Rh2CG521400

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
69594598 .. 69596001
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG521400.1

Sequence Viewer

Length: 1404 bp
ATGCTGGAGTCTTTGCTTCAGCTCCTCCAACGCTTCCTGAAAACCCCAAACCAAATCAAACAAATCCATTCCCGCCTAATCACCAACGGTCATCTCTGTCGTAACCCAAACCCTAAATTTTCAAAATGGAGGACAACCCTATTCTACAACACTCTGATCAGAGCCCACCTCGGTTTCGGCGAAGCCCACAAGGCTTTTTTTCTCTTTACCCAGATGCTTTCCCACCAAGCCCACCCCAACAGCCACACATTCCCTCCGCTCGTCAAAGCCGTCGCCGGCAGTGGTGGCTGGCCGTGTTACGGCAGAGCCCTCCACGCCCAAGTTGCGAAACGCGGCGTTTGGGGTGACCCAGTTGTGCAGACGTCGTTTGTGAGCATGTATGCTCGGTTTGGTGAAGTGTGGGATGCACGTAAGGTGTTCGATGAAATGACTGAACCGTGTGTGGTTGCGTGCAATGCGATGATTGATGGGTTGGGGAAGAATGGGGACATGGGTGGTGCTATTTCGATGTTCGAAAGGATGCCGGAGAGGGACGTGGTTTCGTGGACGAGTGTGATTAGTGGGTTTGGGAGGAATGGGTGGTTTGGTGAGGGGGTTTGGTTTTTCAAGAGGATGATGGGGAGTGAGGATGTGAGGGGTGGTTTTGTGAAGCCAAATGAAGCTACTTTTGTTAGTGTGCTTTCTTCATGTGCTAATTTGGATGGGTGGGGATCTCTTTATTGGGGGAAGCAAATTCATGGGCATGTTGTTAGGAATGAGGTGCAGTTGAGTGTTTTTATGGGGACTGCATTGGTTGATCTTTATGGGAAGTCGGGTTGTTTGAGTGGTGCTTGGAATGTTTTCGAGGAAATGAGGGTTAAAGAAGTTTGTACATGGAACGCAATGATCTCAGCGCTTTCTTTGAATGGCAGGGAGAAGGAGGCTTTGGAGTTGTTTGAGAAAATGATGGAAAAGAGGTTGCGGCCGAATGAGGTTACATTTGTTGCAGTTCTCACAGCTTGTGCTCGTGGGAATTCGGTGAAGTGTGGTTTGGATTTGTTTAAATCAATGTCCAAGGAGTTTGGGGTTGAACCAATAATGGAGCACTATGGTTGTGTGGTTGATCTCCTAGGCAGAGCAGGACTTTTTAAGGAGGCAACTGAACTTCTTAAGAACATGCCTTTTGAGCCTGATGCTTCTGTGTTGGGGGCTCTTTTGGGTTCTTGTAAGATTCATGGGACCACTGAGCTGGGAAATGAAGTTGGGAAAAAATTGATTGAGTTGCAGCCACAGCATTGTGGACGATACTTGGTTTTGTCAAACATTTATGCTGCGAACGAGAGGTGGGATCATGCTGCTTCTGTGAGGAAAGCAATGGTACATGCTGGAATTCAGAAAATTCCGGCCTTTAGTAGGATTGACTAA

Protein Analysis

467

Amino Acids

52.02

Weight (kDa)

8.83

Isoelectric Point (pI)

