Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009495

Physical Location & Seq

Genomic Coordinates Reverse (-)

4978648 .. 4980084

Gene Structure 1437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1072300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGCCACACTCATCACCCGAGTCTCTACTTCAACTCCTCCAATGCTTCCTCAAGCACCCTAACCAAATCAAACAGATCCATTCCCGCCTATTCACCAACGGTCATCTCCTCCACAACCAACACCCTAAACCCTCCGCTTCCAAATGGATGCCAACCCTCCTCTACAACACTTTGATCAGAGCCCATCTCGGTTTCGGCCAACCCCGCAAGACCCTCCTTCTCTTCATCCACATGCTTGCCCACCAAGCCCCTCCCAACAGCCACACATTCCCTCCGCTTATCAAAGCCGCCGCAGCCACCTCTTCCTCCTCCTCATCGCCCCGTCTGGGCTCTCCGCTTCATACCCAAGTCGTAAAACGCGGCGTTTTGCGCGACCCTTTTATACAGACCTCGTTTGTGAGCTTCTATGCCGAGCTTGGTAAATTGTGCGATGCGCGTAAGGTGTTTGAGGAAATGTCTGAACCATGTGTGGTTGCGTGCAATGCGATGATTGATGGGTTTGGGAGGAATGGGGATATGGGTTCTGCTGTTTTGCTATTTGAAAGCATGCCGGAAAGGGACGTGGTTTCATGGACAAGCGTTATAAACGGGTTTGGGAGAAATGGGTGTTTTAGCGAGGGAATTCGATTTTTTCAGATAATGATGAATCATGAGAATGTGATGGGTTGTTTTGTGAAGCCAAATGAAGCTACTTATGTTAGTGTGCTTTCTTCCTGTGCTAATTTGGGTGGGTGGGGATCTATTTATTGGGGGAAGCAAATACATGGGCATGTTATTAGAAATGGGATTGAATTGACTGCGTTTTTAGGGACTGCATTGGTGGATCTTTACGGGAAGACTGGCTGTTTGAACAGCGCTGGGTACATGTACCAGCAAGTGGTAGTTAAAGAAGTTTGTACTTGGAATGCGATGATTTCTGCACTTTCTTTGAATGGTAAAGAGAAGGAGGCTTTGGACTTGTTTGAAAACATGAAGATGGAGAGGTTGCAGCCTAATGAGGTTACATTTGTCGCAGTTCTTACAGCATGTGCTCGTGGAAAACTGGTGAAGTTTGGTTTGGAATTGTTTAGATCGATGACAAATGATTTCGGGGTTGAGCCGATAATGGAACACTACGGGTGTGTGGTTGACCTCTTGGGCAGAGCGGGGCTGTTTTGGGAGGCAACTGAAGTTATTAAAAGCATGCCTTTCGAGCCTGATGCCTCTGTATTGGGGGCTCTTTTAGGTTCTTGTAAGATTCATGGGACTGCTGAGCTGGGAAATGAAGTTGGTGAGAAACTTCTCGAGTTGCAGCCACAACACTGTGGACGATACGTGGTTTTGTCAAACATTAATGCTGGGAAGGAGAGATGGGATCTTGCTGCAGCTGTGAGGAAAACAATGGTGGATGCCGGAATTCTGAAAATTCCGGCCTACAGTATGATTGAAGTAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

479

Amino Acids

52.75

Weight (kDa)

