Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009495

Physical Location & Seq

Genomic Coordinates Forward (+)

2536637 .. 2537347

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g03410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCCAACCCTCCTCTACAACACTTTGATCAGAGCCCATCTAGGTTTCGGCCAACCCCGCAAGACCCTCCTCCTCTTCATCCACATGCTTGCCCACCAAGCCCCTCCCAACAGCCACACATTCCCTCCGCTTATCAAAGCCGCCGCAGCCACCTCTTCCTCCTCCTCATCGCCCTGTCCGGGCTCTCCCCTTCATACCCAAGTCGTAAAACGCGGCGTTTTGCGCGACCCTTTTATACAGACCTCGTTTGTGAGCTTCTATGCTGAGCTTGGTAAATTGTGCGATGCGCGTAAGGTGTTTGAGGAAATGTCTGAACCATGTGTGGTTGCGTGCAATGCGATGATTGATGGGTTTGGGAAGAATGGGGATATGGGTTCTGCTGTTTTGCTATTTGAAAGCATGCTGGAAAGGGACGTGGTTTCATGGACAAGCGTTATAAACGGGTTTGGGAGAAATGGGTGTTTTAGCGAGGGAATTTGGTTTTTTCAGATGATGATGAATCATGAGAATGTGATGGGTTGTTTTGTGAAGCCAAATGAAGCTACTTATGTTAGTGTGCTTTCTTCCTGTGCTAATTTGGGTGGGTGGGGATCTATTTATTGGGGGAAGCAAATACATGGGCATGTTATTAGGAATGTGATTGAATTGACTGCGTTTTTGGGGACTGCATTGGATGCAAGATCGATCTTTACGGGAAGACTGGCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

237

Amino Acids

25.81

Weight (kDa)