30.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 46 - 90 1.8e-06 PPR repeat family
PPR_2 PF13041 146 - 178 8.9e-07 PPR repeat family
PPR PF01535 149 - 178 3.5e-07 PPR repeat
PPR PF01535 180 - 207 6e-06 PPR repeat
PPR_2 PF13041 289 - 336 1.4e-11 PPR repeat family
PPR_3 PF13812 289 - 334 1.9e-07 Pentatricopeptide repeat domain
PPR PF01535 291 - 319 3.8e-08 PPR repeat
E_motif PF20431 406 - 466 1.7e-11 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 259
AccII CGCG 1 cut(s) 333
AciI CCGC 4 cut(s) 73, 257, 333, 961
AclWI GGATC 2 cut(s) 718, 1335
AcoI YGGCCR 2 cut(s) 290, 962
AcsI RAATTY 5 cut(s) 116, 732, 1012, 1368, 1377
AcyI GRCGYC 1 cut(s) 362
AfaI GTAC 2 cut(s) 871, 1359
AfeI AGCGCT 1 cut(s) 894
AfiI CCNNNNNNNGG 2 cut(s) 299, 1392
AflII CTTAAG 1 cut(s) 1148
AgsI TTSAA 4 cut(s) 123, 607, 904, 1070
AjiI CACGTC 1 cut(s) 535
AjuI GAANNNNNNNTTGG 4 cut(s) 908, 940, 1013, 1045
AluBI AGCT 4 cut(s) 22, 662, 998, 1228
AluI AGCT 4 cut(s) 22, 662, 998, 1228
Alw21I GWGCWC 2 cut(s) 1006, 1086
AlwI GGATC 2 cut(s) 718, 1335
Aor51HI AGCGCT 1 cut(s) 894
AoxI GGCC 3 cut(s) 290, 962, 1383
ApeKI GCWGC 3 cut(s) 1264, 1310, 1334
ApoI RAATTY 5 cut(s) 116, 732, 1012, 1368, 1377
Asp700I GAANNNNTTC 1 cut(s) 839
AspA2I CCTAGG 1 cut(s) 1108
AspLEI GCGC 1 cut(s) 895
AspS9I GGNCC 1 cut(s) 1218
AsuHPI GGTGA 5 cut(s) 73, 356, 404, 599, 1030
AsuII TTCGAA 1 cut(s) 513
AvaII GGWCC 1 cut(s) 1218
AvrII CCTAGG 1 cut(s) 1108
BanII GRGCYC 3 cut(s) 166, 310, 1192
BauI CACGAG 1 cut(s) 1005
Bbv12I GWGCWC 2 cut(s) 1006, 1086
BbvI GCAGC 3 cut(s) 1276, 1297, 1321
BccI CCATC 4 cut(s) 461, 610, 695, 940
BceAI ACGGC 3 cut(s) 254, 277, 316
BclI TGATCA 1 cut(s) 156
BfaI CTAG 1 cut(s) 1109
BfoI RGCGCY 1 cut(s) 896
BfrI CTTAAG 1 cut(s) 1148
BglI GCCNNNNNGGC 1 cut(s) 191
BisI GCNGC 5 cut(s) 334, 962, 1265, 1311, 1335
BlnI CCTAGG 1 cut(s) 1108
BlsI GCNGC 5 cut(s) 335, 963, 1266, 1312, 1336
Bme18I GGWCC 1 cut(s) 1218
BmgBI CACGTC 1 cut(s) 535
BmgT120I GGNCC 1 cut(s) 1218
BmiI GGNNCC 1 cut(s) 1219
BmrI ACTGGG 1 cut(s) 344
BmsI GCATC 4 cut(s) 204, 394, 510, 1162
BmuI ACTGGG 1 cut(s) 344
BplI GAGNNNNNCTC 2 cut(s) 153, 185
BpmI CTGGAG 1 cut(s) 26
Bpu14I TTCGAA 1 cut(s) 513
BsaAI YACGTR 1 cut(s) 410
BsaHI GRCGYC 1 cut(s) 362
BsaJI CCNNGG 3 cut(s) 169, 1053, 1108
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 1392
Bse118I RCCGGY 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 350
Bse3DI GCAATG 3 cut(s) 460, 888, 1359
BseDI CCNNGG 3 cut(s) 169, 1053, 1108
BseGI GGATG 5 cut(s) 409, 525, 618, 634, 706
BseLI CCNNNNNNNGG 2 cut(s) 299, 1392
