Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G10330 |
| fragaria_vesca | FvH4_6g42841 |
| malus_domestica | MD09G1072300.v1.1 |
| prunus_persica | Prupe.3G214500_v2.0.a1 |
| pyrus_communis | pycom09g03390 pycom09g03410 pycom09g03420 pycom17g09460 |
| rosa_chinensis | RchiOBHm_Chr2g0158781 |
| rosa_laevigata | RLG00000021112 RLG00000025824 |
| rosa_multiflora | Rmu_sc0003664.1_g000002 Rmu_sc0003664.1_g000004 Rmu_sc0038467.1_g000001 Rmu_sc0038467.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00091010 |
| rosa_rugosa | Rorug02G0472600 |
| rosa_samantha | Rh2BG550900 Rh2CG521400 Rh2DG560700 |
| rosa_wichuraiana | Rw2G044540 Rw3G001550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 349 |
| AclWI | GGATC | 3 cut(s) | 106, 192, 723 |
| AcoI | YGGCCR | 1 cut(s) | 350 |
| AcsI | RAATTY | 4 cut(s) | 120, 400, 756, 765 |
| AfaI | GTAC | 2 cut(s) | 259, 747 |
| AfeI | AGCGCT | 1 cut(s) | 282 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 780 |
| AflII | CTTAAG | 1 cut(s) | 536 |
| AgsI | TTSAA | 3 cut(s) | 292, 458, 770 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 296, 328, 401, 433 |
| AluBI | AGCT | 3 cut(s) | 50, 386, 616 |
| AluI | AGCT | 3 cut(s) | 50, 386, 616 |
| Alw21I | GWGCWC | 1 cut(s) | 394 |
| AlwI | GGATC | 3 cut(s) | 106, 192, 723 |
| Aor51HI | AGCGCT | 1 cut(s) | 282 |
| AoxI | GGCC | 1 cut(s) | 350 |
| ApeKI | GCWGC | 3 cut(s) | 652, 698, 722 |
| ApoI | RAATTY | 4 cut(s) | 120, 400, 756, 765 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 227 |
| AspLEI | GCGC | 1 cut(s) | 283 |
| AspS9I | GGNCC | 1 cut(s) | 606 |
| AsuHPI | GGTGA | 1 cut(s) | 418 |
| AvaII | GGWCC | 1 cut(s) | 606 |
| BanII | GRGCYC | 1 cut(s) | 580 |
| Bbv12I | GWGCWC | 1 cut(s) | 394 |
| BbvI | GCAGC | 3 cut(s) | 664, 685, 709 |
| BccI | CCATC | 2 cut(s) | 83, 328 |
| BfoI | RGCGCY | 1 cut(s) | 284 |
| BfrI | CTTAAG | 1 cut(s) | 536 |
| BisI | GCNGC | 4 cut(s) | 350, 653, 699, 723 |
| BlsI | GCNGC | 4 cut(s) | 351, 654, 700, 724 |
| Bme18I | GGWCC | 1 cut(s) | 606 |
| BmgT120I | GGNCC | 1 cut(s) | 606 |
| BmiI | GGNNCC | 1 cut(s) | 607 |
| BmsI | GCATC | 1 cut(s) | 550 |
| BsaJI | CCNNGG | 2 cut(s) | 441, 496 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 780 |
| Bse3DI | GCAATG | 2 cut(s) | 276, 747 |
| BseDI | CCNNGG | 2 cut(s) | 441, 496 |
| BseGI | GGATG | 2 cut(s) | 22, 94 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 780 |