8.17

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	155 - 187	2.4e-06	PPR repeat family
PPR	PF01535	158 - 187	4e-06	PPR repeat
PPR_2	PF13041	186 - 241	2.4e-06	PPR repeat family
PPR_3	PF13812	297 - 343	2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	298 - 345	1e-11	PPR repeat family
PPR	PF01535	300 - 327	5.3e-07	PPR repeat
E_motif	PF20431	416 - 476	3.8e-09	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10330
fragaria_vesca	FvH4_6g42841
malus_domestica	MD09G1072300.v1.1
prunus_persica	Prupe.3G214500_v2.0.a1
pyrus_communis	pycom09g03390 pycom09g03410 pycom09g03420 pycom17g09460
rosa_chinensis	RchiOBHm_Chr2g0158781
rosa_laevigata	RLG00000021112 RLG00000025824
rosa_multiflora	Rmu_sc0003664.1_g000002 Rmu_sc0003664.1_g000004 Rmu_sc0038467.1_g000001 Rmu_sc0038467.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091010
rosa_rugosa	Rorug02G0472600
rosa_samantha	Rh2BG550900 Rh2CG521400 Rh2DG560700
rosa_wichuraiana	Rw2G044540 Rw3G001550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
AccB7I	CCANNNNNTGG	1 cut(s)	877
AccBSI	CCGCTC	1 cut(s)	1145
AccII	CGCG	3 cut(s)	360, 372, 436
AciI	CCGC	9 cut(s)	85, 135, 205, 275, 288, 291, 335, 360, 1145
AclWI	GGATC	4 cut(s)	70, 745, 831, 1362
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	3 cut(s)	621, 1395, 1404
AcuI	CTGAAG	1 cut(s)	1188
AfaI	GTAC	3 cut(s)	863, 869, 898
AfeI	AGCGCT	1 cut(s)	856
AfiI	CCNNNNNNNGG	2 cut(s)	326, 877
AflIII	ACRYGT	1 cut(s)	864
AgsI	TTSAA	7 cut(s)	32, 542, 791, 850, 931, 965, 1427
AjiI	CACGTC	1 cut(s)	562
AjuI	GAANNNNNNNTTGG	4 cut(s)	935, 967, 1040, 1072
AluBI	AGCT	5 cut(s)	402, 415, 689, 1255, 1367
AluI	AGCT	5 cut(s)	402, 415, 689, 1255, 1367
Alw21I	GWGCWC	1 cut(s)	1033
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	4 cut(s)	70, 745, 831, 1362
Ama87I	CYCGRG	2 cut(s)	17, 1283
Aor51HI	AGCGCT	1 cut(s)	856
AoxI	GGCC	2 cut(s)	196, 1410
ApeKI	GCWGC	5 cut(s)	293, 988, 1291, 1361, 1364
ApoI	RAATTY	3 cut(s)	621, 1395, 1404
ArsI	GACNNNNNNTTYG	2 cut(s)	829, 861
AseI	ATTAAT	1 cut(s)	1332
AspLEI	GCGC	3 cut(s)	372, 436, 857
AsuHPI	GGTGA	4 cut(s)	6, 85, 1057, 1283
AvaI	CYCGRG	2 cut(s)	17, 1283
BanII	GRGCYC	3 cut(s)	184, 332, 1219
BauI	CACGAG	1 cut(s)	1032
BbsI	GAAGAC	1 cut(s)	842
Bbv12I	GWGCWC	1 cut(s)	1033
BbvI	GCAGC	5 cut(s)	305, 1000, 1303, 1348, 1376
BccI	CCATC	5 cut(s)	192, 488, 655, 970, 1344
BcgI	CGANNNNNNTGC	4 cut(s)	1171, 1181, 1205, 1215
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	27
BfmI	CTRYAG	2 cut(s)	1362, 1414
BfoI	RGCGCY	1 cut(s)	858
BisI	GCNGC	8 cut(s)	288, 291, 294, 361, 989, 1292, 1362, 1365
BlpI	GCTNAGC	1 cut(s)	1251