BseMI GCAATG 3 cut(s) 460, 888, 1359
BseMII CTCAG 2 cut(s) 903, 1215
BseNI ACTGG 1 cut(s) 350
BseRI GAGGAG 1 cut(s) 14
BseX3I CGGCCG 1 cut(s) 962
BseXI GCAGC 3 cut(s) 1276, 1297, 1321
BseYI CCCAGC 1 cut(s) 1228
BsgI GTGCAG 2 cut(s) 377, 782
Bsh1236I CGCG 1 cut(s) 333
Bsh1285I CGRYCG 1 cut(s) 965
BshFI GGCC 3 cut(s) 292, 964, 1385
BsiEI CGRYCG 1 cut(s) 965
BsiHKAI GWGCWC 2 cut(s) 1006, 1086
BsiSI CCGG 3 cut(s) 276, 524, 1382
BslFI GGGAC 4 cut(s) 500, 545, 796, 1231
BslI CCNNNNNNNGG 2 cut(s) 299, 1392
BsmFI GGGAC 4 cut(s) 500, 545, 796, 1231
BsnI GGCC 3 cut(s) 292, 964, 1385
Bsp119I TTCGAA 1 cut(s) 513
Bsp1286I GDGCHC 5 cut(s) 166, 310, 1006, 1086, 1192
Bsp1407I TGTACA 1 cut(s) 869
Bsp143I GATC 6 cut(s) 156, 710, 796, 885, 1102, 1327
BspACI CCGC 4 cut(s) 73, 257, 333, 961
BspANI GGCC 3 cut(s) 292, 964, 1385
BspCNI CTCAG 2 cut(s) 902, 1216
BspFNI CGCG 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 1219
BspPI GGATC 2 cut(s) 718, 1335
BspT104I TTCGAA 1 cut(s) 513
BspTI CTTAAG 1 cut(s) 1148
BsrBI CCGCTC 1 cut(s) 259
BsrDI GCAATG 3 cut(s) 460, 888, 1359
BsrFI RCCGGY 1 cut(s) 275
BsrGI TGTACA 1 cut(s) 869
BsrI ACTGG 1 cut(s) 350
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 3 cut(s) 169, 1053, 1108
BssMI GATC 6 cut(s) 156, 710, 796, 885, 1102, 1327
BssNI GRCGYC 1 cut(s) 362
BssSI CACGAG 1 cut(s) 1005
BssT1I CCWWGG 2 cut(s) 1053, 1108
Bst2BI CACGAG 1 cut(s) 1005
Bst4CI ACNGT 2 cut(s) 89, 438
BstACI GRCGYC 1 cut(s) 362
BstAFI CTTAAG 1 cut(s) 1148
BstAUI TGTACA 1 cut(s) 869
BstBAI YACGTR 1 cut(s) 410
BstBI TTCGAA 1 cut(s) 513
BstC8I GCNNGC 3 cut(s) 277, 290, 451
BstDEI CTNAG 2 cut(s) 889, 1224
BstEII GGTNACC 1 cut(s) 344
BstENI CCTNNNNNAGG 1 cut(s) 1390
BstF5I GGATG 5 cut(s) 409, 525, 618, 634, 706
BstFNI CGCG 1 cut(s) 333
BstH2I RGCGCY 1 cut(s) 896
BstHHI GCGC 1 cut(s) 895
BstKTI GATC 6 cut(s) 159, 713, 799, 888, 1105, 1330
BstMBI GATC 6 cut(s) 156, 710, 796, 885, 1102, 1327
BstMCI CGRYCG 1 cut(s) 965
BstMWI GCNNNNNNNGC 7 cut(s) 191, 285, 314, 323, 455, 1165, 1270
BstNSI RCATGY 4 cut(s) 379, 746, 1159, 1364
BstPI GGTNACC 1 cut(s) 344
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 3 cut(s) 1276, 1297, 1321
BstX2I RGATCY 1 cut(s) 710
BstXI CCANNNNNNTGG 1 cut(s) 1228
BstYI RGATCY 1 cut(s) 710
BstZI CGGCCG 1 cut(s) 962
BsuRI GGCC 3 cut(s) 292, 964, 1385
BtgZI GCGATG 1 cut(s) 473
BtrI CACGTC 1 cut(s) 535
BtsCI GGATG 5 cut(s) 409, 525, 618, 634, 706
BtsI GCAGTG 1 cut(s) 286
BtsIMutI CAGTG 2 cut(s) 286, 1221
Cac8I GCNNGC 3 cut(s) 277, 290, 451
CfoI GCGC 1 cut(s) 895
