Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009495

Physical Location & Seq

Genomic Coordinates Forward (+)

2537407 .. 2538200

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g03420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGATTTCTGCACTTTCTTTGAATGGTAAAGAGAAGGAGGCTTTGGACTTGTTTGAAAAAATGAAGATCGAGAGGTTGCAGCCTAATGGGGTTACATTTGTCGCAGTTCTTACAGCATGTGCTCGTGGAAAACTGGTGAAGTTTGGTTCGGAATTGTTTAGATCAATGACCGATGATTTTGGAGTTGAGCCGACAATGGAACACTACGGGTGTGTGGTTGACCTCTTGGGCAGAGCAGGGCTGTTTTGGGAGGCAACTGAAGTTATTAAGGGCATGGCTTTCGAGCCTGATGCCTCTGTATTGGGGGCTCTTTTAGGTTCTTGTAAGATTCATGGGACTGCTGAGCTGGGAAATGAAGTTGGTGAGAAACTTCTCGAGTTGCAGCCACAACACTGTGGACGATACGTGGTTTTGTCAAACATTAATGCTGGGAAGGAGAGATGGGATCTTGCTGCAGCTGTGAGGAAAACAATGGTGGATGCCGGAATTCGGAAAATTCCGGCCTACAGTATGATTGATAGCCAGTGGCACGAAACGAACCACTGCCGTAACCTGTCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

188

Amino Acids

20.62

Weight (kDa)

5.97

Isoelectric Point (pI)