BlsI	GCNGC	8 cut(s)	289, 292, 295, 362, 990, 1293, 1363, 1366
BmeT110I	CYCGRG	2 cut(s)	17, 1283
BmgBI	CACGTC	1 cut(s)	562
BmsI	GCATC	4 cut(s)	138, 421, 1189, 1378
BpiI	GAAGAC	1 cut(s)	842
BplI	GAGNNNNNCTC	2 cut(s)	171, 203
Bpu1102I	GCTNAGC	1 cut(s)	1251
BpuEI	CTTGAG	1 cut(s)	35
Bsa29I	ATCGAT	1 cut(s)	1073
BsaAI	YACGTR	1 cut(s)	1315
BsaXI	ACNNNNNCTCC	4 cut(s)	18, 48, 256, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 877
Bse1I	ACTGG	2 cut(s)	844, 1047
Bse3DI	GCAATG	1 cut(s)	487
BseCI	ATCGAT	1 cut(s)	1073
BseGI	GGATG	3 cut(s)	153, 225, 1393
BseLI	CCNNNNNNNGG	2 cut(s)	326, 877
BseMI	GCAATG	1 cut(s)	487
BseMII	CTCAG	1 cut(s)	1242
BseNI	ACTGG	2 cut(s)	844, 1047
BseRI	GAGGAG	5 cut(s)	26, 98, 149, 298, 301
BseXI	GCAGC	5 cut(s)	305, 1000, 1303, 1348, 1376
BseYI	CCCAGC	3 cut(s)	857, 1255, 1337
BsgI	GTGCAG	1 cut(s)	903
Bsh1236I	CGCG	3 cut(s)	360, 372, 436
BshFI	GGCC	2 cut(s)	198, 1412
BshVI	ATCGAT	1 cut(s)	1073
BsiHKAI	GWGCWC	1 cut(s)	1033
BsiHKCI	CYCGRG	2 cut(s)	17, 1283
BsiSI	CCGG	3 cut(s)	551, 1392, 1409
BslFI	GGGAC	3 cut(s)	572, 823, 1258
BslI	CCNNNNNNNGG	2 cut(s)	326, 877
BsmAI	GTCTC	1 cut(s)	27
BsmFI	GGGAC	3 cut(s)	572, 823, 1258
BsmI	GAATGC	1 cut(s)	910
BsnI	GGCC	2 cut(s)	198, 1412
BsoBI	CYCGRG	2 cut(s)	17, 1283
Bsp1286I	GDGCHC	4 cut(s)	184, 332, 1033, 1219
Bsp143I	GATC	6 cut(s)	75, 174, 737, 823, 1070, 1354
Bsp1720I	GCTNAGC	1 cut(s)	1251
BspACI	CCGC	9 cut(s)	85, 135, 205, 275, 288, 291, 335, 360, 1145
BspANI	GGCC	2 cut(s)	198, 1412
BspCNI	CTCAG	1 cut(s)	1243
BspDI	ATCGAT	1 cut(s)	1073
BspFNI	CGCG	3 cut(s)	360, 372, 436
BspHI	TCATGA	1 cut(s)	649
BspMAI	CTGCAG	1 cut(s)	1366
BspPI	GGATC	4 cut(s)	70, 745, 831, 1362
BsrBI	CCGCTC	1 cut(s)	1145
BsrDI	GCAATG	1 cut(s)	487
BsrI	ACTGG	2 cut(s)	844, 1047
BssMI	GATC	6 cut(s)	75, 174, 737, 823, 1070, 1354
BssSI	CACGAG	1 cut(s)	1032
Bst2BI	CACGAG	1 cut(s)	1032
Bst4CI	ACNGT	3 cut(s)	101, 1304, 1418
Bst6I	CTCTTC	2 cut(s)	227, 307
BstBAI	YACGTR	1 cut(s)	1315
BstC8I	GCNNGC	4 cut(s)	237, 478, 548, 1184
BstDEI	CTNAG	1 cut(s)	1251
BstF5I	GGATG	3 cut(s)	153, 225, 1393
BstFNI	CGCG	3 cut(s)	360, 372, 436
BstH2I	RGCGCY	1 cut(s)	858
BstHHI	GCGC	3 cut(s)	372, 436, 857
BstKTI	GATC	6 cut(s)	78, 177, 740, 826, 1073, 1357
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	6 cut(s)	75, 174, 737, 823, 1070, 1354
BstMWI	GCNNNNNNNGC	6 cut(s)	204, 245, 293, 369, 482, 1192
BstNSI	RCATGY	6 cut(s)	235, 550, 773, 868, 1029, 1186
BstSFI	CTRYAG	2 cut(s)	1362, 1414
BstUI	CGCG	3 cut(s)	360, 372, 436
BstV1I	GCAGC	5 cut(s)	305, 1000, 1303, 1348, 1376
BstV2I	GAAGAC	1 cut(s)	842
BstX2I	RGATCY	4 cut(s)	75, 737, 823, 1354