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 1218
Csp6I GTAC 2 cut(s) 870, 1358
CviQI GTAC 2 cut(s) 870, 1358
DdeI CTNAG 2 cut(s) 889, 1224
DpnI GATC 6 cut(s) 158, 712, 798, 887, 1104, 1329
DpnII GATC 6 cut(s) 156, 710, 796, 885, 1102, 1327
DraI TTTAAA 1 cut(s) 1042
EaeI YGGCCR 2 cut(s) 290, 962
EagI CGGCCG 1 cut(s) 962
EclXI CGGCCG 1 cut(s) 962
Eco130I CCWWGG 2 cut(s) 1053, 1108
Eco24I GRGCYC 3 cut(s) 166, 310, 1192
Eco47I GGWCC 1 cut(s) 1218
Eco47III AGCGCT 1 cut(s) 894
Eco52I CGGCCG 1 cut(s) 962
Eco91I GGTNACC 1 cut(s) 344
EcoNI CCTNNNNNAGG 1 cut(s) 1390
EcoO65I GGTNACC 1 cut(s) 344
EcoRI GAATTC 2 cut(s) 1012, 1368
EcoT14I CCWWGG 2 cut(s) 1053, 1108
EcoT38I GRGCYC 3 cut(s) 166, 310, 1192
ErhI CCWWGG 2 cut(s) 1053, 1108
FaqI GGGAC 4 cut(s) 500, 545, 796, 1231
FauI CCCGC 1 cut(s) 80
FbaI TGATCA 1 cut(s) 156
Fnu4HI GCNGC 5 cut(s) 334, 962, 1265, 1311, 1335
FokI GGATG 5 cut(s) 416, 532, 625, 641, 713
FriOI GRGCYC 3 cut(s) 166, 310, 1192
Fsp4HI GCNGC 5 cut(s) 334, 962, 1265, 1311, 1335
FspBI CTAG 1 cut(s) 1109
GlaI GCGC 1 cut(s) 894
GluI GCNGC 5 cut(s) 334, 962, 1265, 1311, 1335
GsaI CCCAGC 1 cut(s) 1232
GsuI CTGGAG 1 cut(s) 26
HaeII RGCGCY 1 cut(s) 896
HaeIII GGCC 3 cut(s) 292, 964, 1385
HapII CCGG 3 cut(s) 276, 524, 1382
HhaI GCGC 1 cut(s) 895
Hin1I GRCGYC 1 cut(s) 362
Hin6I GCGC 1 cut(s) 893
HinP1I GCGC 1 cut(s) 893
HinfI GANTC 2 cut(s) 8, 1210
HpaII CCGG 3 cut(s) 276, 524, 1382
HphI GGTGA 5 cut(s) 73, 356, 404, 599, 1030
Hpy166II GTNNAC 2 cut(s) 546, 1280
Hpy188I TCNGA 3 cut(s) 156, 161, 1374
Hpy188III TCNNGA 2 cut(s) 37, 607
Hpy8I GTNNAC 2 cut(s) 546, 1280
Hpy99I CGWCG 2 cut(s) 275, 367
HpyAV CCTTC 1 cut(s) 910
HpyCH4III ACNGT 2 cut(s) 89, 438
HpyCH4IV ACGT 3 cut(s) 362, 409, 534
HpyCH4V TGCA 7 cut(s) 358, 407, 453, 763, 788, 986, 1264
HpyF10VI GCNNNNNNNGC 7 cut(s) 191, 285, 314, 323, 455, 1165, 1270
HpyF3I CTNAG 2 cut(s) 889, 1224
HpySE526I ACGT 3 cut(s) 362, 409, 534
Hsp92I GRCGYC 1 cut(s) 362
HspAI GCGC 1 cut(s) 893
KroI GCCGGC 1 cut(s) 275
KroNI GCCGGC 1 cut(s) 277
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 6 cut(s) 156, 710, 796, 885, 1102, 1327
LmnI GCTCC 2 cut(s) 27, 1081
Lsp1109I GCAGC 3 cut(s) 1276, 1297, 1321
LweI GCATC 4 cut(s) 204, 394, 510, 1162
MaeI CTAG 1 cut(s) 1109
MaeII ACGT 3 cut(s) 362, 409, 534
MaeIII GTNAC 4 cut(s) 101, 296, 344, 973
MalI GATC 6 cut(s) 158, 712, 798, 887, 1104, 1329
MbiI CCGCTC 1 cut(s) 259
MboI GATC 6 cut(s) 156, 710, 796, 885, 1102, 1327
MboII GAAGA 2 cut(s) 490, 675
MflI RGATCY 1 cut(s) 710
MhlI GDGCHC 5 cut(s) 166, 310, 1006, 1086, 1192
