGGY	1 cut(s)	287
CviJI	RGCY	8 cut(s)	22, 45, 164, 194, 230, 243, 269, 300
CviKI_1	RGCY	8 cut(s)	22, 45, 164, 194, 230, 243, 269, 300
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	166
FauI	CCCGC	1 cut(s)	80
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	292
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	292
GlaI	GCGC	2 cut(s)	186, 295
GluI	GCNGC	1 cut(s)	292
GsuI	CTGGAG	1 cut(s)	26
HaeII	RGCGCY	1 cut(s)	297
HapII	CCGG	1 cut(s)	288
HhaI	GCGC	2 cut(s)	187, 296
Hin6I	GCGC	2 cut(s)	185, 294
HinP1I	GCGC	2 cut(s)	185, 294
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	156, 161
Hpy188III	TCNNGA	1 cut(s)	37
Hpy99I	CGWCG	4 cut(s)	102, 275, 281, 287
HpyCH4III	ACNGT	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 293, 297
HspAI	GCGC	2 cut(s)	185, 294
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	5 cut(s)	50, 224, 282, 286, 301
LweI	GCATC	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	158
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	4 cut(s)	35, 123, 179, 264
MreI	CGCCGGCG	1 cut(s)	287
MroNI	GCCGGC	1 cut(s)	287
MspI	CCGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	191, 293, 297
NaeI	GCCGGC	1 cut(s)	289
NdeII	GATC	1 cut(s)	156
NgoMIV	GCCGGC	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	3 cut(s)	177, 267, 279
PdiI	GCCGGC	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	293
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
SatI	GCNGC	1 cut(s)	292
Sau3AI	GATC	1 cut(s)	156
SchI	GAGTC	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	2 cut(s)	24, 171
SfaNI	GCATC	1 cut(s)	204
SgeI	CNNG	9 cut(s)	17, 49, 84, 182, 202, 223, 239, 272, 300
SgrAI	CRCCGGYG	1 cut(s)	287
Sse9I	AATT	1 cut(s)	116
SsiI	CCGC	3 cut(s)	73, 257, 291
TaaI	ACNGT	1 cut(s)	89
TasI	AATT	1 cut(s)	116
TauI	GCSGC	1 cut(s)	294
TspGWI	ACGGA	1 cut(s)	86
XapI	RAATTY	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.