| BseMI | GCAATG | 2 cut(s) | 276, 747 |
| BseMII | CTCAG | 2 cut(s) | 291, 603 |
| BseRI | GAGGAG | 1 cut(s) | 485 |
| BseX3I | CGGCCG | 1 cut(s) | 350 |
| BseXI | GCAGC | 3 cut(s) | 664, 685, 709 |
| BseYI | CCCAGC | 1 cut(s) | 616 |
| BsgI | GTGCAG | 1 cut(s) | 170 |
| Bsh1285I | CGRYCG | 1 cut(s) | 353 |
| BshFI | GGCC | 1 cut(s) | 352 |
| BsiEI | CGRYCG | 1 cut(s) | 353 |
| BsiHKAI | GWGCWC | 1 cut(s) | 394 |
| BslFI | GGGAC | 2 cut(s) | 184, 619 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 780 |
| BsmFI | GGGAC | 2 cut(s) | 184, 619 |
| BsnI | GGCC | 1 cut(s) | 352 |
| Bsp1286I | GDGCHC | 2 cut(s) | 394, 580 |
| Bsp1407I | TGTACA | 1 cut(s) | 257 |
| Bsp143I | GATC | 5 cut(s) | 98, 184, 273, 490, 715 |
| BspACI | CCGC | 1 cut(s) | 349 |
| BspANI | GGCC | 1 cut(s) | 352 |
| BspCNI | CTCAG | 2 cut(s) | 290, 604 |
| BspLI | GGNNCC | 1 cut(s) | 607 |
| BspPI | GGATC | 3 cut(s) | 106, 192, 723 |
| BspTI | CTTAAG | 1 cut(s) | 536 |
| BsrDI | GCAATG | 2 cut(s) | 276, 747 |
| BsrGI | TGTACA | 1 cut(s) | 257 |
| BssECI | CCNNGG | 2 cut(s) | 441, 496 |
| BssMI | GATC | 5 cut(s) | 98, 184, 273, 490, 715 |
| BssT1I | CCWWGG | 1 cut(s) | 441 |
| BstAFI | CTTAAG | 1 cut(s) | 536 |
| BstAUI | TGTACA | 1 cut(s) | 257 |
| BstDEI | CTNAG | 2 cut(s) | 277, 612 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 778 |
| BstF5I | GGATG | 2 cut(s) | 22, 94 |
| BstH2I | RGCGCY | 1 cut(s) | 284 |
| BstHHI | GCGC | 1 cut(s) | 283 |
| BstKTI | GATC | 5 cut(s) | 101, 187, 276, 493, 718 |
| BstMBI | GATC | 5 cut(s) | 98, 184, 273, 490, 715 |
| BstMCI | CGRYCG | 1 cut(s) | 353 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 553, 658 |
| BstNSI | RCATGY | 3 cut(s) | 134, 547, 752 |
| BstV1I | GCAGC | 3 cut(s) | 664, 685, 709 |
| BstX2I | RGATCY | 2 cut(s) | 98, 184 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 616 |
| BstYI | RGATCY | 2 cut(s) | 98, 184 |
| BstZI | CGGCCG | 1 cut(s) | 350 |
| BsuRI | GGCC | 1 cut(s) | 352 |
| BtsCI | GGATG | 2 cut(s) | 22, 94 |
| BtsIMutI | CAGTG | 1 cut(s) | 609 |
| CfoI | GCGC | 1 cut(s) | 283 |
| Cfr13I | GGNCC | 1 cut(s) | 606 |
| Csp6I | GTAC | 2 cut(s) | 258, 746 |
| CviAII | CATG | 9 cut(s) | 75, 125, 131, 261, 395, 544, 602, 719, 749 |
| CviQI | GTAC | 2 cut(s) | 258, 746 |
| DdeI | CTNAG | 2 cut(s) | 277, 612 |
| DpnI | GATC | 5 cut(s) | 100, 186, 275, 492, 717 |