8.19

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	106 - 138	4.4e-07	PPR repeat family
PPR	PF01535	109 - 138	5.7e-07	PPR repeat
PPR	PF01535	140 - 167	4.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10330
fragaria_vesca	FvH4_6g42841
malus_domestica	MD09G1072300.v1.1
prunus_persica	Prupe.3G214500_v2.0.a1
pyrus_communis	pycom09g03390 pycom09g03410 pycom09g03420 pycom17g09460
rosa_chinensis	RchiOBHm_Chr2g0158781
rosa_laevigata	RLG00000021112 RLG00000025824
rosa_multiflora	Rmu_sc0003664.1_g000002 Rmu_sc0003664.1_g000004 Rmu_sc0038467.1_g000001 Rmu_sc0038467.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091010
rosa_rugosa	Rorug02G0472600
rosa_samantha	Rh2BG550900 Rh2CG521400 Rh2DG560700
rosa_wichuraiana	Rw2G044540 Rw3G001550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	437
AccII	CGCG	3 cut(s)	213, 225, 289
AciI	CCGC	5 cut(s)	58, 128, 141, 144, 213
AclWI	GGATC	1 cut(s)	598
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	474
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	395, 644
AjiI	CACGTC	1 cut(s)	415
AluBI	AGCT	3 cut(s)	255, 268, 542
AluI	AGCT	3 cut(s)	255, 268, 542
AlwI	GGATC	1 cut(s)	598
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	474
ArsI	GACNNNNNNTTYG	3 cut(s)	640, 672, 690
AspLEI	GCGC	2 cut(s)	225, 289
AsuC2I	CCSGG	1 cut(s)	180
BanII	GRGCYC	2 cut(s)	37, 185
BbsI	GAAGAC	1 cut(s)	703
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	3 cut(s)	45, 341, 508
BclI	TGATCA	1 cut(s)	27
BcnI	CCSGG	1 cut(s)	180
BfaI	CTAG	1 cut(s)	41
BisI	GCNGC	4 cut(s)	141, 144, 147, 214
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	4 cut(s)	142, 145, 148, 215
Bme1390I	CCNGG	1 cut(s)	180
BmgBI	CACGTC	1 cut(s)	415
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	2 cut(s)	274, 664
BpiI	GAAGAC	1 cut(s)	703
Bpu1102I	GCTNAGC	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	180
Bsa29I	ATCGAT	1 cut(s)	683
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	705
Bse3DI	GCAATG	1 cut(s)	340
BseCI	ATCGAT	1 cut(s)	683
BseGI	GGATG	2 cut(s)	78, 679
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	705
BseRI	GAGGAG	4 cut(s)	59, 62, 151, 154
BseXI	GCAGC	1 cut(s)	158
Bsh1236I	CGCG	3 cut(s)	213, 225, 289
BshFI	GGCC	1 cut(s)	51
BshVI	ATCGAT	1 cut(s)	683
BsiSI	CCGG	1 cut(s)	179
BslFI	GGGAC	2 cut(s)	425, 676
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmFI	GGGAC	2 cut(s)	425, 676
BsnI	GGCC	1 cut(s)	51
Bsp1286I	GDGCHC	2 cut(s)	37, 185
Bsp143I	GATC	4 cut(s)	27, 590, 680, 684
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	5 cut(s)	58, 128, 141, 144, 213
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	683
BspFNI	CGCG	3 cut(s)	213, 225, 289
BspHI	TCATGA	1 cut(s)	502
BspPI	GGATC	1 cut(s)	598
BsrDI	GCAATG	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	705
BssMI	GATC	4 cut(s)	27, 590, 680, 684
Bst6I	CTCTTC	2 cut(s)	80, 160
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstC8I	GCNNGC	3 cut(s)	90, 331, 401
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	2 cut(s)	78, 679
BstFNI	CGCG	3 cut(s)	213, 225, 289
BstHHI	GCGC	2 cut(s)	225, 289
BstKTI	GATC	4 cut(s)	30, 593, 683, 687
BstMBI	GATC	4 cut(s)	27, 590, 680, 684
BstMWI	GCNNNNNNNGC	6 cut(s)	57, 98, 146, 222, 335, 674
BstNSI	RCATGY	3 cut(s)	88, 403, 626
BstSCI	CCNGG	1 cut(s)	178
BstUI	CGCG	3 cut(s)	213, 225, 289
BstV1I	GCAGC	1 cut(s)	158
BstV2I	GAAGAC	1 cut(s)	703
BstX2I	RGATCY	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	590
Bsu15I	ATCGAT	1 cut(s)	683
BsuRI	GGCC	1 cut(s)	51
BsuTUI	ATCGAT	1 cut(s)	683
BtgZI	GCGATG	3 cut(s)	153, 297, 353
BtrI	CACGTC	1 cut(s)	415
BtsCI	GGATG	2 cut(s)	78, 679
Cac8I	GCNNGC	3 cut(s)	90, 331, 401
CciI	TCATGA	1 cut(s)	502
CfoI	GCGC	2 cut(s)	225, 289
ClaI	ATCGAT	1 cut(s)	683
CviAII	CATG	7 cut(s)	85, 318, 400, 423, 503, 617, 623
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	4 cut(s)	29, 592, 682, 686
DpnII	GATC	4 cut(s)	27, 590, 680, 684
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	2 cut(s)	80, 160
EarI	CTCTTC	2 cut(s)	80, 160
Eco24I	GRGCYC	2 cut(s)	37, 185
EcoT38I	GRGCYC	2 cut(s)	37, 185
FaeI	CATG	7 cut(s)	88, 321, 403, 426, 506, 620, 626
FaqI	GGGAC	2 cut(s)	425, 676
FatI	CATG	7 cut(s)	84, 317, 399, 422, 502, 616, 622
FauI	CCCGC	1 cut(s)	65
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	4 cut(s)	141, 144, 147, 214
FokI	GGATG	2 cut(s)	65, 686
FriOI	GRGCYC	2 cut(s)	37, 185
Fsp4HI	GCNGC	4 cut(s)	141, 144, 147, 214
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	2 cut(s)	224, 288
GluI	GCNGC	4 cut(s)	141, 144, 147, 214
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	179
HhaI	GCGC	2 cut(s)	225, 289
Hin1II	CATG	7 cut(s)	88, 321, 403, 426, 506, 620, 626
Hin6I	GCGC	2 cut(s)	223, 287
HinP1I	GCGC	2 cut(s)	223, 287
HinfI	GANTC	1 cut(s)	499
HpaII	CCGG	1 cut(s)	179
Hpy188I	TCNGA	3 cut(s)	32, 313, 489
Hpy188III	TCNNGA	1 cut(s)	503
HpyAV	CCTTC	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	3 cut(s)	333, 668, 677
HpyF10VI	GCNNNNNNNGC	6 cut(s)	57, 98, 146, 222, 335, 674
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	7 cut(s)	88, 321, 403, 426, 506, 620, 626
HspAI	GCGC	2 cut(s)	223, 287
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	27, 590, 680, 684
LpnPI	CCDG	5 cut(s)	187, 192, 389, 580, 686
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	2 cut(s)	274, 664
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	1 cut(s)	414
MalI	GATC	4 cut(s)	29, 592, 682, 686
MboI	GATC	4 cut(s)	27, 590, 680, 684
MboII	GAAGA	5 cut(s)	67, 147, 370, 555, 708
MflI	RGATCY	1 cut(s)	590
MhlI	GDGCHC	2 cut(s)	37, 185
MluCI	AATT	4 cut(s)	275, 474, 574, 644
MslI	CAYNNNNRTG	3 cut(s)	83, 507, 621
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	180
MvnI	CGCG	3 cut(s)	213, 225, 289
MwoI	GCNNNNNNNGC	6 cut(s)	57, 98, 146, 222, 335, 674
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	4 cut(s)	27, 590, 680, 684
NlaIII	CATG	7 cut(s)	88, 321, 403, 426, 506, 620, 626
NspI	RCATGY	3 cut(s)	88, 403, 626
PaeI	GCATGC	1 cut(s)	403
PagI	TCATGA	1 cut(s)	502
PfeI	GAWTC	1 cut(s)	499
PkrI	GCNGC	4 cut(s)	142, 145, 148, 215
PsiI	TTATAA	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	590
RseI	CAYNNNNRTG	3 cut(s)	83, 507, 621
SatI	GCNGC	4 cut(s)	141, 144, 147, 214
Sau3AI	GATC	4 cut(s)	27, 590, 680, 684
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	2 cut(s)	37, 185
SetI	ASST	8 cut(s)	46, 155, 245, 257, 270, 297, 417, 544
SfaNI	GCATC	2 cut(s)	274, 664
SmiMI	CAYNNNNRTG	3 cut(s)	83, 507, 621
SphI	GCATGC	1 cut(s)	403
Sse9I	AATT	4 cut(s)	275, 474, 574, 644
SsiI	CCGC	5 cut(s)	58, 128, 141, 144, 213
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	178
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	1 cut(s)	683
TasI	AATT	4 cut(s)	275, 474, 574, 644
TauI	GCSGC	3 cut(s)	143, 146, 216
TfiI	GAWTC	1 cut(s)	499
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	5 cut(s)	67, 182, 411, 512, 552
XapI	RAATTY	1 cut(s)	474
XceI	RCATGY	3 cut(s)	88, 403, 626
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.