30.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10330
fragaria_vesca	FvH4_6g42841
malus_domestica	MD09G1072300.v1.1
prunus_persica	Prupe.3G214500_v2.0.a1
pyrus_communis	pycom09g03390 pycom09g03410 pycom09g03420 pycom17g09460
rosa_chinensis	RchiOBHm_Chr2g0158781
rosa_laevigata	RLG00000021112 RLG00000025824
rosa_multiflora	Rmu_sc0003664.1_g000002 Rmu_sc0003664.1_g000004 Rmu_sc0038467.1_g000001 Rmu_sc0038467.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091010
rosa_rugosa	Rorug02G0472600
rosa_samantha	Rh2BG550900 Rh2CG521400 Rh2DG560700
rosa_wichuraiana	Rw2G044540 Rw3G001550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	453
AcsI	RAATTY	2 cut(s)	486, 495
AcuI	CTGAAG	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	489
AgsI	TTSAA	2 cut(s)	22, 56
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	2 cut(s)	346, 458
AluI	AGCT	2 cut(s)	346, 458
Alw21I	GWGCWC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	453
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	1 cut(s)	501
ApeKI	GCWGC	4 cut(s)	79, 382, 452, 455
ApoI	RAATTY	2 cut(s)	486, 495
AseI	ATTAAT	1 cut(s)	423
AsuHPI	GGTGA	2 cut(s)	148, 374
AvaI	CYCGRG	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	310
BauI	CACGAG	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	4 cut(s)	91, 394, 439, 467
BccI	CCATC	1 cut(s)	435
BceAI	ACGGC	1 cut(s)	531
BcgI	CGANNNNNNTGC	4 cut(s)	262, 272, 296, 306
BfmI	CTRYAG	2 cut(s)	453, 505
BisI	GCNGC	4 cut(s)	80, 383, 453, 456
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	4 cut(s)	81, 384, 454, 457
BmeT110I	CYCGRG	1 cut(s)	374
BmsI	GCATC	2 cut(s)	280, 469
Bpu1102I	GCTNAGC	1 cut(s)	342
BsaAI	YACGTR	1 cut(s)	406
Bsc4I	CCNNNNNNNGG	1 cut(s)	489
Bse1I	ACTGG	2 cut(s)	138, 523
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	2 cut(s)	138, 523
BseXI	GCAGC	4 cut(s)	91, 394, 439, 467
BseYI	CCCAGC	2 cut(s)	346, 428
BshFI	GGCC	1 cut(s)	503
BsiHKAI	GWGCWC	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	2 cut(s)	483, 500
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	503
BsoBI	CYCGRG	1 cut(s)	374
Bsp1286I	GDGCHC	2 cut(s)	124, 310
Bsp143I	GATC	3 cut(s)	66, 161, 445
Bsp1720I	GCTNAGC	1 cut(s)	342
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	1 cut(s)	334
BspMAI	CTGCAG	1 cut(s)	457
BspPI	GGATC	1 cut(s)	453
BsrI	ACTGG	2 cut(s)	138, 523
BssMI	GATC	3 cut(s)	66, 161, 445
BssSI	CACGAG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	395, 509
BstBAI	YACGTR	1 cut(s)	406
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	3 cut(s)	69, 164, 448
BstMBI	GATC	3 cut(s)	66, 161, 445
BstNSI	RCATGY	1 cut(s)	120
BstSFI	CTRYAG	2 cut(s)	453, 505
BstV1I	GCAGC	4 cut(s)	91, 394, 439, 467
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	503
BtsCI	GGATG	1 cut(s)	484
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	3 cut(s)	391, 530, 541
CviAII	CATG	3 cut(s)	117, 274, 332
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	3 cut(s)	68, 163, 447
DpnII	GATC	3 cut(s)	66, 161, 445
Eco24I	GRGCYC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	374
EcoRI	GAATTC	1 cut(s)	486
EcoT38I	GRGCYC	1 cut(s)	310
FaeI	CATG	3 cut(s)	120, 277, 335
FaiI	YATR	4 cut(s)	118, 275, 333, 512
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	3 cut(s)	116, 273, 331
Fnu4HI	GCNGC	4 cut(s)	80, 383, 453, 456
FokI	GGATG	1 cut(s)	491
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	4 cut(s)	80, 383, 453, 456
GluI	GCNGC	4 cut(s)	80, 383, 453, 456
GsaI	CCCAGC	2 cut(s)	350, 432
HaeIII	GGCC	1 cut(s)	503
HapII	CCGG	2 cut(s)	483, 500
Hin1II	CATG	3 cut(s)	120, 277, 335
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	328
HpaII	CCGG	2 cut(s)	483, 500
HphI	GGTGA	2 cut(s)	148, 374
Hpy166II	GTNNAC	2 cut(s)	220, 398
Hpy188I	TCNGA	2 cut(s)	151, 492
Hpy188III	TCNNGA	2 cut(s)	70, 374
Hpy8I	GTNNAC	2 cut(s)	220, 398
HpyAV	CCTTC	2 cut(s)	28, 427
HpyCH4III	ACNGT	2 cut(s)	395, 509
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	4 cut(s)	11, 79, 382, 455
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	120, 277, 335
Kzo9I	GATC	3 cut(s)	66, 161, 445
LpnPI	CCDG	8 cut(s)	119, 222, 300, 332, 414, 496, 513, 536
Lsp1109I	GCAGC	4 cut(s)	91, 394, 439, 467
LweI	GCATC	2 cut(s)	280, 469
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	2 cut(s)	91, 548
MalI	GATC	3 cut(s)	68, 163, 447
MboI	GATC	3 cut(s)	66, 161, 445
MboII	GAAGA	1 cut(s)	76
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	2 cut(s)	124, 310
MluCI	AATT	3 cut(s)	152, 486, 495
MnlI	CCTC	6 cut(s)	31, 66, 233, 244, 304, 456
MseI	TTAA	2 cut(s)	267, 423
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	2 cut(s)	483, 500
NdeII	GATC	3 cut(s)	66, 161, 445
NlaIII	CATG	3 cut(s)	120, 277, 335
NspI	RCATGY	1 cut(s)	120
PaeR7I	CTCGAG	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	328
PkrI	GCNGC	4 cut(s)	81, 384, 454, 457
Ppu21I	YACGTR	1 cut(s)	406
PshBI	ATTAAT	1 cut(s)	423
PspFI	CCCAGC	2 cut(s)	346, 428
PstI	CTGCAG	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	445
PvuII	CAGCTG	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	267, 423
SatI	GCNGC	4 cut(s)	80, 383, 453, 456
Sau3AI	GATC	3 cut(s)	66, 161, 445
SduI	GDGCHC	2 cut(s)	124, 310
SetI	ASST	7 cut(s)	77, 225, 319, 348, 408, 460, 555
SfaNI	GCATC	2 cut(s)	280, 469
SfcI	CTRYAG	2 cut(s)	453, 505
Sfr274I	CTCGAG	1 cut(s)	374
SlaI	CTCGAG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	3 cut(s)	152, 486, 495
TaaI	ACNGT	2 cut(s)	395, 509
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	3 cut(s)	69, 282, 375
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	3 cut(s)	152, 486, 495
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	2 cut(s)	267, 423
Tru9I	TTAA	2 cut(s)	267, 423
TscAI	CASTG	3 cut(s)	398, 530, 548
TseI	GCWGC	4 cut(s)	79, 382, 452, 455
TspDTI	ATGAA	3 cut(s)	77, 320, 369
TspRI	CASTG	3 cut(s)	398, 530, 548
VspI	ATTAAT	1 cut(s)	423
XapI	RAATTY	2 cut(s)	486, 495
XceI	RCATGY	1 cut(s)	120
XhoI	CTCGAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.