| DpnII | GATC | 5 cut(s) | 98, 184, 273, 490, 715 |
| DraI | TTTAAA | 1 cut(s) | 430 |
| EaeI | YGGCCR | 1 cut(s) | 350 |
| EagI | CGGCCG | 1 cut(s) | 350 |
| EclXI | CGGCCG | 1 cut(s) | 350 |
| Eco130I | CCWWGG | 1 cut(s) | 441 |
| Eco24I | GRGCYC | 1 cut(s) | 580 |
| Eco47I | GGWCC | 1 cut(s) | 606 |
| Eco47III | AGCGCT | 1 cut(s) | 282 |
| Eco52I | CGGCCG | 1 cut(s) | 350 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 778 |
| EcoRI | GAATTC | 2 cut(s) | 400, 756 |
| EcoT14I | CCWWGG | 1 cut(s) | 441 |
| EcoT38I | GRGCYC | 1 cut(s) | 580 |
| ErhI | CCWWGG | 1 cut(s) | 441 |
| FaeI | CATG | 9 cut(s) | 78, 128, 134, 264, 398, 547, 605, 722, 752 |
| FaqI | GGGAC | 2 cut(s) | 184, 619 |
| FatI | CATG | 9 cut(s) | 74, 124, 130, 260, 394, 543, 601, 718, 748 |
| Fnu4HI | GCNGC | 4 cut(s) | 350, 653, 699, 723 |
| FokI | GGATG | 2 cut(s) | 29, 101 |
| FriOI | GRGCYC | 1 cut(s) | 580 |
| Fsp4HI | GCNGC | 4 cut(s) | 350, 653, 699, 723 |
| GlaI | GCGC | 1 cut(s) | 282 |
| GluI | GCNGC | 4 cut(s) | 350, 653, 699, 723 |
| GsaI | CCCAGC | 1 cut(s) | 620 |
| HaeII | RGCGCY | 1 cut(s) | 284 |
| HaeIII | GGCC | 1 cut(s) | 352 |
| HhaI | GCGC | 1 cut(s) | 283 |
| Hin1II | CATG | 9 cut(s) | 78, 128, 134, 264, 398, 547, 605, 722, 752 |
| Hin6I | GCGC | 1 cut(s) | 281 |
| HinP1I | GCGC | 1 cut(s) | 281 |
| HinfI | GANTC | 1 cut(s) | 598 |
| HphI | GGTGA | 1 cut(s) | 418 |
| Hpy166II | GTNNAC | 1 cut(s) | 668 |
| Hpy188I | TCNGA | 1 cut(s) | 762 |
| Hpy8I | GTNNAC | 1 cut(s) | 668 |
| HpyAV | CCTTC | 1 cut(s) | 298 |
| HpyCH4IV | ACGT | 2 cut(s) | 789, 803 |
| HpyCH4V | TGCA | 4 cut(s) | 151, 176, 374, 652 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 553, 658 |
| HpyF3I | CTNAG | 2 cut(s) | 277, 612 |
| HpySE526I | ACGT | 2 cut(s) | 789, 803 |
| Hsp92II | CATG | 9 cut(s) | 78, 128, 134, 264, 398, 547, 605, 722, 752 |
| HspAI | GCGC | 1 cut(s) | 281 |
| Kzo9I | GATC | 5 cut(s) | 98, 184, 273, 490, 715 |
| LpnPI | CCDG | 4 cut(s) | 492, 570, 602, 738 |
| Lsp1109I | GCAGC | 3 cut(s) | 664, 685, 709 |
| LweI | GCATC | 1 cut(s) | 550 |
| MaeII | ACGT | 2 cut(s) | 789, 803 |
| MaeIII | GTNAC | 2 cut(s) | 361, 799 |
| MalI | GATC | 5 cut(s) | 100, 186, 275, 492, 717 |
| MboI | GATC | 5 cut(s) | 98, 184, 273, 490, 715 |
| MboII | GAAGA | 1 cut(s) | 63 |
| MflI | RGATCY | 2 cut(s) | 98, 184 |
| MhlI | GDGCHC | 2 cut(s) | 394, 580 |