MluCI AATT 7 cut(s) 116, 694, 732, 1012, 1250, 1368, 1377
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 52
MroNI GCCGGC 1 cut(s) 275
MroXI GAANNNNTTC 1 cut(s) 839
MseI TTAA 4 cut(s) 858, 1041, 1128, 1149
MslI CAYNNNNRTG 1 cut(s) 741
MspCI CTTAAG 1 cut(s) 1148
MspI CCGG 3 cut(s) 276, 524, 1382
MvnI CGCG 1 cut(s) 333
MwoI GCNNNNNNNGC 7 cut(s) 191, 285, 314, 323, 455, 1165, 1270
NaeI GCCGGC 1 cut(s) 277
NdeII GATC 6 cut(s) 156, 710, 796, 885, 1102, 1327
NgoMIV GCCGGC 1 cut(s) 275
NlaIV GGNNCC 1 cut(s) 1219
NmuCI GTSAC 1 cut(s) 344
NspI RCATGY 4 cut(s) 379, 746, 1159, 1364
NspV TTCGAA 1 cut(s) 513
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 267
PdiI GCCGGC 1 cut(s) 277
PdmI GAANNNNTTC 1 cut(s) 839
PfeI GAWTC 1 cut(s) 1210
PkrI GCNGC 5 cut(s) 335, 963, 1266, 1312, 1336
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Ppu21I YACGTR 1 cut(s) 410
PspEI GGTNACC 1 cut(s) 344
PspFI CCCAGC 1 cut(s) 1228
PspN4I GGNNCC 1 cut(s) 1219
PspPI GGNCC 1 cut(s) 1218
PsuI RGATCY 1 cut(s) 710
RsaI GTAC 2 cut(s) 871, 1359
RsaNI GTAC 2 cut(s) 870, 1358
RseI CAYNNNNRTG 1 cut(s) 741
SaqAI TTAA 4 cut(s) 858, 1041, 1128, 1149
SatI GCNGC 5 cut(s) 334, 962, 1265, 1311, 1335
Sau3AI GATC 6 cut(s) 156, 710, 796, 885, 1102, 1327
Sau96I GGNCC 1 cut(s) 1218
SchI GAGTC 1 cut(s) 17
SduI GDGCHC 5 cut(s) 166, 310, 1006, 1086, 1192
SfaNI GCATC 4 cut(s) 204, 394, 510, 1162
SfuI TTCGAA 1 cut(s) 513
SinI GGWCC 1 cut(s) 1218
SmiMI CAYNNNNRTG 1 cut(s) 741
SmlI CTYRAG 1 cut(s) 1148
SmoI CTYRAG 1 cut(s) 1148
Sse9I AATT 7 cut(s) 116, 694, 732, 1012, 1250, 1368, 1377
SsiI CCGC 4 cut(s) 73, 257, 333, 961
SspMI CTAG 1 cut(s) 1109
StyI CCWWGG 2 cut(s) 1053, 1108
TaaI ACNGT 2 cut(s) 89, 438
TaiI ACGT 3 cut(s) 365, 412, 537
TaqI TCGA 4 cut(s) 420, 506, 513, 843
TasI AATT 7 cut(s) 116, 694, 732, 1012, 1250, 1368, 1377
TatI WGTACW 1 cut(s) 869
TauI GCSGC 2 cut(s) 336, 964
TfiI GAWTC 1 cut(s) 1210
Tru1I TTAA 4 cut(s) 858, 1041, 1128, 1149
Tru9I TTAA 4 cut(s) 858, 1041, 1128, 1149
TscAI CASTG 2 cut(s) 286, 1228
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 3 cut(s) 1264, 1310, 1334
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 6 cut(s) 438, 672, 675, 725, 1202, 1251
TspRI CASTG 2 cut(s) 286, 1228
Vha464I CTTAAG 1 cut(s) 1148
VpaK11BI GGWCC 1 cut(s) 1218
XagI CCTNNNNNAGG 1 cut(s) 1390
XapI RAATTY 5 cut(s) 116, 732, 1012, 1368, 1377
XceI RCATGY 4 cut(s) 379, 746, 1159, 1364
XmaJI CCTAGG 1 cut(s) 1108
XmnI GAANNNNTTC 1 cut(s) 839
XspI CTAG 1 cut(s) 1109
ZraI GACGTC 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.