BstYI	RGATCY	4 cut(s)	75, 737, 823, 1354
Bsu15I	ATCGAT	1 cut(s)	1073
BsuRI	GGCC	2 cut(s)	198, 1412
BsuTUI	ATCGAT	1 cut(s)	1073
BtgZI	GCGATG	4 cut(s)	300, 444, 500, 923
BtrI	CACGTC	1 cut(s)	562
BtsCI	GGATG	3 cut(s)	153, 225, 1393
BtsIMutI	CAGTG	1 cut(s)	1300
Cac8I	GCNNGC	4 cut(s)	237, 478, 548, 1184
CciI	TCATGA	1 cut(s)	649
CfoI	GCGC	3 cut(s)	372, 436, 857
ClaI	ATCGAT	1 cut(s)	1073
Csp6I	GTAC	3 cut(s)	862, 868, 897
CviQI	GTAC	3 cut(s)	862, 868, 897
DdeI	CTNAG	1 cut(s)	1251
DpnI	GATC	6 cut(s)	77, 176, 739, 825, 1072, 1356
DpnII	GATC	6 cut(s)	75, 174, 737, 823, 1070, 1354
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	2 cut(s)	227, 307
EarI	CTCTTC	2 cut(s)	227, 307
Eco24I	GRGCYC	3 cut(s)	184, 332, 1219
Eco47III	AGCGCT	1 cut(s)	856
Eco57I	CTGAAG	1 cut(s)	1188
Eco88I	CYCGRG	2 cut(s)	17, 1283
EcoRI	GAATTC	2 cut(s)	621, 1395
EcoT38I	GRGCYC	3 cut(s)	184, 332, 1219
FalI	AAGNNNNNCTT	2 cut(s)	1171, 1203
FaqI	GGGAC	3 cut(s)	572, 823, 1258
FauI	CCCGC	3 cut(s)	92, 212, 1138
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	8 cut(s)	288, 291, 294, 361, 989, 1292, 1362, 1365
FokI	GGATG	3 cut(s)	160, 212, 1400
FriOI	GRGCYC	3 cut(s)	184, 332, 1219
Fsp4HI	GCNGC	8 cut(s)	288, 291, 294, 361, 989, 1292, 1362, 1365
GlaI	GCGC	3 cut(s)	371, 435, 856
GluI	GCNGC	8 cut(s)	288, 291, 294, 361, 989, 1292, 1362, 1365
GsaI	CCCAGC	3 cut(s)	861, 1259, 1341
HaeII	RGCGCY	1 cut(s)	858
HaeIII	GGCC	2 cut(s)	198, 1412
HapII	CCGG	3 cut(s)	551, 1392, 1409
HhaI	GCGC	3 cut(s)	372, 436, 857
Hin6I	GCGC	3 cut(s)	370, 434, 855
HinP1I	GCGC	3 cut(s)	370, 434, 855
HincII	GTYRAC	1 cut(s)	1129
HindII	GTYRAC	1 cut(s)	1129
HinfI	GANTC	3 cut(s)	20, 646, 1237
HpaII	CCGG	3 cut(s)	551, 1392, 1409
HphI	GGTGA	4 cut(s)	6, 85, 1057, 1283
Hpy166II	GTNNAC	2 cut(s)	1129, 1307
Hpy188I	TCNGA	4 cut(s)	179, 460, 636, 1401
Hpy188III	TCNNGA	2 cut(s)	650, 1283
Hpy8I	GTNNAC	2 cut(s)	1129, 1307
HpyAV	CCTTC	3 cut(s)	227, 937, 1336
HpyCH4III	ACNGT	3 cut(s)	101, 1304, 1418
HpyCH4IV	ACGT	2 cut(s)	561, 1314
HpyCH4V	TGCA	6 cut(s)	480, 815, 920, 988, 1291, 1364
HpyF10VI	GCNNNNNNNGC	6 cut(s)	204, 245, 293, 369, 482, 1192
HpyF3I	CTNAG	1 cut(s)	1251
HpySE526I	ACGT	2 cut(s)	561, 1314
HspAI	GCGC	3 cut(s)	370, 434, 855
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	6 cut(s)	75, 174, 737, 823, 1070, 1354
Lsp1109I	GCAGC	5 cut(s)	305, 1000, 1303, 1348, 1376
LweI	GCATC	4 cut(s)	138, 421, 1189, 1378
MaeII	ACGT	2 cut(s)	561, 1314
MaeIII	GTNAC	1 cut(s)	1000
MalI	GATC	6 cut(s)	77, 176, 739, 825, 1072, 1356
MbiI	CCGCTC	1 cut(s)	1145
MboI	GATC	6 cut(s)	75, 174, 737, 823, 1070, 1354