| MluCI | AATT | 6 cut(s) | 82, 120, 400, 638, 756, 765 |
| MroXI | GAANNNNTTC | 1 cut(s) | 227 |
| MseI | TTAA | 4 cut(s) | 246, 429, 516, 537 |
| MslI | CAYNNNNRTG | 1 cut(s) | 129 |
| MspCI | CTTAAG | 1 cut(s) | 536 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 553, 658 |
| NdeII | GATC | 5 cut(s) | 98, 184, 273, 490, 715 |
| NlaIII | CATG | 9 cut(s) | 78, 128, 134, 264, 398, 547, 605, 722, 752 |
| NlaIV | GGNNCC | 1 cut(s) | 607 |
| NmeAIII | GCCGAG | 1 cut(s) | 477 |
| NmuCI | GTSAC | 1 cut(s) | 799 |
| NspI | RCATGY | 3 cut(s) | 134, 547, 752 |
| PdmI | GAANNNNTTC | 1 cut(s) | 227 |
| PfeI | GAWTC | 1 cut(s) | 598 |
| PkrI | GCNGC | 4 cut(s) | 351, 654, 700, 724 |
| PspFI | CCCAGC | 1 cut(s) | 616 |
| PspN4I | GGNNCC | 1 cut(s) | 607 |
| PspPI | GGNCC | 1 cut(s) | 606 |
| PsuI | RGATCY | 2 cut(s) | 98, 184 |
| RsaI | GTAC | 2 cut(s) | 259, 747 |
| RsaNI | GTAC | 2 cut(s) | 258, 746 |
| RseI | CAYNNNNRTG | 1 cut(s) | 129 |
| SaqAI | TTAA | 4 cut(s) | 246, 429, 516, 537 |
| SatI | GCNGC | 4 cut(s) | 350, 653, 699, 723 |
| Sau3AI | GATC | 5 cut(s) | 98, 184, 273, 490, 715 |
| Sau96I | GGNCC | 1 cut(s) | 606 |
| SduI | GDGCHC | 2 cut(s) | 394, 580 |
| SetI | ASST | 9 cut(s) | 52, 150, 347, 363, 388, 618, 713, 792, 806 |
| SfaNI | GCATC | 1 cut(s) | 550 |
| SinI | GGWCC | 1 cut(s) | 606 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 129 |
| SmlI | CTYRAG | 1 cut(s) | 536 |
| SmoI | CTYRAG | 1 cut(s) | 536 |
| Sse9I | AATT | 6 cut(s) | 82, 120, 400, 638, 756, 765 |
| SsiI | CCGC | 1 cut(s) | 349 |
| StyI | CCWWGG | 1 cut(s) | 441 |
| TaiI | ACGT | 2 cut(s) | 792, 806 |
| TaqI | TCGA | 1 cut(s) | 231 |
| TasI | AATT | 6 cut(s) | 82, 120, 400, 638, 756, 765 |
| TatI | WGTACW | 1 cut(s) | 257 |
| TauI | GCSGC | 1 cut(s) | 352 |
| TfiI | GAWTC | 1 cut(s) | 598 |
| Tru1I | TTAA | 4 cut(s) | 246, 429, 516, 537 |
| Tru9I | TTAA | 4 cut(s) | 246, 429, 516, 537 |
| TscAI | CASTG | 1 cut(s) | 616 |
| TseFI | GTSAC | 1 cut(s) | 799 |
| TseI | GCWGC | 3 cut(s) | 652, 698, 722 |
| Tsp45I | GTSAC | 1 cut(s) | 799 |
| TspDTI | ATGAA | 5 cut(s) | 60, 63, 113, 590, 639 |
| TspRI | CASTG | 1 cut(s) | 616 |
| Vha464I | CTTAAG | 1 cut(s) | 536 |
| VpaK11BI | GGWCC | 1 cut(s) | 606 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 778 |
| XapI | RAATTY | 4 cut(s) | 120, 400, 756, 765 |
| XceI | RCATGY | 3 cut(s) | 134, 547, 752 |
| XmnI | GAANNNNTTC | 1 cut(s) | 227 |