MboII	GAAGA	5 cut(s)	214, 294, 702, 847, 985
MflI	RGATCY	4 cut(s)	75, 737, 823, 1354
MhlI	GDGCHC	4 cut(s)	184, 332, 1033, 1219
MluCI	AATT	7 cut(s)	422, 621, 721, 791, 1061, 1395, 1404
MlyI	GAGTC	1 cut(s)	29
MseI	TTAA	3 cut(s)	885, 1176, 1332
MslI	CAYNNNNRTG	4 cut(s)	230, 654, 768, 974
MspA1I	CMGCKG	1 cut(s)	1367
MspI	CCGG	3 cut(s)	551, 1392, 1409
Mva1269I	GAATGC	1 cut(s)	910
MvnI	CGCG	3 cut(s)	360, 372, 436
MwoI	GCNNNNNNNGC	6 cut(s)	204, 245, 293, 369, 482, 1192
NdeII	GATC	6 cut(s)	75, 174, 737, 823, 1070, 1354
NmeAIII	GCCGAG	1 cut(s)	436
NspI	RCATGY	6 cut(s)	235, 550, 773, 868, 1029, 1186
PaeI	GCATGC	2 cut(s)	550, 1186
PaeR7I	CTCGAG	1 cut(s)	1283
PagI	TCATGA	1 cut(s)	649
PciI	ACATGT	1 cut(s)	864
PctI	GAATGC	1 cut(s)	910
PfeI	GAWTC	2 cut(s)	646, 1237
PflMI	CCANNNNNTGG	1 cut(s)	877
PkrI	GCNGC	8 cut(s)	289, 292, 295, 362, 990, 1293, 1363, 1366
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
Ppu21I	YACGTR	1 cut(s)	1315
PscI	ACATGT	1 cut(s)	864
PshBI	ATTAAT	1 cut(s)	1332
PsiI	TTATAA	1 cut(s)	584
PspFI	CCCAGC	3 cut(s)	857, 1255, 1337
PstI	CTGCAG	1 cut(s)	1366
PsuI	RGATCY	4 cut(s)	75, 737, 823, 1354
PvuII	CAGCTG	1 cut(s)	1367
RsaI	GTAC	3 cut(s)	863, 869, 898
RsaNI	GTAC	3 cut(s)	862, 868, 897
RseI	CAYNNNNRTG	4 cut(s)	230, 654, 768, 974
SaqAI	TTAA	3 cut(s)	885, 1176, 1332
SatI	GCNGC	8 cut(s)	288, 291, 294, 361, 989, 1292, 1362, 1365
Sau3AI	GATC	6 cut(s)	75, 174, 737, 823, 1070, 1354
SchI	GAGTC	1 cut(s)	29
SduI	GDGCHC	4 cut(s)	184, 332, 1033, 1219
SfaNI	GCATC	4 cut(s)	138, 421, 1189, 1378
SfcI	CTRYAG	2 cut(s)	1362, 1414
Sfr274I	CTCGAG	1 cut(s)	1283
SlaI	CTCGAG	1 cut(s)	1283
SmiMI	CAYNNNNRTG	4 cut(s)	230, 654, 768, 974
SmlI	CTYRAG	2 cut(s)	50, 1283
SmoI	CTYRAG	2 cut(s)	50, 1283
SphI	GCATGC	2 cut(s)	550, 1186
Sse9I	AATT	7 cut(s)	422, 621, 721, 791, 1061, 1395, 1404
SsiI	CCGC	9 cut(s)	85, 135, 205, 275, 288, 291, 335, 360, 1145
TaaI	ACNGT	3 cut(s)	101, 1304, 1418
TaiI	ACGT	2 cut(s)	564, 1317
TaqI	TCGA	4 cut(s)	625, 1073, 1191, 1284
TasI	AATT	7 cut(s)	422, 621, 721, 791, 1061, 1395, 1404
TatI	WGTACW	1 cut(s)	896
TauI	GCSGC	3 cut(s)	290, 293, 363
TfiI	GAWTC	2 cut(s)	646, 1237
Tru1I	TTAA	3 cut(s)	885, 1176, 1332
Tru9I	TTAA	3 cut(s)	885, 1176, 1332
TscAI	CASTG	1 cut(s)	1307
TseI	GCWGC	5 cut(s)	293, 988, 1291, 1361, 1364
TspDTI	ATGAA	8 cut(s)	214, 329, 558, 659, 699, 986, 1229, 1278
TspRI	CASTG	1 cut(s)	1307
Van91I	CCANNNNNTGG	1 cut(s)	877
VspI	ATTAAT	1 cut(s)	1332
XapI	RAATTY	3 cut(s)	621, 1395, 1404
XceI	RCATGY	6 cut(s)	235, 550, 773, 868, 1029, 1186
XhoI	CTCGAG	1 cut(s)	1283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.